Wall clock time and date at job start Tue Mar 31 2020 03:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.46974 * 2 1 4 4 C 1.47008 * 110.99961 * 287.90475 * 3 2 1 5 5 C 1.53094 * 109.25738 * 177.60838 * 4 3 2 6 6 O 1.43018 * 109.25540 * 56.84960 * 5 4 3 7 7 C 1.43017 * 113.77743 * 301.34950 * 6 5 4 8 8 C 1.47018 * 110.99470 * 164.27132 * 3 2 1 9 9 H 1.09002 * 109.50556 * 62.41339 * 8 3 2 10 10 C 1.50698 * 109.50624 * 302.32740 * 8 3 2 11 11 O 1.21288 * 120.00070 * 336.94991 * 10 8 3 12 12 N 1.34775 * 120.00161 * 156.95421 * 10 8 3 13 13 C 1.46926 * 120.63320 * 175.10189 * 12 10 8 14 14 C 1.53195 * 108.77541 * 126.36938 * 13 12 10 15 15 C 1.53048 * 109.30893 * 54.63581 * 14 13 12 16 16 C 1.50696 * 109.45595 * 178.63065 * 15 14 13 17 17 H 1.08002 * 120.00308 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00230 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99671 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00574 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47340 * 89.99473 * 20 18 16 22 22 H 1.48496 * 109.47072 * 209.99849 * 20 18 16 23 23 H 1.48505 * 109.46769 * 329.99430 * 20 18 16 24 24 C 1.53037 * 109.52450 * 298.64043 * 15 14 13 25 25 C 1.46920 * 120.62775 * 355.08216 * 12 10 8 26 26 H 1.09002 * 109.47257 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47386 * 300.00131 * 1 2 3 28 28 H 1.09003 * 109.47306 * 60.00100 * 1 2 3 29 29 H 1.08999 * 109.47083 * 240.00170 * 2 1 3 30 30 H 1.08996 * 109.46667 * 119.99995 * 2 1 3 31 31 H 1.09000 * 109.50558 * 297.54413 * 4 3 2 32 32 H 1.08995 * 109.50946 * 57.63053 * 4 3 2 33 33 H 1.09003 * 109.50917 * 176.78239 * 5 4 3 34 34 H 1.08993 * 109.50906 * 296.87256 * 5 4 3 35 35 H 1.08996 * 109.47824 * 298.69536 * 7 6 5 36 36 H 1.09001 * 109.54953 * 178.56022 * 7 6 5 37 37 H 1.09002 * 109.58358 * 6.58096 * 13 12 10 38 38 H 1.08996 * 109.58794 * 246.16078 * 13 12 10 39 39 H 1.08994 * 109.49585 * 294.68803 * 14 13 12 40 40 H 1.08997 * 109.52077 * 174.60276 * 14 13 12 41 41 H 1.08993 * 109.45939 * 58.65719 * 15 14 13 42 42 H 0.97003 * 120.00055 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.49315 * 181.31083 * 24 15 14 44 44 H 1.08996 * 109.50410 * 301.40622 * 24 15 14 45 45 H 1.09006 * 109.59167 * 353.41659 * 25 12 10 46 46 H 1.09007 * 109.58869 * 113.69982 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7974 2.0224 -1.3060 5 6 2.2663 3.4784 -1.2436 6 8 3.6409 3.5148 -0.8502 7 6 3.8943 2.9029 0.4174 8 6 3.4409 1.4413 0.3721 9 1 4.0321 0.8994 -0.3661 10 6 3.6311 0.8131 1.7286 11 8 2.6986 0.7440 2.5011 12 7 4.8375 0.3280 2.0834 13 6 5.0669 -0.1898 3.4391 14 6 5.6343 -1.6090 3.3355 15 6 6.8822 -1.5916 2.4496 16 6 7.4624 -2.9803 2.3726 17 1 6.9885 -3.7937 2.9020 18 6 8.5983 -3.2125 1.6265 19 7 9.1752 -2.2221 0.9815 20 14 9.3180 -4.9336 1.5315 21 1 8.7163 -5.6592 0.3842 22 1 10.7886 -4.8456 1.3454 23 1 9.0213 -5.6643 2.7899 24 6 6.5052 -1.1180 1.0441 25 6 5.9480 0.3066 1.1217 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 2.3625 1.4905 -2.0714 32 1 0.7356 1.9915 -1.5501 33 1 2.1565 3.9386 -2.2256 34 1 1.6645 4.0238 -0.5167 35 1 3.3409 3.4318 1.1934 36 1 4.9611 2.9463 0.6366 37 1 4.1243 -0.2120 3.9861 38 1 5.7786 0.4512 3.9595 39 1 4.8858 -2.2688 2.8967 40 1 5.8988 -1.9690 4.3297 41 1 7.6206 -0.9126 2.8758 42 1 9.9741 -2.3854 0.4562 43 1 7.3899 -1.1280 0.4073 44 1 5.7486 -1.7824 0.6269 45 1 5.5868 0.6117 0.1395 46 1 6.7305 0.9899 1.4517 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541979474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:30 Heat of formation + Delta-G solvation = -91.342332 kcal Electronic energy + Delta-G solvation = -25789.252352 eV Core-core repulsion = 22292.086623 eV Total energy + Delta-G solvation = -3497.165729 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83801 -40.03751 -38.42084 -37.00918 -35.37905 -33.62668 -32.39056 -31.87639 -31.56908 -28.25496 -27.57939 -26.04128 -24.54566 -23.95111 -23.10677 -22.19136 -21.05728 -19.86769 -18.74936 -18.10275 -17.69054 -17.51617 -16.70615 -16.52168 -16.18014 -16.06481 -15.74157 -15.35847 -15.16669 -14.92602 -14.63201 -14.55034 -14.37049 -13.92021 -13.83299 -13.29501 -13.22363 -13.10266 -12.90515 -12.81653 -12.71967 -12.47209 -12.41527 -12.15882 -12.00737 -11.85608 -11.59017 -11.50163 -11.03593 -11.02240 -10.85199 -10.55538 -10.40227 -9.59220 -9.44578 -8.09213 -6.22203 1.40194 1.42675 1.47528 1.51332 1.89338 2.43161 2.60916 2.85401 3.17570 3.43299 3.67428 3.77925 3.89454 4.01662 4.10646 4.22530 4.24255 4.31746 4.34510 4.40581 4.44445 4.50508 4.55815 4.58195 4.59131 4.71059 4.74918 4.83863 4.91429 4.93880 4.96026 5.03710 5.17022 5.20667 5.28406 5.40049 5.49751 5.63106 5.75577 5.92365 5.96977 6.02848 6.10414 6.37610 6.44212 6.87016 7.11555 7.45681 8.94239 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.004024 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.746934 B = 6955.805384 C = 7159.212879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.046 3.954 3 N -0.526 5.526 4 C 0.017 3.983 5 C 0.057 3.943 6 O -0.388 6.388 7 C 0.085 3.915 8 C 0.034 3.966 9 H 0.073 0.927 10 C 0.520 3.480 11 O -0.561 6.561 12 N -0.601 5.601 13 C 0.118 3.882 14 C -0.113 4.113 15 C 0.046 3.954 16 C -0.536 4.536 17 H 0.046 0.954 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.947 3.053 21 H -0.278 1.278 22 H -0.282 1.282 23 H -0.273 1.273 24 C -0.114 4.114 25 C 0.111 3.889 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.007 0.993 42 H 0.262 0.738 43 H 0.081 0.919 44 H 0.023 0.977 45 H 0.090 0.910 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.998 10.474 -5.694 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.081 4.081 3 N -0.252 5.252 4 C -0.111 4.111 5 C -0.019 4.019 6 O -0.306 6.306 7 C 0.007 3.993 8 C -0.078 4.078 9 H 0.090 0.910 10 C 0.308 3.692 11 O -0.440 6.440 12 N -0.334 5.334 13 C -0.004 4.004 14 C -0.151 4.151 15 C 0.028 3.972 16 C -0.574 4.574 17 H 0.064 0.936 18 C -0.179 4.179 19 N -0.550 5.550 20 Si 0.773 3.227 21 H -0.204 1.204 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.153 4.153 25 C -0.011 4.011 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.130 0.870 33 H 0.146 0.854 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.042 0.958 45 H 0.108 0.892 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.453 10.820 -5.157 18.018 hybrid contribution 1.051 -1.969 -0.356 2.260 sum -12.403 8.851 -5.513 16.204 Atomic orbital electron populations 1.21635 0.92672 1.02144 1.02491 1.22161 0.98109 0.87902 0.99966 1.62051 1.14194 1.18726 1.30238 1.23002 1.03666 0.95964 0.88444 1.22948 0.81576 0.94863 1.02526 1.88008 1.27691 1.78544 1.36402 1.22466 1.02155 0.88097 0.86589 1.22330 0.91750 0.99545 0.94217 0.90980 1.20464 0.81815 0.78051 0.88920 1.90638 1.40677 1.58599 1.54066 1.48305 1.11132 1.60103 1.13866 1.21613 1.01031 0.94938 0.82849 1.21844 0.97908 0.94982 1.00354 1.18599 0.91672 0.94984 0.91964 1.21540 1.10532 0.95531 1.29798 0.93574 1.25602 0.97057 1.00040 0.95228 1.69936 1.20711 1.32197 1.32170 0.85730 0.77599 0.81012 0.78346 1.20425 1.20758 1.19756 1.21776 0.99583 0.93075 1.00842 1.21991 0.88267 0.98684 0.92111 0.91510 0.92891 0.91012 0.94593 0.92955 0.93814 0.86997 0.85408 0.91787 0.91975 0.86962 0.90103 0.90619 0.94329 0.91694 0.97449 0.92886 0.90102 0.95801 0.89163 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.96 71.98 0.72 -2.04 16 2 C 0.05 1.22 5.32 86.30 0.46 1.68 16 3 N -0.53 -13.54 4.22 -874.40 -3.69 -17.24 16 4 C 0.02 0.31 5.47 86.31 0.47 0.78 16 5 C 0.06 0.99 7.01 72.01 0.50 1.50 16 6 O -0.39 -8.97 10.82 -148.98 -1.61 -10.59 16 7 C 0.08 2.07 6.28 72.02 0.45 2.52 16 8 C 0.03 0.93 1.59 44.18 0.07 1.00 16 9 H 0.07 2.03 6.14 -2.39 -0.01 2.02 16 10 C 0.52 17.51 5.79 87.66 0.51 18.02 16 11 O -0.56 -22.00 14.65 -3.06 -0.04 -22.04 16 12 N -0.60 -20.62 2.97 -818.95 -2.43 -23.05 16 13 C 0.12 4.16 6.44 86.36 0.56 4.71 16 14 C -0.11 -4.58 5.30 30.68 0.16 -4.42 16 15 C 0.05 2.20 2.06 -11.51 -0.02 2.17 16 16 C -0.54 -28.68 8.56 25.60 0.22 -28.46 16 17 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 18 C 0.02 1.06 5.30 84.65 0.45 1.51 16 19 N -0.91 -49.73 11.31 21.45 0.24 -49.48 16 20 Si 0.95 42.53 29.54 68.60 2.03 44.55 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 C -0.11 -4.99 5.15 30.66 0.16 -4.83 16 25 C 0.11 3.79 6.13 86.35 0.53 4.32 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.07 1.18 6.73 -2.39 -0.02 1.16 16 29 H 0.04 0.90 8.05 -2.39 -0.02 0.88 16 30 H 0.05 1.73 5.80 -2.39 -0.01 1.72 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 1.63 6.63 -2.39 -0.02 1.61 16 33 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 2.53 7.96 -2.39 -0.02 2.51 16 37 H 0.08 2.85 7.00 -2.39 -0.02 2.83 16 38 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 2.54 8.14 -2.39 -0.02 2.53 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.26 13.67 8.31 -92.71 -0.77 12.89 16 43 H 0.08 3.96 6.04 -2.38 -0.01 3.95 16 44 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.09 2.66 5.41 -2.38 -0.01 2.65 16 46 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -62.23 348.71 0.67 -61.56 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.95 Total: 17.82 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.23 Total: -1.54 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -5.88 Total: -89.78 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.66 Total: -32.63 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -62.23 0.67 -61.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541979474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.778 kcal (2) G-P(sol) polarization free energy of solvation -62.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds