Wall clock time and date at job start Tue Mar 31 2020 03:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.47110 * 2 1 4 4 C 1.46493 * 120.00539 * 90.00152 * 3 2 1 5 5 C 1.50708 * 109.46958 * 270.00126 * 4 3 2 6 6 H 1.08002 * 119.99983 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00048 * 179.97438 * 5 4 3 8 8 N 1.31525 * 120.00207 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00186 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47111 * 59.99852 * 9 7 5 11 11 H 1.48494 * 109.47361 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46968 * 300.00019 * 9 7 5 13 13 C 1.34777 * 119.99523 * 270.00051 * 3 2 1 14 14 O 1.21279 * 120.00231 * 180.02562 * 13 3 2 15 15 C 1.50706 * 120.00252 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47183 * 180.02562 * 15 13 3 17 17 C 1.46902 * 111.00039 * 180.02562 * 16 15 13 18 18 H 1.09000 * 110.43608 * 30.34398 * 17 16 15 19 19 C 1.54802 * 110.48950 * 152.89017 * 17 16 15 20 20 C 1.54993 * 102.09497 * 139.55534 * 19 17 16 21 21 O 1.44382 * 103.48861 * 322.97863 * 20 19 17 22 22 C 1.43735 * 106.97619 * 40.05756 * 21 20 19 23 23 H 1.08999 * 109.88032 * 92.91429 * 22 21 20 24 24 C 1.53000 * 109.87937 * 214.06239 * 22 21 20 25 25 C 1.52999 * 117.50051 * 8.16088 * 24 22 21 26 26 C 1.53000 * 117.50086 * 299.50035 * 24 22 21 27 27 H 1.08993 * 109.46672 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46571 * 300.00383 * 1 2 3 29 29 H 1.08994 * 109.46986 * 60.00390 * 1 2 3 30 30 H 1.08995 * 109.47282 * 239.99638 * 2 1 3 31 31 H 1.09004 * 109.47078 * 119.99636 * 2 1 3 32 32 H 1.08992 * 109.47545 * 150.00418 * 4 3 2 33 33 H 1.09003 * 109.47167 * 29.99729 * 4 3 2 34 34 H 0.97001 * 119.99953 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46948 * 300.00552 * 15 13 3 36 36 H 1.08999 * 109.46620 * 60.00272 * 15 13 3 37 37 H 1.00894 * 111.00406 * 56.04913 * 16 15 13 38 38 H 1.08997 * 110.91057 * 257.75396 * 19 17 16 39 39 H 1.09000 * 110.90928 * 21.32548 * 19 17 16 40 40 H 1.09004 * 110.61924 * 81.47611 * 20 19 17 41 41 H 1.08998 * 110.62452 * 204.32019 * 20 19 17 42 42 H 1.09004 * 115.55213 * 153.82679 * 24 22 21 43 43 H 1.09001 * 117.49453 * 359.97438 * 25 24 22 44 44 H 1.08997 * 117.50128 * 145.01722 * 25 24 22 45 45 H 1.08996 * 117.49925 * 214.97659 * 26 24 22 46 46 H 1.08996 * 117.49691 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0719 1.2686 5 6 1.0067 2.7824 1.7036 6 1 0.1159 2.7254 1.0957 7 6 0.9949 3.5050 2.8777 8 7 2.0796 3.5740 3.6184 9 14 -0.5615 4.3862 3.4166 10 1 -1.6546 3.3967 3.5935 11 1 -0.3144 5.0852 4.7033 12 1 -0.9531 5.3767 2.3818 13 6 2.2430 2.0165 -1.1673 14 8 2.6477 3.1598 -1.1674 15 6 1.9923 1.3058 -2.4724 16 7 2.3109 2.2056 -3.5890 17 6 2.0774 1.5453 -4.8803 18 1 1.2719 0.8160 -4.7947 19 6 1.7470 2.5918 -5.9721 20 6 2.5304 2.0459 -7.1930 21 8 3.7419 1.5211 -6.6085 22 6 3.3687 0.8706 -5.3823 23 1 3.1866 -0.1884 -5.5651 24 6 4.4807 1.0386 -4.3449 25 6 5.6360 1.9791 -4.6936 26 6 5.8574 0.4645 -4.6856 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.0644 2.7986 1.1382 33 1 2.5507 1.3453 2.0283 34 1 2.0714 4.0827 4.4443 35 1 2.6228 0.4186 -2.5298 36 1 0.9445 1.0114 -2.5302 37 1 3.2592 2.5437 -3.5217 38 1 0.6766 2.6164 -6.1762 39 1 2.1095 3.5794 -5.6867 40 1 1.9680 1.2534 -7.6868 41 1 2.7564 2.8489 -7.8945 42 1 4.1621 0.9976 -3.3033 43 1 5.6041 2.4778 -5.6623 44 1 6.0776 2.5565 -3.8815 45 1 6.4446 0.0461 -3.8682 46 1 5.9708 -0.0333 -5.6486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375980168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:14 Heat of formation + Delta-G solvation = -61.844974 kcal Electronic energy + Delta-G solvation = -25143.186931 eV Core-core repulsion = 21647.300303 eV Total energy + Delta-G solvation = -3495.886628 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 4.29 seconds Orbital eigenvalues (eV) -41.38494 -40.45459 -37.40957 -37.01976 -36.23508 -34.82525 -32.07081 -31.46569 -30.07349 -29.05926 -26.86931 -24.70419 -24.29143 -23.82351 -23.29106 -22.41133 -20.73303 -19.96558 -18.68103 -18.19007 -17.74286 -17.27356 -17.02853 -16.65826 -16.30810 -16.09599 -15.56487 -15.23707 -15.11973 -14.69246 -14.55472 -14.41754 -14.00590 -13.68817 -13.43771 -13.24856 -13.12326 -12.99976 -12.74964 -12.63454 -12.59440 -12.49366 -12.37797 -12.31414 -12.11704 -11.77310 -11.72299 -11.63479 -11.21978 -11.07257 -10.64108 -10.61697 -10.54507 -9.43617 -9.31693 -8.20228 -6.33296 1.35806 1.40188 1.47071 1.84789 2.26841 2.42085 2.74614 2.86691 3.09333 3.23397 3.59069 3.65934 3.77900 3.88544 4.00503 4.07822 4.16303 4.21123 4.33116 4.33509 4.41123 4.46154 4.52538 4.55604 4.66486 4.73304 4.76857 4.88998 4.94147 4.97623 5.03853 5.05496 5.07602 5.15934 5.19855 5.24604 5.27979 5.52559 5.62021 5.84385 5.90897 6.07389 6.09805 6.28620 6.73758 6.84075 7.31615 7.53139 8.86797 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.003645 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.626664 B = 7680.041737 C = 7857.166739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.103 3.897 3 N -0.604 5.604 4 C 0.262 3.738 5 C -0.532 4.532 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.493 3.507 14 O -0.587 6.587 15 C 0.054 3.946 16 N -0.681 5.681 17 C 0.062 3.938 18 H 0.113 0.887 19 C -0.143 4.143 20 C 0.046 3.954 21 O -0.387 6.387 22 C 0.084 3.916 23 H 0.089 0.911 24 C -0.185 4.185 25 C -0.172 4.172 26 C -0.157 4.157 27 H 0.092 0.908 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.075 0.925 32 H -0.006 1.006 33 H 0.022 0.978 34 H 0.266 0.734 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.351 0.649 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 -12.140 -20.535 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.019 4.019 3 N -0.335 5.335 4 C 0.140 3.860 5 C -0.571 4.571 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.282 3.718 14 O -0.467 6.467 15 C -0.078 4.078 16 N -0.316 5.316 17 C -0.048 4.048 18 H 0.131 0.869 19 C -0.181 4.181 20 C -0.030 4.030 21 O -0.306 6.306 22 C 0.025 3.975 23 H 0.107 0.893 24 C -0.203 4.203 25 C -0.209 4.209 26 C -0.194 4.194 27 H 0.111 0.889 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.012 0.988 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.136 0.864 37 H 0.174 0.826 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.117 0.883 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.551 -11.163 -20.408 23.268 hybrid contribution 0.095 0.425 1.087 1.171 sum -0.456 -10.738 -19.321 22.109 Atomic orbital electron populations 1.22160 0.95463 1.02866 1.01686 1.21759 0.95286 0.81010 1.03846 1.48281 1.64108 1.15025 1.06130 1.18716 0.95366 0.91497 0.80417 1.21669 0.97920 1.31334 1.06171 0.92718 1.25826 0.99720 0.97043 0.96629 1.70049 1.29598 1.42581 1.14840 0.85542 0.79634 0.78817 0.77277 1.18420 1.20465 1.20554 1.21253 0.77504 0.86561 0.86499 1.90647 1.48048 1.20118 1.87903 1.21951 1.04186 0.94401 0.87246 1.60235 1.33379 1.37437 1.00521 1.23112 0.96917 0.95934 0.88873 0.86908 1.23141 1.02144 0.99005 0.93812 1.23697 0.85148 0.98722 0.95447 1.88842 1.31160 1.74729 1.35918 1.22873 0.92979 0.97361 0.84325 0.89292 1.22622 0.90683 1.07966 0.99053 1.22847 1.01338 0.93565 1.03179 1.22949 0.97247 0.95761 1.03415 0.88896 0.94385 0.92834 0.87679 0.90628 0.98765 0.96043 0.92561 0.89802 0.86354 0.82624 0.88409 0.91729 0.90119 0.88052 0.87812 0.88074 0.89792 0.88253 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 10.24 71.98 0.74 -3.74 16 2 C 0.10 3.00 5.98 86.38 0.52 3.51 16 3 N -0.60 -25.14 2.46 -826.14 -2.03 -27.17 16 4 C 0.26 14.17 5.20 85.64 0.45 14.62 16 5 C -0.53 -30.77 8.92 25.60 0.23 -30.54 16 6 H 0.05 3.13 7.42 -2.91 -0.02 3.11 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 9 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 13 C 0.49 20.35 7.71 87.66 0.68 21.03 16 14 O -0.59 -30.93 15.78 -3.03 -0.05 -30.98 16 15 C 0.05 1.46 3.77 85.56 0.32 1.78 16 16 N -0.68 -18.89 5.70 -490.47 -2.80 -21.68 16 17 C 0.06 1.20 3.39 45.90 0.16 1.36 16 18 H 0.11 1.69 7.79 -2.39 -0.02 1.67 16 19 C -0.14 -2.56 6.88 31.89 0.22 -2.34 16 20 C 0.05 0.69 7.72 72.66 0.56 1.25 16 21 O -0.39 -7.91 9.58 -148.98 -1.43 -9.34 16 22 C 0.08 1.59 3.79 30.97 0.12 1.70 16 23 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 24 C -0.18 -4.03 3.99 -10.79 -0.04 -4.07 16 25 C -0.17 -4.00 9.81 30.62 0.30 -3.70 16 26 C -0.16 -3.07 10.21 30.62 0.31 -2.76 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 1.33 7.26 -2.38 -0.02 1.32 16 29 H 0.05 1.41 7.22 -2.39 -0.02 1.39 16 30 H 0.11 2.12 6.44 -2.39 -0.02 2.11 16 31 H 0.08 2.19 7.89 -2.39 -0.02 2.17 16 32 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 33 H 0.02 1.18 7.89 -2.39 -0.02 1.16 16 34 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.08 1.78 5.99 -2.39 -0.01 1.77 16 36 H 0.12 2.75 7.12 -2.39 -0.02 2.73 16 37 H 0.35 11.00 5.78 -89.70 -0.52 10.48 16 38 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.47 8.06 -2.39 -0.02 1.45 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.10 2.54 4.70 -2.38 -0.01 2.53 16 43 H 0.10 2.42 7.07 -2.39 -0.02 2.40 16 44 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -75.45 362.23 1.47 -73.98 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.45 Total: 25.38 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 5.01 Total: -1.06 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.54 Total: -105.57 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -1.47 Total: -40.32 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.45 1.47 -73.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375980168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.136 kcal (2) G-P(sol) polarization free energy of solvation -75.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.29 seconds