Wall clock time and date at job start Tue Mar 31 2020 03:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39865 * 125.90273 * 2 1 4 4 C 1.35311 * 107.92479 * 180.14143 * 3 2 1 5 5 C 1.50702 * 126.13099 * 179.90701 * 4 3 2 6 6 N 1.46893 * 109.47178 * 94.68925 * 5 4 3 7 7 C 1.46901 * 111.00024 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47409 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47406 * 59.99712 * 8 7 6 10 10 O 1.42905 * 109.46872 * 299.99796 * 8 7 6 11 11 C 1.52998 * 109.47318 * 179.97438 * 8 7 6 12 12 N 1.46906 * 109.47197 * 182.15693 * 11 8 7 13 13 C 1.46901 * 110.99925 * 199.76710 * 12 11 8 14 14 C 1.46892 * 110.99774 * 75.81142 * 12 11 8 15 15 C 1.50701 * 109.46993 * 189.99771 * 14 12 11 16 16 H 1.07994 * 120.00328 * 0.02562 * 15 14 12 17 17 C 1.37887 * 119.99865 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99657 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99919 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47180 * 90.00017 * 19 17 15 21 21 H 1.48506 * 109.46895 * 209.99361 * 19 17 15 22 22 H 1.48496 * 109.47288 * 329.99433 * 19 17 15 23 23 N 1.34950 * 107.74517 * 359.64162 * 4 3 2 24 24 C 1.46505 * 126.03924 * 180.20505 * 23 4 3 25 25 N 1.30844 * 125.89577 * 179.74071 * 2 1 3 26 26 H 1.08996 * 109.46644 * 270.23361 * 1 2 3 27 27 H 1.08994 * 109.46557 * 30.23448 * 1 2 3 28 28 H 1.08996 * 109.46963 * 150.23286 * 1 2 3 29 29 H 1.08004 * 126.03786 * 0.02562 * 3 2 1 30 30 H 1.09006 * 109.46941 * 334.68628 * 5 4 3 31 31 H 1.08997 * 109.47222 * 214.69239 * 5 4 3 32 32 H 1.00899 * 111.00258 * 56.05122 * 6 5 4 33 33 H 1.08995 * 109.47180 * 59.99940 * 7 6 5 34 34 H 1.09002 * 109.47373 * 300.00035 * 7 6 5 35 35 H 0.96701 * 114.00201 * 299.99769 * 10 8 7 36 36 H 1.09000 * 109.47245 * 62.15773 * 11 8 7 37 37 H 1.09002 * 109.47237 * 302.15962 * 11 8 7 38 38 H 1.08999 * 109.47031 * 291.01429 * 13 12 11 39 39 H 1.09002 * 109.47006 * 51.00954 * 13 12 11 40 40 H 1.08993 * 109.46940 * 171.01218 * 13 12 11 41 41 H 1.08994 * 109.47530 * 310.00139 * 14 12 11 42 42 H 1.09002 * 109.46948 * 70.00276 * 14 12 11 43 43 H 0.96992 * 119.99710 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.46857 * 90.00310 * 24 23 4 45 45 H 1.08999 * 109.47000 * 210.00334 * 24 23 4 46 46 H 1.09004 * 109.46997 * 330.00067 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1329 0.0000 4 6 3.6142 0.7153 -0.0032 5 6 4.8351 1.5988 -0.0063 6 7 5.3016 1.7942 1.3728 7 6 6.4929 2.6531 1.4088 8 6 6.9486 2.8326 2.8583 9 1 7.1890 1.8596 3.2868 10 8 5.9001 3.4406 3.6154 11 6 8.1897 3.7265 2.8958 12 7 8.6576 3.8569 4.2822 13 6 9.5202 5.0358 4.4380 14 6 9.3485 2.6373 4.7215 15 6 9.5955 2.7071 6.2065 16 1 9.2713 3.5708 6.7678 17 6 10.2344 1.6676 6.8486 18 7 10.4504 1.7288 8.1445 19 14 10.7945 0.1733 5.8778 20 1 12.1788 0.3924 5.3867 21 1 10.7641 -1.0258 6.7535 22 1 9.8861 -0.0349 4.7217 23 7 3.6088 -0.6342 0.0029 24 6 4.7899 -1.5009 0.0064 25 7 2.2742 -1.0599 0.0048 26 1 -0.3632 0.0042 1.0276 27 1 -0.3632 0.8878 -0.5175 28 1 -0.3633 -0.8920 -0.5102 29 1 1.9924 2.1598 0.0004 30 1 4.5837 2.5644 -0.4452 31 1 5.6234 1.1272 -0.5931 32 1 5.4799 0.9091 1.8231 33 1 6.2526 3.6259 0.9800 34 1 7.2929 2.1892 0.8317 35 1 5.6340 4.3114 3.2900 36 1 7.9398 4.7119 2.5025 37 1 8.9767 3.2813 2.2870 38 1 10.4594 4.8711 3.9099 39 1 9.0188 5.9103 4.0233 40 1 9.7224 5.2006 5.4962 41 1 8.7302 1.7684 4.4964 42 1 10.3009 2.5508 4.1984 43 1 10.9002 0.9977 8.5962 44 1 5.0832 -1.7112 1.0349 45 1 4.5562 -2.4357 -0.5032 46 1 5.6092 -1.0006 -0.5100 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573318249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:52 Heat of formation + Delta-G solvation = 7.379518 kcal Electronic energy + Delta-G solvation = -23825.502491 eV Core-core repulsion = 20364.910413 eV Total energy + Delta-G solvation = -3460.592078 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.23129 -39.54125 -37.56343 -36.29286 -34.72922 -34.59215 -32.28975 -30.84917 -30.28421 -29.80229 -27.59380 -26.30240 -25.74074 -24.40308 -22.80832 -21.66247 -21.36153 -20.25308 -19.05429 -17.83728 -17.39728 -16.99868 -16.72499 -16.46444 -16.27033 -15.83740 -15.65887 -15.23003 -15.05766 -14.72847 -14.46964 -14.39795 -14.37751 -14.14159 -13.70173 -13.46507 -13.26813 -13.17779 -13.10655 -12.92400 -12.85927 -12.62829 -12.60924 -12.46383 -12.14862 -11.82718 -11.65023 -11.48980 -11.42815 -10.79784 -10.70221 -10.12604 -9.49816 -9.35303 -8.93884 -8.28916 -6.31885 0.82975 1.30420 1.33689 1.43828 1.59840 1.79989 2.32688 2.94742 3.04542 3.40786 3.57997 3.61967 3.81032 3.93790 4.03700 4.16950 4.22978 4.29731 4.35725 4.45128 4.47792 4.51870 4.55258 4.61680 4.64239 4.71498 4.77039 4.78385 4.83538 4.90319 4.95825 5.00241 5.08585 5.18966 5.22222 5.30087 5.55369 5.77929 5.88241 5.99780 6.11540 6.20474 6.39649 6.67941 6.74954 6.76457 7.17405 7.31263 8.88264 Molecular weight = 296.20amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.003024 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.595839 B = 9257.937725 C =10032.508686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.056 3.944 3 C -0.268 4.268 4 C 0.085 3.915 5 C 0.129 3.871 6 N -0.684 5.684 7 C 0.042 3.958 8 C 0.120 3.880 9 H 0.063 0.937 10 O -0.556 6.556 11 C 0.024 3.976 12 N -0.544 5.544 13 C 0.043 3.957 14 C 0.174 3.826 15 C -0.515 4.515 16 H 0.034 0.966 17 C 0.003 3.997 18 N -0.950 5.950 19 Si 0.949 3.051 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.248 1.248 23 N -0.380 5.380 24 C 0.090 3.910 25 N -0.337 5.337 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.160 0.840 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.336 0.664 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.379 0.621 36 H 0.099 0.901 37 H 0.042 0.958 38 H 0.018 0.982 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.026 0.974 42 H -0.014 1.014 43 H 0.266 0.734 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.834 -0.535 -24.825 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.109 4.109 3 C -0.298 4.298 4 C -0.043 4.043 5 C -0.001 4.001 6 N -0.315 5.315 7 C -0.087 4.087 8 C 0.060 3.940 9 H 0.081 0.919 10 O -0.362 6.362 11 C -0.105 4.105 12 N -0.268 5.268 13 C -0.105 4.105 14 C 0.047 3.953 15 C -0.554 4.554 16 H 0.052 0.948 17 C -0.194 4.194 18 N -0.591 5.591 19 Si 0.772 3.228 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.172 1.172 23 N -0.163 5.163 24 C -0.050 4.050 25 N -0.161 5.161 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.178 0.822 30 H 0.132 0.868 31 H 0.076 0.924 32 H 0.153 0.847 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.227 0.773 36 H 0.117 0.883 37 H 0.060 0.940 38 H 0.036 0.964 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.003 0.997 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.373 -1.957 -23.923 27.476 hybrid contribution 1.910 -0.236 -0.549 2.002 sum -11.463 -2.194 -24.472 27.113 Atomic orbital electron populations 1.20271 0.84742 1.04189 1.03609 1.22909 0.98450 0.90718 0.98837 1.21424 0.91112 1.00415 1.16872 1.21293 0.97837 0.84235 1.00979 1.20552 0.90852 0.98553 0.90107 1.60316 1.35238 1.19954 1.15988 1.22585 0.90967 0.99295 0.95881 1.21758 0.86091 0.95590 0.90585 0.91932 1.86658 1.54607 1.37078 1.57820 1.22869 0.97080 1.01535 0.88968 1.61700 1.40370 1.03715 1.21021 1.22188 0.94567 0.92765 1.00948 1.19945 0.91380 0.89887 0.94074 1.21304 1.36391 1.04443 0.93216 0.94769 1.25914 0.95835 1.01794 0.95836 1.70062 1.44280 1.34232 1.10546 0.85694 0.79512 0.78395 0.79210 1.19010 1.20796 1.17160 1.48665 1.05626 1.04878 1.57135 1.22099 0.83546 0.95300 1.04100 1.77236 0.87368 1.24064 1.27464 0.90064 0.88449 0.90898 0.82200 0.86833 0.92432 0.84684 0.88126 0.92913 0.77343 0.88277 0.93988 0.96352 0.89752 0.94039 0.95622 0.99661 0.92493 0.90514 0.88669 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.45 71.24 0.74 -0.30 16 2 C 0.06 1.27 7.22 43.10 0.31 1.58 16 3 C -0.27 -5.71 10.65 21.99 0.23 -5.47 16 4 C 0.08 1.72 6.44 41.40 0.27 1.99 16 5 C 0.13 1.93 5.86 85.56 0.50 2.43 16 6 N -0.68 -13.18 6.36 -517.94 -3.29 -16.48 16 7 C 0.04 0.74 5.35 86.30 0.46 1.20 16 8 C 0.12 3.26 3.25 30.59 0.10 3.36 16 9 H 0.06 2.11 6.73 -2.39 -0.02 2.09 16 10 O -0.56 -17.32 13.11 -148.98 -1.95 -19.27 16 11 C 0.02 0.68 4.65 86.30 0.40 1.08 16 12 N -0.54 -21.77 4.59 -927.07 -4.25 -26.03 16 13 C 0.04 1.59 9.31 127.69 1.19 2.77 16 14 C 0.17 8.33 3.62 85.56 0.31 8.64 16 15 C -0.52 -30.45 9.13 25.60 0.23 -30.22 16 16 H 0.03 2.27 7.34 -2.91 -0.02 2.25 16 17 C 0.00 0.18 5.47 84.66 0.46 0.64 16 18 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 19 Si 0.95 44.22 27.47 68.60 1.88 46.10 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 23 N -0.38 -8.38 4.01 -356.02 -1.43 -9.81 16 24 C 0.09 1.32 11.27 127.77 1.44 2.76 16 25 N -0.34 -8.87 12.58 -47.38 -0.60 -9.46 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.11 1.36 8.14 -2.38 -0.02 1.35 16 31 H 0.06 0.66 7.24 -2.39 -0.02 0.64 16 32 H 0.34 7.31 8.72 -89.70 -0.78 6.53 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.38 8.60 9.05 -74.06 -0.67 7.93 16 36 H 0.10 2.13 7.75 -2.39 -0.02 2.11 16 37 H 0.04 1.11 8.00 -2.39 -0.02 1.09 16 38 H 0.02 0.63 8.08 -2.39 -0.02 0.61 16 39 H 0.08 2.39 7.85 -2.39 -0.02 2.38 16 40 H 0.04 1.79 7.01 -2.39 -0.02 1.77 16 41 H 0.03 1.24 5.66 -2.39 -0.01 1.22 16 42 H -0.01 -0.66 7.50 -2.39 -0.02 -0.68 16 43 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.11 1.01 7.15 -2.39 -0.02 0.99 16 Total: -1.00 -79.22 375.07 -3.22 -82.43 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -0.53 Total: 22.37 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 6.66 Total: -9.55 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -9.27 Total: -122.09 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -1.95 Total: -19.27 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.10 kcal Total: -79.22 -3.22 -82.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573318249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.814 kcal (2) G-P(sol) polarization free energy of solvation -79.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds