Wall clock time and date at job start Tue Mar 31 2020 03:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00095 * 2 1 4 4 H 1.08994 * 110.28790 * 30.67348 * 3 2 1 5 5 C 1.54382 * 110.32225 * 268.54229 * 3 2 1 6 6 N 1.48566 * 104.59388 * 217.14686 * 5 3 2 7 7 C 1.48566 * 104.21933 * 39.48832 * 6 5 3 8 8 H 1.08999 * 110.40957 * 79.41249 * 7 6 5 9 9 C 1.50691 * 110.40808 * 201.73477 * 7 6 5 10 10 O 1.21283 * 120.00382 * 16.94909 * 9 7 6 11 11 N 1.34779 * 120.00268 * 196.95106 * 9 7 6 12 12 C 1.46995 * 120.60954 * 0.02562 * 11 9 7 13 13 C 1.53196 * 108.73708 * 126.39083 * 12 11 9 14 14 C 1.53039 * 109.33748 * 54.62190 * 13 12 11 15 15 C 1.53002 * 109.45721 * 178.59861 * 14 13 12 16 16 C 1.50699 * 109.46838 * 185.00118 * 15 14 13 17 17 H 1.08002 * 120.00310 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00230 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99886 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00447 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46585 * 60.00418 * 20 18 16 22 22 H 1.48504 * 109.47251 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47515 * 300.00434 * 20 18 16 24 24 C 1.53033 * 109.54130 * 298.61926 * 14 13 12 25 25 C 1.46925 * 120.63449 * 180.02562 * 11 9 7 26 26 C 1.54382 * 104.69663 * 320.57317 * 7 6 5 27 27 H 1.09000 * 109.46996 * 60.00215 * 1 2 3 28 28 H 1.08997 * 109.47519 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46997 * 300.00231 * 1 2 3 30 30 H 1.09001 * 110.40384 * 98.37328 * 5 3 2 31 31 H 1.08992 * 110.51473 * 335.98326 * 5 3 2 32 32 H 1.00895 * 111.00011 * 279.92790 * 6 5 3 33 33 H 1.09001 * 109.63157 * 6.60495 * 12 11 9 34 34 H 1.08996 * 109.58534 * 246.14994 * 12 11 9 35 35 H 1.09002 * 109.49815 * 294.65503 * 13 12 11 36 36 H 1.09000 * 109.49595 * 174.58900 * 13 12 11 37 37 H 1.09007 * 109.45874 * 58.62520 * 14 13 12 38 38 H 1.08995 * 109.47215 * 304.99925 * 15 14 13 39 39 H 1.08999 * 109.47162 * 65.00175 * 15 14 13 40 40 H 0.96998 * 120.00486 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.50670 * 181.31633 * 24 14 13 42 42 H 1.08998 * 109.50149 * 301.38469 * 24 14 13 43 43 H 1.09004 * 109.58683 * 113.84331 * 25 11 9 44 44 H 1.08994 * 109.70376 * 353.48184 * 25 11 9 45 45 H 1.09007 * 110.32073 * 142.69402 * 26 7 6 46 46 H 1.09004 * 110.32380 * 264.89662 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3607 2.0084 0.5215 5 6 2.2619 1.7803 -1.4473 6 7 3.5437 2.5283 -1.3782 7 6 4.3811 1.7319 -0.4446 8 1 4.8087 0.8706 -0.9579 9 6 5.4735 2.5882 0.1422 10 8 5.3949 3.7970 0.0819 11 7 6.5378 2.0108 0.7342 12 6 6.6471 0.5471 0.8143 13 6 7.9973 0.1217 0.2288 14 6 9.1202 0.8763 0.9440 15 6 10.4721 0.4277 0.3854 16 6 11.5812 1.0778 1.1716 17 1 11.3455 1.7440 1.9884 18 6 12.8969 0.8214 0.8491 19 7 13.1841 0.0090 -0.1445 20 14 14.2718 1.6278 1.8232 21 1 14.1678 1.2283 3.2498 22 1 15.5840 1.1914 1.2819 23 1 14.1566 3.1042 1.7130 24 6 8.9498 2.3805 0.7199 25 6 7.6105 2.8323 1.3114 26 6 3.4061 1.2710 0.6601 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.4564 2.4361 -1.7776 31 1 2.3555 0.9267 -2.1185 32 1 3.3986 3.4627 -1.0264 33 1 5.8402 0.0879 0.2432 34 1 6.5852 0.2326 1.8560 35 1 8.0222 0.3556 -0.8356 36 1 8.1329 -0.9507 0.3689 37 1 9.0792 0.6616 2.0119 38 1 10.5569 -0.6560 0.4656 39 1 10.5483 0.7216 -0.6615 40 1 14.1097 -0.1711 -0.3718 41 1 9.7629 2.9160 1.2099 42 1 8.9663 2.5933 -0.3490 43 1 7.6270 2.7039 2.3937 44 1 7.4399 3.8816 1.0704 45 1 3.6500 0.2585 0.9820 46 1 3.4413 1.9569 1.5065 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563170176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:42 Heat of formation + Delta-G solvation = -88.060918 kcal Electronic energy + Delta-G solvation = -24646.480705 eV Core-core repulsion = 21149.457268 eV Total energy + Delta-G solvation = -3497.023437 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63439 -39.06238 -37.48784 -36.32056 -34.07463 -32.16750 -31.05320 -29.97301 -29.25430 -27.86166 -26.63646 -24.77287 -23.53938 -22.45773 -21.71735 -21.15995 -19.76624 -18.87783 -17.65021 -16.91587 -16.54531 -16.23106 -15.83361 -15.35902 -15.14581 -14.62172 -14.53539 -14.12762 -13.81224 -13.60089 -13.42597 -13.23634 -12.87478 -12.80455 -12.77744 -12.20174 -12.13658 -11.95163 -11.83752 -11.68751 -11.18035 -11.07710 -11.01561 -10.75838 -10.68235 -10.43562 -10.23812 -10.19239 -9.70153 -9.62260 -9.27445 -8.98126 -8.94448 -8.39567 -8.34174 -5.99643 -4.01639 2.55847 3.02636 3.32308 3.33008 3.37918 3.39867 3.95191 4.18060 4.35915 4.45728 4.54990 4.77473 4.85415 4.89533 4.95749 4.99802 5.10977 5.25754 5.30332 5.34303 5.35618 5.41185 5.49891 5.53300 5.58093 5.64774 5.66267 5.80550 5.96540 6.04120 6.20397 6.34577 6.35877 6.52467 6.64374 6.78522 6.97516 7.00990 7.04398 7.11199 7.50772 7.66037 7.80996 7.99777 8.19084 8.42236 9.04540 9.62198 11.11600 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.034207 B = 0.002863 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.361080 B = 9776.788379 C =10121.030579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.055 3.945 4 H 0.069 0.931 5 C 0.019 3.981 6 N -0.644 5.644 7 C 0.053 3.947 8 H 0.116 0.884 9 C 0.519 3.481 10 O -0.545 6.545 11 N -0.599 5.599 12 C 0.104 3.896 13 C -0.132 4.132 14 C -0.080 4.080 15 C 0.028 3.972 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.118 4.118 25 C 0.109 3.891 26 C -0.143 4.143 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.352 0.648 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.611 0.417 1.144 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C -0.004 4.004 4 H 0.087 0.913 5 C -0.111 4.111 6 N -0.275 5.275 7 C -0.060 4.060 8 H 0.133 0.867 9 C 0.306 3.694 10 O -0.423 6.423 11 N -0.332 5.332 12 C -0.019 4.019 13 C -0.170 4.170 14 C -0.099 4.099 15 C -0.009 4.009 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.156 4.156 25 C -0.013 4.013 26 C -0.182 4.182 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.171 0.829 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.114 0.886 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.072 0.608 0.367 24.083 hybrid contribution 0.297 0.638 1.388 1.556 sum -23.775 1.246 1.755 23.872 Atomic orbital electron populations 1.22802 0.80977 1.02929 0.99979 1.87956 1.19718 1.26962 1.94973 1.23655 0.94624 0.85178 0.96989 0.91313 1.23614 0.91892 0.99449 0.96162 1.63286 1.11085 1.05719 1.47365 1.22645 0.93407 0.97158 0.92830 0.86660 1.20283 0.82805 0.88418 0.77897 1.90661 1.78449 1.14455 1.58751 1.48147 1.20706 1.07610 1.56710 1.21937 0.99317 0.79121 1.01484 1.22047 0.93645 1.00679 1.00596 1.21192 0.96297 0.93308 0.99114 1.19115 0.89187 0.96367 0.96215 1.21198 0.90904 1.27435 1.15988 0.92665 1.25018 0.98900 0.95300 0.95230 1.69950 1.18823 1.36088 1.28651 0.86703 0.81406 0.79841 0.80313 1.20311 1.21367 1.20259 1.21899 0.94811 0.97709 1.01168 1.21808 0.86771 0.95643 0.97094 1.22896 0.93042 1.04064 0.98201 0.93916 0.89462 0.94070 0.90290 0.88893 0.82946 0.90310 0.91243 0.91838 0.90925 0.92347 0.96596 0.96614 0.92987 0.89744 0.92276 0.91821 0.89650 0.88599 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.86 101.05 1.10 1.28 16 2 O -0.38 -3.45 10.31 -35.23 -0.36 -3.81 16 3 C 0.06 0.47 3.52 -25.25 -0.09 0.38 16 4 H 0.07 0.51 7.84 -51.93 -0.41 0.10 16 5 C 0.02 0.17 7.20 -2.18 -0.02 0.15 16 6 N -0.64 -7.33 7.35 -103.95 -0.76 -8.09 16 7 C 0.05 0.60 2.65 -67.22 -0.18 0.42 16 8 H 0.12 1.29 6.63 -51.93 -0.34 0.95 16 9 C 0.52 7.54 6.87 -10.99 -0.08 7.46 16 10 O -0.55 -9.55 15.28 5.55 0.08 -9.46 16 11 N -0.60 -8.56 2.97 -172.70 -0.51 -9.08 16 12 C 0.10 1.30 6.24 -3.67 -0.02 1.27 16 13 C -0.13 -2.04 5.36 -26.61 -0.14 -2.18 16 14 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 16 C -0.52 -14.06 8.39 -34.44 -0.29 -14.35 16 17 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 20 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.12 -2.14 5.19 -26.60 -0.14 -2.28 16 25 C 0.11 1.69 6.43 -3.70 -0.02 1.66 16 26 C -0.14 -1.35 6.11 -25.25 -0.15 -1.51 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.21 8.10 -51.93 -0.42 -0.21 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 32 H 0.35 4.16 7.79 -39.29 -0.31 3.85 16 33 H 0.08 0.81 5.23 -51.93 -0.27 0.53 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.08 1.64 6.91 -51.93 -0.36 1.28 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.39 7.01 -51.93 -0.36 1.02 16 45 H 0.10 0.87 7.77 -51.92 -0.40 0.46 16 46 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -31.62 359.05 -8.73 -40.35 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.86 Total: 1.50 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -0.44 Total: -7.33 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.54 Total: -43.07 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.28 Total: -13.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.62 -8.73 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563170176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.709 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds