Wall clock time and date at job start Tue Mar 31 2020 03:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47197 * 2 1 4 4 C 1.34943 * 126.04028 * 124.97710 * 3 2 1 5 5 C 1.35319 * 107.75033 * 179.74838 * 4 3 2 6 6 C 1.39869 * 107.91670 * 0.39447 * 5 4 3 7 7 C 1.50700 * 125.89856 * 179.86417 * 6 5 4 8 8 N 1.46896 * 109.47209 * 94.71370 * 7 6 5 9 9 C 1.46895 * 111.00108 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47221 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47002 * 304.99874 * 10 9 8 12 12 O 1.42895 * 109.47000 * 64.99905 * 10 9 8 13 13 C 1.52997 * 109.47127 * 185.00300 * 10 9 8 14 14 N 1.46896 * 109.47114 * 179.97438 * 13 10 9 15 15 C 1.46896 * 111.00256 * 293.95380 * 14 13 10 16 16 C 1.46909 * 111.00113 * 169.99735 * 14 13 10 17 17 C 1.50695 * 109.47163 * 190.00161 * 16 14 13 18 18 H 1.08001 * 119.99957 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99878 * 180.02562 * 17 16 14 20 20 N 1.31508 * 119.99861 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47068 * 60.00137 * 21 19 17 23 23 H 1.48499 * 109.47135 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47326 * 300.00030 * 21 19 17 25 25 N 1.30845 * 108.20212 * 359.59960 * 6 5 4 26 26 H 1.09006 * 109.47498 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47396 * 300.00245 * 1 2 3 28 28 H 1.08995 * 109.47528 * 60.00304 * 1 2 3 29 29 H 1.08999 * 109.47396 * 239.99755 * 2 1 3 30 30 H 1.09002 * 109.46930 * 119.99979 * 2 1 3 31 31 H 1.08010 * 126.12626 * 359.97438 * 4 3 2 32 32 H 1.07992 * 126.04453 * 180.26962 * 5 4 3 33 33 H 1.09001 * 109.47187 * 334.70919 * 7 6 5 34 34 H 1.09003 * 109.47043 * 214.71180 * 7 6 5 35 35 H 1.00910 * 111.00029 * 56.04403 * 8 7 6 36 36 H 1.08997 * 109.47158 * 59.99752 * 9 8 7 37 37 H 1.09004 * 109.47713 * 299.99926 * 9 8 7 38 38 H 0.96696 * 113.99976 * 60.00990 * 12 10 9 39 39 H 1.09001 * 109.47289 * 299.99953 * 13 10 9 40 40 H 1.09004 * 109.47261 * 59.99697 * 13 10 9 41 41 H 1.08999 * 109.47174 * 60.00032 * 15 14 13 42 42 H 1.08998 * 109.47389 * 179.97438 * 15 14 13 43 43 H 1.09008 * 109.47155 * 299.99883 * 15 14 13 44 44 H 1.08999 * 109.46856 * 310.00530 * 16 14 13 45 45 H 1.09001 * 109.46406 * 70.00169 * 16 14 13 46 46 H 0.97000 * 119.99813 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8726 1.9212 0.8941 5 6 3.0758 3.2121 0.5429 6 6 2.3125 3.4724 -0.6000 7 6 2.2361 4.7881 -1.3308 8 7 3.2005 4.7895 -2.4388 9 6 3.1536 6.0593 -3.1759 10 6 4.1691 6.0228 -4.3199 11 1 5.1562 5.7874 -3.9221 12 8 3.7856 5.0224 -5.2654 13 6 4.2095 7.3878 -5.0097 14 7 5.1848 7.3529 -6.1076 15 6 6.5501 7.1805 -5.5937 16 6 5.0840 8.5593 -6.9399 17 6 5.9157 8.3821 -8.1840 18 1 6.4640 7.4650 -8.3410 19 6 5.9767 9.3909 -9.1219 20 7 5.3094 10.5079 -8.9305 21 14 7.0082 9.1716 -10.6638 22 1 6.5117 7.9998 -11.4291 23 1 6.9062 10.3910 -11.5052 24 1 8.4263 8.9494 -10.2832 25 7 1.6808 2.3746 -0.9282 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.3178 1.4130 1.7368 32 1 3.7129 3.9175 1.0556 33 1 2.4718 5.6001 -0.6428 34 1 1.2294 4.9267 -1.7252 35 1 3.0430 4.0072 -3.0564 36 1 3.3954 6.8803 -2.5010 37 1 2.1533 6.2064 -3.5832 38 1 2.9153 5.1681 -5.6610 39 1 3.2224 7.6233 -5.4075 40 1 4.5020 8.1509 -4.2884 41 1 6.6142 6.2442 -5.0394 42 1 7.2520 7.1576 -6.4273 43 1 6.7973 8.0115 -4.9329 44 1 4.0430 8.7222 -7.2189 45 1 5.4486 9.4195 -6.3785 46 1 5.3520 11.2174 -9.5905 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584048179.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:33 Heat of formation + Delta-G solvation = 4.107305 kcal Electronic energy + Delta-G solvation = -23196.659109 eV Core-core repulsion = 19735.925138 eV Total energy + Delta-G solvation = -3460.733971 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.195 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.07396 -39.60548 -37.55045 -36.40425 -35.00362 -34.61103 -31.96982 -30.95576 -30.22716 -29.06031 -27.91336 -26.48580 -24.72083 -23.63077 -22.65269 -22.00275 -21.77475 -20.50532 -18.56137 -18.08515 -17.35254 -17.21186 -16.72726 -16.40410 -16.22339 -15.85930 -15.71340 -15.18309 -15.15195 -15.11447 -14.78929 -14.29040 -14.00144 -13.77101 -13.58524 -13.29257 -13.15538 -13.14613 -12.90930 -12.82522 -12.67512 -12.54085 -12.50107 -12.36082 -12.24027 -11.99953 -11.60639 -11.47925 -11.40376 -10.75179 -10.60959 -10.26204 -9.47820 -9.37399 -8.94506 -8.20073 -6.29914 0.97859 1.41129 1.44644 1.52552 1.66068 1.81908 2.40789 3.03521 3.12213 3.47472 3.59799 3.72164 3.89992 4.01633 4.05256 4.11861 4.16533 4.27344 4.30725 4.37313 4.46503 4.56905 4.58298 4.70325 4.72945 4.74841 4.82353 4.82834 4.91293 4.99123 5.08093 5.15428 5.16497 5.18789 5.23516 5.33268 5.65169 5.71249 5.97642 6.06452 6.22439 6.32010 6.33921 6.64842 6.80544 6.85826 6.95931 7.39524 8.90588 Molecular weight = 296.20amu Principal moments of inertia in cm(-1) A = 0.037023 B = 0.002088 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.098717 B =13403.687268 C =13591.650551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.121 3.879 3 N -0.377 5.377 4 C 0.056 3.944 5 C -0.277 4.277 6 C 0.061 3.939 7 C 0.144 3.856 8 N -0.682 5.682 9 C 0.039 3.961 10 C 0.128 3.872 11 H 0.094 0.906 12 O -0.563 6.563 13 C 0.025 3.975 14 N -0.541 5.541 15 C 0.041 3.959 16 C 0.208 3.792 17 C -0.525 4.525 18 H 0.060 0.940 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.268 1.268 25 N -0.329 5.329 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.212 0.788 32 H 0.157 0.843 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.344 0.656 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.379 0.621 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.012 0.988 44 H 0.004 0.996 45 H -0.038 1.038 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.314 -19.391 23.484 31.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 N -0.160 5.160 4 C -0.090 4.090 5 C -0.307 4.307 6 C -0.105 4.105 7 C 0.014 3.986 8 N -0.314 5.314 9 C -0.091 4.091 10 C 0.068 3.932 11 H 0.112 0.888 12 O -0.368 6.368 13 C -0.104 4.104 14 N -0.265 5.265 15 C -0.107 4.107 16 C 0.081 3.919 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.198 4.198 20 N -0.574 5.574 21 Si 0.794 3.206 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.193 1.193 25 N -0.153 5.153 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.149 0.851 31 H 0.229 0.771 32 H 0.175 0.825 33 H 0.121 0.879 34 H 0.059 0.941 35 H 0.162 0.838 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.226 0.774 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.023 0.977 45 H -0.021 1.021 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.218 -20.391 22.857 31.714 hybrid contribution -0.259 1.681 -0.502 1.774 sum -8.477 -18.710 22.355 30.359 Atomic orbital electron populations 1.22002 0.93871 1.03877 1.01984 1.22026 0.96111 0.76193 1.05507 1.49015 1.35707 1.10625 1.20629 1.23172 0.94481 0.94695 0.96634 1.21655 1.09389 0.97894 1.01729 1.22361 0.96702 0.94765 0.96668 1.20229 0.94098 0.91524 0.92799 1.60392 1.52812 1.04879 1.13334 1.22545 0.97998 0.92812 0.95703 1.21791 0.98546 0.86068 0.86786 0.88779 1.86562 1.40829 1.49363 1.60068 1.22807 0.96959 0.97599 0.93046 1.61920 1.04909 1.39718 1.19917 1.22210 0.90394 0.99432 0.98674 1.19395 0.95426 0.85418 0.91621 1.21444 1.28714 1.01408 1.04720 0.92163 1.25922 0.97189 0.94723 1.01930 1.70072 1.43571 1.06672 1.37124 0.85429 0.79091 0.77556 0.78490 1.19442 1.20683 1.19277 1.77184 1.25414 0.97669 1.15076 0.88335 0.92670 0.93669 0.89770 0.85128 0.77146 0.82511 0.87864 0.94121 0.83817 0.88979 0.93839 0.77354 0.91291 0.94594 0.90758 0.92724 0.96939 0.97750 1.02052 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.10 71.98 0.73 -0.86 16 2 C 0.12 1.17 7.23 86.38 0.62 1.80 16 3 N -0.38 -6.61 3.68 -348.07 -1.28 -7.89 16 4 C 0.06 0.82 11.45 83.54 0.96 1.77 16 5 C -0.28 -5.18 10.74 21.99 0.24 -4.95 16 6 C 0.06 1.38 6.73 43.10 0.29 1.67 16 7 C 0.14 2.97 6.24 85.56 0.53 3.50 16 8 N -0.68 -15.88 6.49 -517.94 -3.36 -19.24 16 9 C 0.04 0.89 5.36 86.31 0.46 1.35 16 10 C 0.13 3.69 3.08 30.60 0.09 3.79 16 11 H 0.09 2.91 6.55 -2.39 -0.02 2.90 16 12 O -0.56 -17.61 12.72 -148.98 -1.90 -19.51 16 13 C 0.03 0.88 4.62 86.30 0.40 1.28 16 14 N -0.54 -24.17 4.62 -927.05 -4.28 -28.45 16 15 C 0.04 1.68 9.14 127.69 1.17 2.85 16 16 C 0.21 11.37 4.72 85.55 0.40 11.77 16 17 C -0.52 -30.67 8.46 25.60 0.22 -30.45 16 18 H 0.06 3.49 7.12 -2.91 -0.02 3.47 16 19 C 0.00 0.02 5.46 84.66 0.46 0.48 16 20 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 21 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 N -0.33 -8.01 12.42 -47.38 -0.59 -8.60 16 26 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.13 0.30 8.07 -2.39 -0.02 0.28 16 31 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 32 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.34 8.93 8.28 -89.69 -0.74 8.18 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.38 9.78 9.04 -74.06 -0.67 9.11 16 39 H 0.07 2.39 7.93 -2.39 -0.02 2.37 16 40 H 0.04 1.22 8.12 -2.38 -0.02 1.20 16 41 H 0.07 2.63 6.47 -2.39 -0.02 2.61 16 42 H 0.05 2.41 6.76 -2.39 -0.02 2.40 16 43 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.00 0.26 7.93 -2.39 -0.02 0.24 16 45 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 46 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -74.28 379.50 -2.97 -77.26 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.45 Total: 21.87 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 6.57 Total: -6.00 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -9.23 Total: -120.93 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.90 Total: -19.51 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -74.28 -2.97 -77.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584048179.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.363 kcal (2) G-P(sol) polarization free energy of solvation -74.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds