Wall clock time and date at job start Tue Mar 31 2020 03:52:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.35320 * 126.12297 * 2 1
4 4 C 1.50693 * 126.04350 * 0.02562 * 3 2 1
5 5 N 1.46901 * 109.47360 * 80.00136 * 4 3 2
6 6 C 1.46899 * 111.00076 * 180.02562 * 5 4 3
7 7 C 1.52996 * 109.46798 * 179.97438 * 6 5 4
8 8 H 1.09000 * 109.47555 * 304.99556 * 7 6 5
9 9 O 1.42901 * 109.47612 * 65.00079 * 7 6 5
10 10 C 1.53000 * 109.47000 * 185.00066 * 7 6 5
11 11 N 1.46905 * 109.47114 * 180.02562 * 10 7 6
12 12 C 1.46900 * 110.99850 * 293.94896 * 11 10 7
13 13 C 1.46906 * 111.00051 * 169.99929 * 11 10 7
14 14 C 1.50699 * 109.47140 * 189.99841 * 13 11 10
15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 11
16 16 C 1.37873 * 119.99861 * 180.02562 * 14 13 11
17 17 N 1.31513 * 119.99892 * 180.02562 * 16 14 13
18 18 Si 1.86805 * 120.00241 * 359.97438 * 16 14 13
19 19 H 1.48499 * 109.47135 * 90.00125 * 18 16 14
20 20 H 1.48503 * 109.47215 * 210.00315 * 18 16 14
21 21 H 1.48508 * 109.46958 * 330.00276 * 18 16 14
22 22 C 1.39874 * 107.91364 * 180.28151 * 3 2 1
23 23 N 1.30832 * 108.20452 * 359.55404 * 22 3 2
24 24 N 1.34945 * 126.12588 * 180.02562 * 2 1 3
25 25 C 1.46494 * 126.04011 * 359.96140 * 24 2 1
26 26 H 1.08998 * 109.46974 * 90.00369 * 1 2 3
27 27 H 1.08993 * 109.46989 * 210.00182 * 1 2 3
28 28 H 1.08998 * 109.46914 * 330.00616 * 1 2 3
29 29 H 1.09005 * 109.47183 * 319.99931 * 4 3 2
30 30 H 1.09001 * 109.47380 * 200.00281 * 4 3 2
31 31 H 1.00896 * 110.99720 * 56.04006 * 5 4 3
32 32 H 1.08995 * 109.47186 * 60.00137 * 6 5 4
33 33 H 1.08998 * 109.47052 * 299.99451 * 6 5 4
34 34 H 0.96697 * 113.99735 * 59.99435 * 9 7 6
35 35 H 1.08997 * 109.47704 * 60.00204 * 10 7 6
36 36 H 1.09000 * 109.47058 * 299.99530 * 10 7 6
37 37 H 1.08996 * 109.47030 * 296.04770 * 12 11 10
38 38 H 1.08999 * 109.46702 * 56.04909 * 12 11 10
39 39 H 1.08996 * 109.46890 * 176.04778 * 12 11 10
40 40 H 1.09004 * 109.47040 * 309.99779 * 13 11 10
41 41 H 1.09000 * 109.47033 * 69.99731 * 13 11 10
42 42 H 0.97002 * 119.99998 * 180.02562 * 17 16 14
43 43 H 1.08005 * 125.89329 * 179.73782 * 22 3 2
44 44 H 1.09007 * 109.46965 * 89.99697 * 25 24 2
45 45 H 1.08994 * 109.47376 * 209.99771 * 25 24 2
46 46 H 1.09002 * 109.47445 * 329.99908 * 25 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3048 1.0931 0.0000
4 6 1.8433 2.5276 0.0005
5 7 1.4649 2.9198 1.3647
6 6 1.0081 4.3154 1.4037
7 6 0.6231 4.6861 2.8373
8 1 -0.1155 3.9765 3.2102
9 8 1.7849 4.6452 3.6683
10 6 0.0309 6.0966 2.8578
11 7 -0.3382 6.4528 4.2344
12 6 -1.4355 5.6060 4.7210
13 6 -0.6877 7.8762 4.3342
14 6 -0.8204 8.2603 5.7854
15 1 -0.6615 7.5208 6.5564
16 6 -1.1457 9.5553 6.1288
17 7 -1.2610 9.8906 7.3952
18 14 -1.4212 10.8341 4.7952
19 1 -2.8539 10.8413 4.4047
20 1 -1.0414 12.1747 5.3088
21 1 -0.5873 10.5029 3.6119
22 6 3.6335 0.6560 -0.0065
23 7 3.6334 -0.6523 -0.0007
24 7 2.3026 -1.0900 -0.0005
25 6 1.8540 -2.4845 -0.0003
26 1 -0.3633 -0.0001 -1.0277
27 1 -0.3633 -0.8899 0.5138
28 1 -0.3633 0.8900 0.5137
29 1 0.9823 2.6326 -0.6597
30 1 2.6511 3.1693 -0.3511
31 1 2.2273 2.7703 2.0085
32 1 0.1413 4.4323 0.7534
33 1 1.8099 4.9698 1.0617
34 1 2.4857 5.2528 3.3948
35 1 -0.8554 6.1279 2.2240
36 1 0.7695 6.8063 2.4849
37 1 -2.3285 5.7895 4.1235
38 1 -1.1504 4.5574 4.6359
39 1 -1.6418 5.8429 5.7647
40 1 0.0951 8.4760 3.8698
41 1 -1.6337 8.0548 3.8231
42 1 -1.4903 10.8017 7.6368
43 1 4.5084 1.2892 -0.0122
44 1 1.7421 -2.8303 -1.0280
45 1 2.5901 -3.1030 0.5130
46 1 0.8957 -2.5579 0.5141
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000573199334.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:52:42
Heat of formation + Delta-G solvation = 5.946157 kcal
Electronic energy + Delta-G solvation = -23597.286224 eV
Core-core repulsion = 20136.631992 eV
Total energy + Delta-G solvation = -3460.654233 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.195 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.20941 -39.57387 -37.51079 -36.18058 -34.58099 -34.30462 -33.05869 -31.29098
-29.75729 -28.67822 -27.53508 -27.13568 -25.40521 -23.95436 -22.44814 -21.79493
-21.63666 -20.28340 -19.00912 -17.60152 -17.26402 -17.10974 -16.61933 -16.58069
-16.11473 -15.94009 -15.62513 -15.26201 -15.14853 -14.59235 -14.53579 -14.24411
-14.13295 -13.90219 -13.69569 -13.43685 -13.32427 -13.22977 -13.02827 -12.85681
-12.75233 -12.56635 -12.48425 -12.40228 -12.25012 -11.80261 -11.54710 -11.47230
-11.46126 -10.78158 -10.70442 -10.17250 -9.38050 -9.14237 -8.93665 -8.26588
-6.30218 0.94263 1.35195 1.37517 1.48366 1.67912 1.79205 2.35663
3.03753 3.08309 3.56031 3.66423 3.77286 3.85460 4.06777 4.18975
4.22623 4.32529 4.35808 4.38157 4.46192 4.50937 4.53614 4.62138
4.66514 4.68591 4.73562 4.78107 4.85189 4.88315 4.92759 5.04124
5.04990 5.15789 5.16904 5.30489 5.35051 5.55189 5.71944 6.00583
6.16032 6.19841 6.38881 6.51099 6.69713 6.76654 6.77177 7.02813
7.33259 8.90324
Molecular weight = 296.20amu
Principal moments of inertia in cm(-1)
A = 0.036428 B = 0.002322 C = 0.002300
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 768.461131 B =12056.022564 C =12169.120983
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.090 4.090
2 C 0.103 3.897
3 C -0.258 4.258
4 C 0.147 3.853
5 N -0.686 5.686
6 C 0.040 3.960
7 C 0.124 3.876
8 H 0.091 0.909
9 O -0.565 6.565
10 C 0.022 3.978
11 N -0.541 5.541
12 C 0.042 3.958
13 C 0.172 3.828
14 C -0.516 4.516
15 H 0.034 0.966
16 C 0.003 3.997
17 N -0.950 5.950
18 Si 0.952 3.048
19 H -0.268 1.268
20 H -0.282 1.282
21 H -0.246 1.246
22 C 0.046 3.954
23 N -0.341 5.341
24 N -0.383 5.383
25 C 0.091 3.909
26 H 0.092 0.908
27 H 0.082 0.918
28 H 0.090 0.910
29 H 0.081 0.919
30 H 0.041 0.959
31 H 0.343 0.657
32 H 0.089 0.911
33 H 0.043 0.957
34 H 0.379 0.621
35 H 0.044 0.956
36 H 0.077 0.923
37 H 0.020 0.980
38 H 0.075 0.925
39 H 0.042 0.958
40 H 0.031 0.969
41 H -0.014 1.014
42 H 0.266 0.734
43 H 0.195 0.805
44 H 0.087 0.913
45 H 0.088 0.912
46 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.280 -21.146 -22.389 31.092
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.026 4.026
3 C -0.270 4.270
4 C 0.018 3.982
5 N -0.318 5.318
6 C -0.090 4.090
7 C 0.065 3.935
8 H 0.109 0.891
9 O -0.371 6.371
10 C -0.107 4.107
11 N -0.264 5.264
12 C -0.106 4.106
13 C 0.045 3.955
14 C -0.554 4.554
15 H 0.052 0.948
16 C -0.194 4.194
17 N -0.591 5.591
18 Si 0.775 3.225
19 H -0.193 1.193
20 H -0.208 1.208
21 H -0.170 1.170
22 C -0.139 4.139
23 N -0.162 5.162
24 N -0.166 5.166
25 C -0.049 4.049
26 H 0.111 0.889
27 H 0.101 0.899
28 H 0.109 0.891
29 H 0.099 0.901
30 H 0.059 0.941
31 H 0.161 0.839
32 H 0.107 0.893
33 H 0.061 0.939
34 H 0.227 0.773
35 H 0.062 0.938
36 H 0.095 0.905
37 H 0.039 0.961
38 H 0.093 0.907
39 H 0.061 0.939
40 H 0.049 0.951
41 H 0.004 0.996
42 H 0.075 0.925
43 H 0.212 0.788
44 H 0.105 0.895
45 H 0.107 0.893
46 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 4.349 -23.030 -21.718 31.952
hybrid contribution -0.061 2.475 -0.635 2.556
sum 4.287 -20.554 -22.353 30.668
Atomic orbital electron populations
1.20559 0.85249 1.04915 1.04091 1.21370 0.95842 0.86682 0.98700
1.19890 0.92087 0.95978 1.19015 1.20042 0.99029 0.89299 0.89863
1.60433 1.42794 1.20648 1.07895 1.22505 1.00946 0.89168 0.96382
1.21842 0.87607 0.94269 0.89829 0.89088 1.86589 1.27878 1.65539
1.57059 1.22885 1.00288 0.98314 0.89226 1.61734 1.39554 1.04064
1.21080 1.22178 0.91500 0.97095 0.99810 1.19965 0.93870 0.86537
0.95162 1.21289 1.46250 0.95636 0.92273 0.94817 1.25924 0.94761
1.00835 0.97880 1.70066 1.50460 1.19958 1.18610 0.85651 0.79383
0.77790 0.79680 1.19303 1.20764 1.16968 1.24121 0.98654 0.92077
0.99080 1.77284 0.98236 1.13767 1.26900 1.48747 1.03468 1.07365
1.57029 1.22133 1.02044 0.76235 1.04497 0.88950 0.89901 0.89125
0.90111 0.94084 0.83873 0.89317 0.93865 0.77335 0.93783 0.90482
0.96121 0.90664 0.93932 0.95105 0.99626 0.92474 0.78849 0.89458
0.89324 0.87338
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.99 9.89 71.24 0.70 -0.29 16
2 C 0.10 1.79 6.93 41.41 0.29 2.07 16
3 C -0.26 -4.80 5.61 -20.14 -0.11 -4.91 16
4 C 0.15 2.33 5.68 85.55 0.49 2.81 16
5 N -0.69 -12.61 6.49 -517.95 -3.36 -15.97 16
6 C 0.04 0.72 5.36 86.30 0.46 1.19 16
7 C 0.12 3.10 3.08 30.59 0.09 3.20 16
8 H 0.09 2.51 6.47 -2.39 -0.02 2.49 16
9 O -0.56 -16.03 12.72 -148.98 -1.90 -17.93 16
10 C 0.02 0.65 4.62 86.30 0.40 1.04 16
11 N -0.54 -22.22 4.62 -927.03 -4.28 -26.50 16
12 C 0.04 1.66 9.16 127.69 1.17 2.83 16
13 C 0.17 8.22 3.79 85.56 0.32 8.55 16
14 C -0.52 -30.39 9.07 25.60 0.23 -30.15 16
15 H 0.03 2.24 7.35 -2.91 -0.02 2.22 16
16 C 0.00 0.17 5.47 84.65 0.46 0.63 16
17 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16
18 Si 0.95 43.99 27.47 68.60 1.88 45.88 16
19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
21 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16
22 C 0.05 0.93 11.96 85.24 1.02 1.95 16
23 N -0.34 -7.88 12.58 -57.02 -0.72 -8.60 16
24 N -0.38 -7.07 4.01 -356.03 -1.43 -8.50 16
25 C 0.09 0.88 11.27 127.77 1.44 2.32 16
26 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16
27 H 0.08 0.65 7.08 -2.39 -0.02 0.64 16
28 H 0.09 1.17 7.88 -2.39 -0.02 1.15 16
29 H 0.08 1.15 8.13 -2.38 -0.02 1.14 16
30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16
31 H 0.34 7.14 8.28 -89.70 -0.74 6.40 16
32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
33 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16
34 H 0.38 8.51 9.04 -74.06 -0.67 7.84 16
35 H 0.04 1.21 8.12 -2.39 -0.02 1.19 16
36 H 0.08 2.16 7.93 -2.39 -0.02 2.14 16
37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16
38 H 0.07 2.53 6.30 -2.39 -0.02 2.52 16
39 H 0.04 1.94 6.86 -2.39 -0.02 1.92 16
40 H 0.03 1.45 6.99 -2.38 -0.02 1.43 16
41 H -0.01 -0.65 7.55 -2.39 -0.02 -0.67 16
42 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16
43 H 0.19 2.92 8.06 -2.91 -0.02 2.90 16
44 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16
45 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16
46 H 0.11 0.54 7.05 -2.39 -0.02 0.52 16
Total: -1.00 -76.08 372.91 -3.02 -79.10
By element:
Atomic # 1 Polarization: 21.72 SS G_CDS: -0.49 Total: 21.23 kcal
Atomic # 6 Polarization: -15.74 SS G_CDS: 6.97 Total: -8.77 kcal
Atomic # 7 Polarization: -110.02 SS G_CDS: -9.49 Total: -119.51 kcal
Atomic # 8 Polarization: -16.03 SS G_CDS: -1.90 Total: -17.93 kcal
Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal
Total: -76.08 -3.02 -79.10 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000573199334.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.047 kcal
(2) G-P(sol) polarization free energy of solvation -76.077 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.970 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.100 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.946 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds