Wall clock time and date at job start Tue Mar 31 2020 03:52:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.35320 * 126.12297 * 2 1
4 4 C 1.50693 * 126.04350 * 0.02562 * 3 2 1
5 5 N 1.46901 * 109.47360 * 80.00136 * 4 3 2
6 6 C 1.46899 * 111.00076 * 180.02562 * 5 4 3
7 7 C 1.52996 * 109.46798 * 179.97438 * 6 5 4
8 8 H 1.09000 * 109.47555 * 304.99556 * 7 6 5
9 9 O 1.42901 * 109.47612 * 65.00079 * 7 6 5
10 10 C 1.53000 * 109.47000 * 185.00066 * 7 6 5
11 11 N 1.46905 * 109.47114 * 180.02562 * 10 7 6
12 12 C 1.46900 * 110.99850 * 293.94896 * 11 10 7
13 13 C 1.46906 * 111.00051 * 169.99929 * 11 10 7
14 14 C 1.50699 * 109.47140 * 189.99841 * 13 11 10
15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 11
16 16 C 1.37873 * 119.99861 * 180.02562 * 14 13 11
17 17 N 1.31513 * 119.99892 * 180.02562 * 16 14 13
18 18 Si 1.86805 * 120.00241 * 359.97438 * 16 14 13
19 19 H 1.48499 * 109.47135 * 90.00125 * 18 16 14
20 20 H 1.48503 * 109.47215 * 210.00315 * 18 16 14
21 21 H 1.48508 * 109.46958 * 330.00276 * 18 16 14
22 22 C 1.39874 * 107.91364 * 180.28151 * 3 2 1
23 23 N 1.30832 * 108.20452 * 359.55404 * 22 3 2
24 24 N 1.34945 * 126.12588 * 180.02562 * 2 1 3
25 25 C 1.46494 * 126.04011 * 359.96140 * 24 2 1
26 26 H 1.08998 * 109.46974 * 90.00369 * 1 2 3
27 27 H 1.08993 * 109.46989 * 210.00182 * 1 2 3
28 28 H 1.08998 * 109.46914 * 330.00616 * 1 2 3
29 29 H 1.09005 * 109.47183 * 319.99931 * 4 3 2
30 30 H 1.09001 * 109.47380 * 200.00281 * 4 3 2
31 31 H 1.00896 * 110.99720 * 56.04006 * 5 4 3
32 32 H 1.08995 * 109.47186 * 60.00137 * 6 5 4
33 33 H 1.08998 * 109.47052 * 299.99451 * 6 5 4
34 34 H 0.96697 * 113.99735 * 59.99435 * 9 7 6
35 35 H 1.08997 * 109.47704 * 60.00204 * 10 7 6
36 36 H 1.09000 * 109.47058 * 299.99530 * 10 7 6
37 37 H 1.08996 * 109.47030 * 296.04770 * 12 11 10
38 38 H 1.08999 * 109.46702 * 56.04909 * 12 11 10
39 39 H 1.08996 * 109.46890 * 176.04778 * 12 11 10
40 40 H 1.09004 * 109.47040 * 309.99779 * 13 11 10
41 41 H 1.09000 * 109.47033 * 69.99731 * 13 11 10
42 42 H 0.97002 * 119.99998 * 180.02562 * 17 16 14
43 43 H 1.08005 * 125.89329 * 179.73782 * 22 3 2
44 44 H 1.09007 * 109.46965 * 89.99697 * 25 24 2
45 45 H 1.08994 * 109.47376 * 209.99771 * 25 24 2
46 46 H 1.09002 * 109.47445 * 329.99908 * 25 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3048 1.0931 0.0000
4 6 1.8433 2.5276 0.0005
5 7 1.4649 2.9198 1.3647
6 6 1.0081 4.3154 1.4037
7 6 0.6231 4.6861 2.8373
8 1 -0.1155 3.9765 3.2102
9 8 1.7849 4.6452 3.6683
10 6 0.0309 6.0966 2.8578
11 7 -0.3382 6.4528 4.2344
12 6 -1.4355 5.6060 4.7210
13 6 -0.6877 7.8762 4.3342
14 6 -0.8204 8.2603 5.7854
15 1 -0.6615 7.5208 6.5564
16 6 -1.1457 9.5553 6.1288
17 7 -1.2610 9.8906 7.3952
18 14 -1.4212 10.8341 4.7952
19 1 -2.8539 10.8413 4.4047
20 1 -1.0414 12.1747 5.3088
21 1 -0.5873 10.5029 3.6119
22 6 3.6335 0.6560 -0.0065
23 7 3.6334 -0.6523 -0.0007
24 7 2.3026 -1.0900 -0.0005
25 6 1.8540 -2.4845 -0.0003
26 1 -0.3633 -0.0001 -1.0277
27 1 -0.3633 -0.8899 0.5138
28 1 -0.3633 0.8900 0.5137
29 1 0.9823 2.6326 -0.6597
30 1 2.6511 3.1693 -0.3511
31 1 2.2273 2.7703 2.0085
32 1 0.1413 4.4323 0.7534
33 1 1.8099 4.9698 1.0617
34 1 2.4857 5.2528 3.3948
35 1 -0.8554 6.1279 2.2240
36 1 0.7695 6.8063 2.4849
37 1 -2.3285 5.7895 4.1235
38 1 -1.1504 4.5574 4.6359
39 1 -1.6418 5.8429 5.7647
40 1 0.0951 8.4760 3.8698
41 1 -1.6337 8.0548 3.8231
42 1 -1.4903 10.8017 7.6368
43 1 4.5084 1.2892 -0.0122
44 1 1.7421 -2.8303 -1.0280
45 1 2.5901 -3.1030 0.5130
46 1 0.8957 -2.5579 0.5141
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000573199334.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:52:43
Heat of formation + Delta-G solvation = 34.829848 kcal
Electronic energy + Delta-G solvation = -23596.033734 eV
Core-core repulsion = 20136.631992 eV
Total energy + Delta-G solvation = -3459.401742 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.195 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.53125 -38.37715 -36.21719 -35.13557 -33.67171 -32.48001 -32.31471 -30.10591
-28.34617 -27.42571 -26.96961 -25.87431 -24.22700 -22.81767 -21.23109 -21.01307
-20.08866 -19.60205 -16.98217 -16.76617 -16.35389 -16.03045 -15.92764 -15.17476
-14.74627 -14.61761 -14.55062 -14.15730 -13.98056 -13.60256 -13.52484 -13.45537
-13.03522 -12.79307 -12.70471 -12.52474 -12.36803 -12.21892 -12.09961 -11.76761
-11.57530 -11.22464 -10.96991 -10.74906 -10.70273 -10.66840 -10.22685 -9.90371
-9.56817 -9.49418 -9.21420 -8.65754 -8.56236 -8.40673 -7.31297 -6.03036
-4.00019 1.62387 2.24911 2.51540 3.28107 3.35772 3.37138 4.11449
4.22556 4.42210 4.42824 4.64762 4.73968 4.76520 4.87397 4.88676
5.02277 5.08910 5.13666 5.20190 5.23865 5.26334 5.32271 5.44218
5.53153 5.62356 5.64689 5.69205 5.71783 5.97062 6.00414 6.14625
6.26918 6.36775 6.40740 6.72900 6.77180 6.85689 6.92640 7.01989
7.33812 7.47995 7.61248 7.92311 7.95843 8.11956 8.68802 9.07015
9.58551 11.10197
Molecular weight = 296.20amu
Principal moments of inertia in cm(-1)
A = 0.036428 B = 0.002322 C = 0.002300
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 768.461131 B =12056.022564 C =12169.120983
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.094 4.094
2 C 0.109 3.891
3 C -0.241 4.241
4 C 0.140 3.860
5 N -0.682 5.682
6 C 0.027 3.973
7 C 0.114 3.886
8 H 0.104 0.896
9 O -0.545 6.545
10 C 0.021 3.979
11 N -0.520 5.520
12 C 0.036 3.964
13 C 0.162 3.838
14 C -0.507 4.507
15 H 0.081 0.919
16 C 0.066 3.934
17 N -0.900 5.900
18 Si 0.876 3.124
19 H -0.278 1.278
20 H -0.286 1.286
21 H -0.268 1.268
22 C 0.056 3.944
23 N -0.303 5.303
24 N -0.377 5.377
25 C 0.101 3.899
26 H 0.076 0.924
27 H 0.067 0.933
28 H 0.098 0.902
29 H 0.073 0.927
30 H 0.035 0.965
31 H 0.349 0.651
32 H 0.077 0.923
33 H 0.031 0.969
34 H 0.367 0.633
35 H 0.029 0.971
36 H 0.068 0.932
37 H 0.009 0.991
38 H 0.051 0.949
39 H 0.078 0.922
40 H 0.026 0.974
41 H -0.018 1.018
42 H 0.263 0.737
43 H 0.180 0.820
44 H 0.073 0.927
45 H 0.088 0.912
46 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.741 -20.994 -19.414 28.985
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.020 4.020
3 C -0.253 4.253
4 C 0.010 3.990
5 N -0.314 5.314
6 C -0.103 4.103
7 C 0.054 3.946
8 H 0.121 0.879
9 O -0.348 6.348
10 C -0.108 4.108
11 N -0.243 5.243
12 C -0.112 4.112
13 C 0.036 3.964
14 C -0.545 4.545
15 H 0.100 0.900
16 C -0.135 4.135
17 N -0.540 5.540
18 Si 0.703 3.297
19 H -0.204 1.204
20 H -0.212 1.212
21 H -0.193 1.193
22 C -0.130 4.130
23 N -0.123 5.123
24 N -0.160 5.160
25 C -0.041 4.041
26 H 0.095 0.905
27 H 0.086 0.914
28 H 0.116 0.884
29 H 0.091 0.909
30 H 0.053 0.947
31 H 0.168 0.832
32 H 0.095 0.905
33 H 0.050 0.950
34 H 0.213 0.787
35 H 0.048 0.952
36 H 0.086 0.914
37 H 0.028 0.972
38 H 0.069 0.931
39 H 0.097 0.903
40 H 0.044 0.956
41 H -0.001 1.001
42 H 0.073 0.927
43 H 0.197 0.803
44 H 0.091 0.909
45 H 0.107 0.893
46 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 4.798 -22.842 -18.718 29.919
hybrid contribution -0.221 2.566 -1.634 3.050
sum 4.576 -20.276 -20.352 29.091
Atomic orbital electron populations
1.20508 0.87168 1.04587 1.02982 1.20881 0.94598 0.86778 0.99710
1.19684 0.92117 0.95267 1.18221 1.20082 0.98566 0.89736 0.90626
1.60445 1.42870 1.20850 1.07252 1.22684 1.00109 0.88806 0.98668
1.21964 0.88274 0.96242 0.88088 0.87865 1.86621 1.27156 1.64967
1.56079 1.22767 0.99440 0.96606 0.92028 1.61864 1.39222 1.05790
1.17447 1.22277 0.91098 0.95974 1.01869 1.20211 0.93659 0.84140
0.98439 1.21046 1.46499 0.96291 0.90650 0.90049 1.24915 0.95181
0.98197 0.95193 1.69896 1.49024 1.19125 1.15923 0.86856 0.78746
0.81404 0.82647 1.20414 1.21158 1.19312 1.23768 0.97660 0.92117
0.99480 1.77358 0.96616 1.12953 1.25374 1.48414 1.04022 1.05995
1.57566 1.21822 1.01107 0.77961 1.03181 0.90547 0.91379 0.88360
0.90886 0.94716 0.83153 0.90473 0.95031 0.78683 0.95246 0.91355
0.97214 0.93058 0.90313 0.95605 1.00066 0.92701 0.80297 0.90895
0.89326 0.89501
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.63 9.89 36.01 0.36 -0.28 16
2 C 0.11 1.03 6.93 -82.26 -0.57 0.46 16
3 C -0.24 -2.41 5.61 -105.05 -0.59 -3.00 16
4 C 0.14 1.26 5.68 -4.98 -0.03 1.23 16
5 N -0.68 -7.00 6.49 -115.06 -0.75 -7.75 16
6 C 0.03 0.29 5.36 -3.83 -0.02 0.27 16
7 C 0.11 1.55 3.08 -26.73 -0.08 1.47 16
8 H 0.10 1.52 6.47 -51.93 -0.34 1.19 16
9 O -0.54 -8.10 12.72 -35.23 -0.45 -8.55 16
10 C 0.02 0.35 4.62 -3.82 -0.02 0.33 16
11 N -0.52 -10.92 4.62 -244.36 -1.13 -12.05 16
12 C 0.04 0.71 9.16 60.06 0.55 1.26 16
13 C 0.16 3.95 3.79 -4.97 -0.02 3.94 16
14 C -0.51 -14.58 9.07 -34.44 -0.31 -14.89 16
15 H 0.08 2.56 7.35 -52.48 -0.39 2.18 16
16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16
17 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16
18 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16
19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
21 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16
22 C 0.06 0.58 11.96 -17.37 -0.21 0.37 16
23 N -0.30 -3.55 12.58 30.63 0.39 -3.17 16
24 N -0.38 -3.69 4.01 -63.89 -0.26 -3.95 16
25 C 0.10 0.56 11.27 59.84 0.67 1.24 16
26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
27 H 0.07 0.36 7.08 -51.93 -0.37 -0.01 16
28 H 0.10 0.75 7.88 -51.93 -0.41 0.34 16
29 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16
30 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16
31 H 0.35 3.91 8.28 -39.29 -0.33 3.58 16
32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16
34 H 0.37 4.41 9.04 45.56 0.41 4.83 16
35 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16
36 H 0.07 1.07 7.93 -51.93 -0.41 0.65 16
37 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16
38 H 0.05 0.88 6.30 -51.93 -0.33 0.56 16
39 H 0.08 1.73 6.86 -51.93 -0.36 1.37 16
40 H 0.03 0.64 6.99 -51.93 -0.36 0.27 16
41 H -0.02 -0.45 7.55 -51.93 -0.39 -0.84 16
42 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16
43 H 0.18 1.40 8.06 -52.48 -0.42 0.97 16
44 H 0.07 0.31 8.14 -51.92 -0.42 -0.12 16
45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
46 H 0.09 0.31 7.05 -51.93 -0.37 -0.05 16
LS Contribution 372.91 15.07 5.62 5.62
Total: -1.00 -34.44 372.91 -7.86 -42.29
By element:
Atomic # 1 Polarization: 10.45 SS G_CDS: -7.02 Total: 3.43 kcal
Atomic # 6 Polarization: -5.39 SS G_CDS: -0.36 Total: -5.76 kcal
Atomic # 7 Polarization: -52.98 SS G_CDS: -0.97 Total: -53.95 kcal
Atomic # 8 Polarization: -8.10 SS G_CDS: -0.45 Total: -8.55 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -34.44 -7.86 -42.29 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000573199334.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.123 kcal
(2) G-P(sol) polarization free energy of solvation -34.438 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.686 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.830 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds