Wall clock time and date at job start Tue Mar 31 2020 03:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.47110 * 2 1 4 4 C 1.46493 * 120.00539 * 90.00152 * 3 2 1 5 5 C 1.50708 * 109.46958 * 270.00126 * 4 3 2 6 6 H 1.08002 * 119.99983 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00048 * 179.97438 * 5 4 3 8 8 N 1.31525 * 120.00207 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00186 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47111 * 59.99852 * 9 7 5 11 11 H 1.48494 * 109.47361 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46968 * 300.00019 * 9 7 5 13 13 C 1.34777 * 119.99523 * 270.00051 * 3 2 1 14 14 O 1.21279 * 120.00231 * 180.02562 * 13 3 2 15 15 C 1.50706 * 120.00252 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47183 * 180.02562 * 15 13 3 17 17 C 1.46902 * 111.00039 * 180.02562 * 16 15 13 18 18 H 1.09000 * 110.43608 * 30.34398 * 17 16 15 19 19 C 1.54802 * 110.48950 * 152.89017 * 17 16 15 20 20 C 1.54993 * 102.09497 * 139.55534 * 19 17 16 21 21 O 1.44382 * 103.48861 * 322.97863 * 20 19 17 22 22 C 1.43735 * 106.97619 * 40.05756 * 21 20 19 23 23 H 1.08999 * 109.88032 * 92.91429 * 22 21 20 24 24 C 1.53000 * 109.87937 * 214.06239 * 22 21 20 25 25 C 1.52999 * 117.50051 * 8.16088 * 24 22 21 26 26 C 1.53000 * 117.50086 * 299.50035 * 24 22 21 27 27 H 1.08993 * 109.46672 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46571 * 300.00383 * 1 2 3 29 29 H 1.08994 * 109.46986 * 60.00390 * 1 2 3 30 30 H 1.08995 * 109.47282 * 239.99638 * 2 1 3 31 31 H 1.09004 * 109.47078 * 119.99636 * 2 1 3 32 32 H 1.08992 * 109.47545 * 150.00418 * 4 3 2 33 33 H 1.09003 * 109.47167 * 29.99729 * 4 3 2 34 34 H 0.97001 * 119.99953 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46948 * 300.00552 * 15 13 3 36 36 H 1.08999 * 109.46620 * 60.00272 * 15 13 3 37 37 H 1.00894 * 111.00406 * 56.04913 * 16 15 13 38 38 H 1.08997 * 110.91057 * 257.75396 * 19 17 16 39 39 H 1.09000 * 110.90928 * 21.32548 * 19 17 16 40 40 H 1.09004 * 110.61924 * 81.47611 * 20 19 17 41 41 H 1.08998 * 110.62452 * 204.32019 * 20 19 17 42 42 H 1.09004 * 115.55213 * 153.82679 * 24 22 21 43 43 H 1.09001 * 117.49453 * 359.97438 * 25 24 22 44 44 H 1.08997 * 117.50128 * 145.01722 * 25 24 22 45 45 H 1.08996 * 117.49925 * 214.97659 * 26 24 22 46 46 H 1.08996 * 117.49691 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0719 1.2686 5 6 1.0067 2.7824 1.7036 6 1 0.1159 2.7254 1.0957 7 6 0.9949 3.5050 2.8777 8 7 2.0796 3.5740 3.6184 9 14 -0.5615 4.3862 3.4166 10 1 -1.6546 3.3967 3.5935 11 1 -0.3144 5.0852 4.7033 12 1 -0.9531 5.3767 2.3818 13 6 2.2430 2.0165 -1.1673 14 8 2.6477 3.1598 -1.1674 15 6 1.9923 1.3058 -2.4724 16 7 2.3109 2.2056 -3.5890 17 6 2.0774 1.5453 -4.8803 18 1 1.2719 0.8160 -4.7947 19 6 1.7470 2.5918 -5.9721 20 6 2.5304 2.0459 -7.1930 21 8 3.7419 1.5211 -6.6085 22 6 3.3687 0.8706 -5.3823 23 1 3.1866 -0.1884 -5.5651 24 6 4.4807 1.0386 -4.3449 25 6 5.6360 1.9791 -4.6936 26 6 5.8574 0.4645 -4.6856 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.0644 2.7986 1.1382 33 1 2.5507 1.3453 2.0283 34 1 2.0714 4.0827 4.4443 35 1 2.6228 0.4186 -2.5298 36 1 0.9445 1.0114 -2.5302 37 1 3.2592 2.5437 -3.5217 38 1 0.6766 2.6164 -6.1762 39 1 2.1095 3.5794 -5.6867 40 1 1.9680 1.2534 -7.6868 41 1 2.7564 2.8489 -7.8945 42 1 4.1621 0.9976 -3.3033 43 1 5.6041 2.4778 -5.6623 44 1 6.0776 2.5565 -3.8815 45 1 6.4446 0.0461 -3.8682 46 1 5.9708 -0.0333 -5.6486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375980168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:18 Heat of formation + Delta-G solvation = -39.583881 kcal Electronic energy + Delta-G solvation = -25142.221617 eV Core-core repulsion = 21647.300303 eV Total energy + Delta-G solvation = -3494.921315 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -40.44638 -38.95935 -36.55245 -35.55087 -34.98024 -32.73126 -31.08861 -29.98186 -29.01758 -27.43487 -25.44796 -23.66005 -22.75528 -22.50712 -22.23912 -21.59493 -19.85950 -18.47483 -17.10032 -16.59228 -16.56358 -16.12997 -15.80552 -15.43357 -15.02198 -14.62559 -14.45613 -14.08103 -13.94412 -13.41314 -13.27979 -13.05550 -12.39305 -12.33930 -12.13819 -12.02515 -11.85626 -11.72168 -11.48486 -11.44034 -11.42052 -11.16938 -10.94320 -10.89226 -10.71009 -10.48584 -10.36806 -10.23921 -10.03862 -9.83650 -9.57386 -8.90488 -8.40446 -8.28559 -7.65038 -6.01746 -4.05630 3.33088 3.37796 3.38143 3.45229 3.59197 3.62185 3.78362 4.31013 4.40713 4.47065 4.54167 4.71704 4.87268 4.93695 4.99723 5.08603 5.12946 5.19732 5.24713 5.32814 5.35970 5.45169 5.51005 5.56211 5.58157 5.61074 5.77672 5.78717 5.84269 5.86543 5.98886 6.02760 6.10848 6.17606 6.30937 6.66966 6.76038 6.92070 7.13007 7.42435 7.46204 7.58068 7.94922 8.26497 8.43850 8.93342 9.12623 9.59080 11.06448 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.003645 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.626664 B = 7680.041737 C = 7857.166739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.504 3.496 14 O -0.527 6.527 15 C 0.035 3.965 16 N -0.661 5.661 17 C 0.063 3.937 18 H 0.090 0.910 19 C -0.143 4.143 20 C 0.045 3.955 21 O -0.369 6.369 22 C 0.079 3.921 23 H 0.071 0.929 24 C -0.182 4.182 25 C -0.159 4.159 26 C -0.171 4.171 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.263 0.737 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.361 0.639 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 -9.893 -18.695 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.013 4.013 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.097 4.097 16 N -0.297 5.297 17 C -0.048 4.048 18 H 0.108 0.892 19 C -0.181 4.181 20 C -0.032 4.032 21 O -0.288 6.288 22 C 0.020 3.980 23 H 0.089 0.911 24 C -0.200 4.200 25 C -0.196 4.196 26 C -0.208 4.208 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.185 0.815 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.135 0.865 43 H 0.124 0.876 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.305 -8.856 -18.543 20.591 hybrid contribution -0.524 -0.275 0.546 0.805 sum 0.782 -9.130 -17.997 20.196 Atomic orbital electron populations 1.22233 0.96330 1.00842 1.03444 1.21385 0.94605 0.83819 1.01523 1.48268 1.64076 1.13154 1.07712 1.19270 0.97523 0.92417 0.77991 1.21407 0.97505 1.31064 1.06079 0.92369 1.24930 0.96426 0.96280 0.96483 1.69924 1.27515 1.41731 1.14382 0.86590 0.83267 0.79941 0.77811 1.20310 1.21233 1.20186 1.20146 0.79136 0.86977 0.84834 1.90682 1.45541 1.17203 1.86906 1.22052 1.02443 0.94444 0.90735 1.60221 1.33854 1.36455 0.99147 1.22960 0.96021 0.95337 0.90517 0.89188 1.23144 1.01062 1.00416 0.93510 1.23553 0.85946 0.97801 0.95922 1.88857 1.29774 1.74447 1.35734 1.22873 0.93825 0.96583 0.84743 0.91109 1.22629 0.90001 1.08067 0.99309 1.22908 1.00257 0.92684 1.03778 1.22908 0.98026 0.97006 1.02849 0.92866 0.90504 0.93262 0.92255 0.90701 0.93976 0.95137 0.92736 0.92945 0.88526 0.81472 0.89997 0.89324 0.92366 0.88922 0.86532 0.87612 0.88684 0.88875 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.24 37.16 0.38 -2.17 16 2 C 0.11 1.73 5.98 -4.04 -0.02 1.71 16 3 N -0.60 -12.40 2.46 -175.06 -0.43 -12.83 16 4 C 0.25 6.41 5.20 -5.19 -0.03 6.38 16 5 C -0.52 -14.67 8.92 -34.44 -0.31 -14.97 16 6 H 0.06 1.63 7.42 -52.49 -0.39 1.24 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.98 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.50 10.32 7.71 -10.98 -0.08 10.24 16 14 O -0.53 -13.28 15.78 5.56 0.09 -13.19 16 15 C 0.04 0.52 3.77 -4.97 -0.02 0.50 16 16 N -0.66 -9.56 5.70 -106.38 -0.61 -10.17 16 17 C 0.06 0.70 3.39 -66.19 -0.22 0.47 16 18 H 0.09 0.88 7.79 -51.93 -0.40 0.47 16 19 C -0.14 -1.42 6.88 -24.73 -0.17 -1.59 16 20 C 0.04 0.39 7.72 38.21 0.29 0.69 16 21 O -0.37 -4.16 9.58 -35.23 -0.34 -4.50 16 22 C 0.08 0.85 3.79 -26.16 -0.10 0.75 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 C -0.18 -2.10 3.99 -90.62 -0.36 -2.46 16 25 C -0.16 -1.85 9.81 -26.69 -0.26 -2.11 16 26 C -0.17 -1.80 10.21 -26.69 -0.27 -2.07 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.39 7.26 -51.93 -0.38 1.02 16 29 H 0.05 0.72 7.22 -51.93 -0.38 0.35 16 30 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 31 H 0.07 1.14 7.89 -51.93 -0.41 0.73 16 32 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 33 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.05 0.66 5.99 -51.93 -0.31 0.34 16 36 H 0.10 1.31 7.12 -51.93 -0.37 0.94 16 37 H 0.36 5.61 5.78 -39.29 -0.23 5.38 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.02 8.06 -51.93 -0.42 0.61 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.12 1.49 4.70 -51.93 -0.24 1.25 16 43 H 0.11 1.25 7.07 -51.93 -0.37 0.89 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -32.73 362.23 -8.93 -41.65 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.54 Total: 5.56 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.27 Total: -2.99 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.30 Total: -48.95 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.25 Total: -17.69 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.73 -8.93 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375980168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.068 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds