Wall clock time and date at job start Tue Mar 31 2020 03:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39865 * 125.90273 * 2 1 4 4 C 1.35311 * 107.92479 * 180.14143 * 3 2 1 5 5 C 1.50702 * 126.13099 * 179.90701 * 4 3 2 6 6 N 1.46893 * 109.47178 * 94.68925 * 5 4 3 7 7 C 1.46901 * 111.00024 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47409 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47406 * 59.99712 * 8 7 6 10 10 O 1.42905 * 109.46872 * 299.99796 * 8 7 6 11 11 C 1.52998 * 109.47318 * 179.97438 * 8 7 6 12 12 N 1.46906 * 109.47197 * 182.15693 * 11 8 7 13 13 C 1.46901 * 110.99925 * 199.76710 * 12 11 8 14 14 C 1.46892 * 110.99774 * 75.81142 * 12 11 8 15 15 C 1.50701 * 109.46993 * 189.99771 * 14 12 11 16 16 H 1.07994 * 120.00328 * 0.02562 * 15 14 12 17 17 C 1.37887 * 119.99865 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99657 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99919 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47180 * 90.00017 * 19 17 15 21 21 H 1.48506 * 109.46895 * 209.99361 * 19 17 15 22 22 H 1.48496 * 109.47288 * 329.99433 * 19 17 15 23 23 N 1.34950 * 107.74517 * 359.64162 * 4 3 2 24 24 C 1.46505 * 126.03924 * 180.20505 * 23 4 3 25 25 N 1.30844 * 125.89577 * 179.74071 * 2 1 3 26 26 H 1.08996 * 109.46644 * 270.23361 * 1 2 3 27 27 H 1.08994 * 109.46557 * 30.23448 * 1 2 3 28 28 H 1.08996 * 109.46963 * 150.23286 * 1 2 3 29 29 H 1.08004 * 126.03786 * 0.02562 * 3 2 1 30 30 H 1.09006 * 109.46941 * 334.68628 * 5 4 3 31 31 H 1.08997 * 109.47222 * 214.69239 * 5 4 3 32 32 H 1.00899 * 111.00258 * 56.05122 * 6 5 4 33 33 H 1.08995 * 109.47180 * 59.99940 * 7 6 5 34 34 H 1.09002 * 109.47373 * 300.00035 * 7 6 5 35 35 H 0.96701 * 114.00201 * 299.99769 * 10 8 7 36 36 H 1.09000 * 109.47245 * 62.15773 * 11 8 7 37 37 H 1.09002 * 109.47237 * 302.15962 * 11 8 7 38 38 H 1.08999 * 109.47031 * 291.01429 * 13 12 11 39 39 H 1.09002 * 109.47006 * 51.00954 * 13 12 11 40 40 H 1.08993 * 109.46940 * 171.01218 * 13 12 11 41 41 H 1.08994 * 109.47530 * 310.00139 * 14 12 11 42 42 H 1.09002 * 109.46948 * 70.00276 * 14 12 11 43 43 H 0.96992 * 119.99710 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.46857 * 90.00310 * 24 23 4 45 45 H 1.08999 * 109.47000 * 210.00334 * 24 23 4 46 46 H 1.09004 * 109.46997 * 330.00067 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1329 0.0000 4 6 3.6142 0.7153 -0.0032 5 6 4.8351 1.5988 -0.0063 6 7 5.3016 1.7942 1.3728 7 6 6.4929 2.6531 1.4088 8 6 6.9486 2.8326 2.8583 9 1 7.1890 1.8596 3.2868 10 8 5.9001 3.4406 3.6154 11 6 8.1897 3.7265 2.8958 12 7 8.6576 3.8569 4.2822 13 6 9.5202 5.0358 4.4380 14 6 9.3485 2.6373 4.7215 15 6 9.5955 2.7071 6.2065 16 1 9.2713 3.5708 6.7678 17 6 10.2344 1.6676 6.8486 18 7 10.4504 1.7288 8.1445 19 14 10.7945 0.1733 5.8778 20 1 12.1788 0.3924 5.3867 21 1 10.7641 -1.0258 6.7535 22 1 9.8861 -0.0349 4.7217 23 7 3.6088 -0.6342 0.0029 24 6 4.7899 -1.5009 0.0064 25 7 2.2742 -1.0599 0.0048 26 1 -0.3632 0.0042 1.0276 27 1 -0.3632 0.8878 -0.5175 28 1 -0.3633 -0.8920 -0.5102 29 1 1.9924 2.1598 0.0004 30 1 4.5837 2.5644 -0.4452 31 1 5.6234 1.1272 -0.5931 32 1 5.4799 0.9091 1.8231 33 1 6.2526 3.6259 0.9800 34 1 7.2929 2.1892 0.8317 35 1 5.6340 4.3114 3.2900 36 1 7.9398 4.7119 2.5025 37 1 8.9767 3.2813 2.2870 38 1 10.4594 4.8711 3.9099 39 1 9.0188 5.9103 4.0233 40 1 9.7224 5.2006 5.4962 41 1 8.7302 1.7684 4.4964 42 1 10.3009 2.5508 4.1984 43 1 10.9002 0.9977 8.5962 44 1 5.0832 -1.7112 1.0349 45 1 4.5562 -2.4357 -0.5032 46 1 5.6092 -1.0006 -0.5100 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573318249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:52 Heat of formation + Delta-G solvation = 37.272702 kcal Electronic energy + Delta-G solvation = -23824.206225 eV Core-core repulsion = 20364.910413 eV Total energy + Delta-G solvation = -3459.295812 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44580 -38.33855 -36.32713 -35.16978 -33.97777 -32.44577 -31.39389 -29.88134 -29.33256 -28.00502 -26.54848 -25.58241 -24.45892 -22.99382 -21.66890 -20.60149 -20.02556 -19.47720 -17.03029 -16.88599 -16.46798 -16.02633 -15.59308 -15.25194 -14.83027 -14.67603 -14.41884 -14.22933 -13.76223 -13.74360 -13.66523 -13.25400 -13.06000 -12.84718 -12.74544 -12.52003 -12.35381 -12.26832 -12.07026 -11.88443 -11.56283 -11.35672 -11.13185 -10.76754 -10.69113 -10.68108 -10.13161 -9.87268 -9.62911 -9.31488 -9.20832 -8.72120 -8.58113 -8.56677 -7.37123 -6.04900 -4.01538 1.63571 2.29563 2.60967 3.24828 3.32112 3.33288 3.87900 4.26287 4.32577 4.40261 4.57466 4.71515 4.78395 4.81484 4.88767 5.06853 5.10360 5.13423 5.21114 5.24066 5.29663 5.42000 5.45134 5.50377 5.53508 5.57161 5.66461 5.71595 5.87243 5.99659 6.04075 6.22437 6.30835 6.53503 6.60679 6.67133 6.79289 6.84245 6.94454 7.04856 7.57536 7.59023 7.86213 8.01713 8.16819 8.66240 9.05033 9.56535 11.08584 Molecular weight = 296.20amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.003024 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.595839 B = 9257.937725 C =10032.508686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.068 3.932 3 C -0.250 4.250 4 C 0.089 3.911 5 C 0.123 3.877 6 N -0.670 5.670 7 C 0.027 3.973 8 C 0.118 3.882 9 H 0.096 0.904 10 O -0.528 6.528 11 C 0.023 3.977 12 N -0.521 5.521 13 C 0.040 3.960 14 C 0.162 3.838 15 C -0.506 4.506 16 H 0.081 0.919 17 C 0.067 3.933 18 N -0.900 5.900 19 Si 0.875 3.125 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.269 1.269 23 N -0.372 5.372 24 C 0.098 3.902 25 N -0.297 5.297 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.147 0.853 30 H 0.098 0.902 31 H 0.039 0.961 32 H 0.343 0.657 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.363 0.637 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.011 0.989 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.027 0.973 42 H -0.019 1.019 43 H 0.263 0.737 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.903 -0.622 -21.580 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.097 4.097 3 C -0.279 4.279 4 C -0.038 4.038 5 C -0.008 4.008 6 N -0.302 5.302 7 C -0.103 4.103 8 C 0.057 3.943 9 H 0.114 0.886 10 O -0.331 6.331 11 C -0.107 4.107 12 N -0.244 5.244 13 C -0.108 4.108 14 C 0.036 3.964 15 C -0.544 4.544 16 H 0.099 0.901 17 C -0.134 4.134 18 N -0.539 5.539 19 Si 0.703 3.297 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.194 1.194 23 N -0.155 5.155 24 C -0.044 4.044 25 N -0.120 5.120 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.165 0.835 30 H 0.117 0.883 31 H 0.057 0.943 32 H 0.162 0.838 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.208 0.792 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.030 0.970 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.045 0.955 42 H -0.001 1.001 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.429 -2.069 -20.643 24.714 hybrid contribution 1.988 -0.324 -1.620 2.585 sum -11.441 -2.394 -22.264 25.146 Atomic orbital electron populations 1.20161 0.86701 1.03061 1.03037 1.22325 0.96943 0.90827 0.99629 1.21097 0.90755 0.99774 1.16317 1.20899 0.97050 0.84108 1.01783 1.20501 0.91303 0.98034 0.90955 1.60339 1.34925 1.20176 1.14719 1.22774 0.90615 0.98021 0.98864 1.21836 0.86554 0.97482 0.88405 0.88627 1.86705 1.54094 1.35761 1.56497 1.22747 0.96739 0.99267 0.91928 1.61850 1.40543 1.04860 1.17180 1.22234 0.93804 0.91890 1.02904 1.20235 0.90943 0.87947 0.97251 1.21027 1.36782 1.05921 0.90651 0.90070 1.24909 0.95735 0.98007 0.94773 1.69890 1.42879 1.32796 1.08349 0.86867 0.79234 0.83294 0.80319 1.20439 1.21083 1.19441 1.48378 1.05499 1.04215 1.57423 1.21862 0.83870 0.94986 1.03682 1.77303 0.86180 1.22742 1.25785 0.90466 0.90459 0.91144 0.83512 0.88346 0.94326 0.83835 0.90394 0.94535 0.79156 0.91576 0.95200 0.97001 0.93539 0.90327 0.95531 1.00148 0.92680 0.90446 0.89193 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.45 36.01 0.38 -0.19 16 2 C 0.07 0.80 7.22 -82.40 -0.59 0.21 16 3 C -0.25 -2.82 10.65 -40.02 -0.43 -3.24 16 4 C 0.09 0.98 6.44 -82.26 -0.53 0.45 16 5 C 0.12 1.11 5.86 -4.98 -0.03 1.08 16 6 N -0.67 -7.37 6.36 -115.06 -0.73 -8.10 16 7 C 0.03 0.29 5.35 -3.82 -0.02 0.27 16 8 C 0.12 1.74 3.25 -26.73 -0.09 1.65 16 9 H 0.10 1.66 6.73 -51.93 -0.35 1.31 16 10 O -0.53 -8.63 13.11 -35.23 -0.46 -9.09 16 11 C 0.02 0.36 4.65 -3.82 -0.02 0.34 16 12 N -0.52 -10.72 4.59 -244.38 -1.12 -11.84 16 13 C 0.04 0.75 9.31 60.07 0.56 1.31 16 14 C 0.16 3.93 3.62 -4.98 -0.02 3.91 16 15 C -0.51 -14.51 9.13 -34.44 -0.31 -14.82 16 16 H 0.08 2.55 7.34 -52.49 -0.39 2.16 16 17 C 0.07 1.96 5.47 -17.81 -0.10 1.86 16 18 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 19 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 23 N -0.37 -4.30 4.01 -63.88 -0.26 -4.56 16 24 C 0.10 0.78 11.27 59.85 0.67 1.46 16 25 N -0.30 -3.94 12.58 33.67 0.42 -3.52 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.30 7.24 -51.93 -0.38 -0.08 16 32 H 0.34 4.04 8.72 -39.29 -0.34 3.70 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.36 4.54 9.05 45.56 0.41 4.96 16 36 H 0.07 0.87 7.75 -51.93 -0.40 0.46 16 37 H 0.03 0.46 8.00 -51.93 -0.42 0.04 16 38 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 39 H 0.05 0.72 7.85 -51.93 -0.41 0.31 16 40 H 0.08 1.65 7.01 -51.93 -0.36 1.28 16 41 H 0.03 0.65 5.66 -51.93 -0.29 0.36 16 42 H -0.02 -0.46 7.50 -51.93 -0.39 -0.85 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.50 7.15 -51.93 -0.37 0.13 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -35.06 375.07 -7.99 -43.05 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.08 Total: 4.33 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.53 Total: -5.72 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.91 Total: -55.06 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.46 Total: -9.09 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.06 -7.99 -43.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573318249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.326 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds