Wall clock time and date at job start Tue Mar 31 2020 03:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47340 * 2 1 4 4 N 1.46904 * 109.47162 * 119.99839 * 2 1 3 5 5 C 1.46896 * 111.00016 * 274.99941 * 4 2 1 6 6 C 1.53002 * 109.47181 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.47070 * 305.00230 * 6 5 4 8 8 O 1.42903 * 109.46923 * 65.00394 * 6 5 4 9 9 C 1.53000 * 109.47233 * 184.99855 * 6 5 4 10 10 N 1.46905 * 109.47123 * 180.02562 * 9 6 5 11 11 C 1.46898 * 110.99713 * 293.95674 * 10 9 6 12 12 C 1.46891 * 110.99898 * 170.00473 * 10 9 6 13 13 C 1.50706 * 109.47049 * 190.00167 * 12 10 9 14 14 H 1.07995 * 119.99965 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99874 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99772 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00103 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.47097 * 90.00210 * 17 15 13 19 19 H 1.48503 * 109.47186 * 209.99572 * 17 15 13 20 20 H 1.48499 * 109.47341 * 330.00010 * 17 15 13 21 21 C 1.50696 * 109.47548 * 240.00010 * 2 1 3 22 22 C 1.39873 * 126.03882 * 279.69600 * 21 2 1 23 23 N 1.30838 * 108.20206 * 179.81329 * 22 21 2 24 24 N 1.40083 * 108.20622 * 0.43503 * 23 22 21 25 25 C 1.46493 * 126.03896 * 179.73888 * 24 23 22 26 26 C 1.34950 * 107.92582 * 359.72254 * 24 23 22 27 27 H 1.08997 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46757 * 300.00342 * 1 2 3 29 29 H 1.08998 * 109.47082 * 59.99705 * 1 2 3 30 30 H 1.00896 * 110.99668 * 38.95399 * 4 2 1 31 31 H 1.09008 * 109.47165 * 59.99956 * 5 4 2 32 32 H 1.08997 * 109.47437 * 299.99850 * 5 4 2 33 33 H 0.96700 * 114.00234 * 59.99815 * 8 6 5 34 34 H 1.08992 * 109.47399 * 300.00166 * 9 6 5 35 35 H 1.09004 * 109.46724 * 60.00652 * 9 6 5 36 36 H 1.09002 * 109.47298 * 60.00428 * 11 10 9 37 37 H 1.09011 * 109.46893 * 179.97438 * 11 10 9 38 38 H 1.08994 * 109.47518 * 299.99556 * 11 10 9 39 39 H 1.09008 * 109.47131 * 309.99933 * 12 10 9 40 40 H 1.08997 * 109.47884 * 70.00206 * 12 10 9 41 41 H 0.96997 * 120.00316 * 179.97438 * 16 15 13 42 42 H 1.08001 * 125.89602 * 359.97438 * 22 21 2 43 43 H 1.08999 * 109.47506 * 269.97701 * 25 24 23 44 44 H 1.09001 * 109.47286 * 29.98188 * 25 24 23 45 45 H 1.09005 * 109.47156 * 149.97939 * 25 24 23 46 46 H 1.07994 * 126.13205 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5951 -0.5331 3.5745 7 1 1.9691 -1.4080 3.7501 8 8 3.9433 -0.9495 3.3489 9 6 2.5428 0.3851 4.7972 10 7 3.0356 -0.3404 5.9758 11 6 2.1337 -1.4447 6.3292 12 6 3.2242 0.5698 7.1133 13 6 3.9550 -0.1505 8.2171 14 1 4.2493 -1.1814 8.0868 15 6 4.2477 0.5066 9.3933 16 7 4.8849 -0.1221 10.3568 17 14 3.7392 2.2899 9.6184 18 1 2.3806 2.3456 10.2155 19 1 4.7041 2.9698 10.5195 20 1 3.7285 2.9719 8.2993 21 6 2.0324 -0.7104 -1.2304 22 6 2.1272 -2.0956 -1.3999 23 7 2.6023 -2.3294 -2.5963 24 7 2.8346 -1.0984 -3.2232 25 6 3.3708 -0.9062 -4.5729 26 6 2.4769 -0.1208 -2.3644 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.4496 -1.4979 1.4100 31 1 1.0870 0.6164 2.5525 32 1 2.7589 1.0462 2.1182 33 1 4.5578 -0.2210 3.1851 34 1 3.1687 1.2599 4.6217 35 1 1.5144 0.7027 4.9694 36 1 2.0667 -2.1409 5.4931 37 1 2.5223 -1.9652 7.2046 38 1 1.1433 -1.0480 6.5520 39 1 3.8078 1.4336 6.7945 40 1 2.2523 0.9024 7.4777 41 1 5.0912 0.3403 11.1841 42 1 1.8529 -2.8430 -0.6701 43 1 4.4580 -0.8441 -4.5266 44 1 3.0814 -1.7479 -5.2021 45 1 2.9719 0.0165 -4.9944 46 1 2.5346 0.9416 -2.5492 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590605183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:31 Heat of formation + Delta-G solvation = 11.913333 kcal Electronic energy + Delta-G solvation = -23651.708649 eV Core-core repulsion = 20191.313172 eV Total energy + Delta-G solvation = -3460.395477 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.05332 -39.57930 -37.82790 -36.61488 -34.57398 -33.95722 -32.50273 -30.86032 -29.90146 -29.02232 -27.46382 -27.04735 -24.92921 -23.44458 -22.60216 -21.75727 -21.69913 -20.69150 -19.00551 -17.90848 -17.25860 -16.89237 -16.63405 -16.27249 -15.96131 -15.81542 -15.73447 -15.43917 -15.11468 -14.82779 -14.48604 -14.36544 -13.91004 -13.87684 -13.63014 -13.43971 -13.35947 -13.21391 -12.99550 -12.67611 -12.56747 -12.48243 -12.40620 -12.28675 -12.21656 -11.80175 -11.55443 -11.47195 -11.34156 -10.78168 -10.61317 -10.28190 -9.30998 -9.07927 -8.92799 -8.26574 -6.30205 1.04286 1.34928 1.37444 1.48373 1.78475 1.93877 2.35682 2.99746 3.06768 3.47045 3.76305 3.83717 4.00694 4.08549 4.21765 4.27020 4.35630 4.40134 4.41786 4.46425 4.48610 4.53665 4.58464 4.66238 4.71764 4.73072 4.81075 4.85303 4.91822 4.92698 5.03596 5.11556 5.18066 5.23322 5.30523 5.36034 5.55228 5.78826 6.00587 6.17230 6.28834 6.39259 6.54733 6.70079 6.76731 6.83766 7.12044 7.33168 8.90372 Molecular weight = 296.20amu Principal moments of inertia in cm(-1) A = 0.033369 B = 0.002376 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.911563 B =11783.203175 C =11896.003909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.169 3.831 3 H 0.087 0.913 4 N -0.681 5.681 5 C 0.042 3.958 6 C 0.125 3.875 7 H 0.087 0.913 8 O -0.558 6.558 9 C 0.022 3.978 10 N -0.541 5.541 11 C 0.041 3.959 12 C 0.172 3.828 13 C -0.516 4.516 14 H 0.033 0.967 15 C 0.002 3.998 16 N -0.950 5.950 17 Si 0.952 3.048 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.246 1.246 21 C -0.230 4.230 22 C 0.056 3.944 23 N -0.346 5.346 24 N -0.385 5.385 25 C 0.094 3.906 26 C 0.057 3.943 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.342 0.658 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.377 0.623 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.022 0.978 39 H 0.031 0.969 40 H -0.014 1.014 41 H 0.266 0.734 42 H 0.181 0.819 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 5.865 -30.531 32.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.058 3.942 3 H 0.105 0.895 4 N -0.312 5.312 5 C -0.088 4.088 6 C 0.065 3.935 7 H 0.104 0.896 8 O -0.363 6.363 9 C -0.107 4.107 10 N -0.265 5.265 11 C -0.107 4.107 12 C 0.045 3.955 13 C -0.555 4.555 14 H 0.052 0.948 15 C -0.194 4.194 16 N -0.591 5.591 17 Si 0.775 3.225 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.169 1.169 21 C -0.242 4.242 22 C -0.130 4.130 23 N -0.168 5.168 24 N -0.167 5.167 25 C -0.046 4.046 26 C -0.091 4.091 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.160 0.840 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.225 0.775 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.049 0.951 40 H 0.004 0.996 41 H 0.075 0.925 42 H 0.198 0.802 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.134 0.866 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.939 4.297 -31.574 33.095 hybrid contribution -1.555 1.759 1.737 2.920 sum -10.494 6.055 -29.838 32.203 Atomic orbital electron populations 1.22418 0.96065 1.02133 1.02322 1.19648 0.92249 0.96324 0.86000 0.89489 1.60343 1.58073 1.09508 1.03237 1.22533 1.00585 0.95527 0.90151 1.21787 0.84332 0.96597 0.90775 0.89555 1.86580 1.18433 1.37596 1.93667 1.22905 0.98910 0.97271 0.91645 1.61722 1.47949 1.11536 1.05244 1.22190 0.93235 0.94524 1.00736 1.19955 0.94138 0.92495 0.88925 1.21295 1.36128 0.99021 0.99037 0.94824 1.25931 0.94866 1.03357 0.95286 1.70065 1.42826 1.39371 1.06827 0.85643 0.78363 0.79204 0.79248 1.19317 1.20744 1.16947 1.20111 1.13417 0.93034 0.97678 1.23824 0.98151 0.97090 0.93905 1.77288 1.24180 1.05301 1.10044 1.48755 1.49886 1.03397 1.14675 1.22132 1.00009 1.04954 0.77482 1.22778 0.99244 0.96578 0.90450 0.92793 0.92280 0.91595 0.83979 0.93228 0.90028 0.77545 0.90452 0.93934 0.90760 0.93841 0.96005 0.95107 0.99647 0.92472 0.80207 0.90155 0.89525 0.86576 0.77903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.14 71.98 0.66 -1.46 16 2 C 0.17 2.48 3.02 44.17 0.13 2.62 16 3 H 0.09 1.15 7.79 -2.38 -0.02 1.13 16 4 N -0.68 -12.28 5.93 -495.44 -2.94 -15.22 16 5 C 0.04 0.76 5.12 86.30 0.44 1.20 16 6 C 0.13 3.16 3.02 30.60 0.09 3.25 16 7 H 0.09 2.27 6.55 -2.39 -0.02 2.25 16 8 O -0.56 -17.01 13.15 -148.98 -1.96 -18.97 16 9 C 0.02 0.65 4.62 86.30 0.40 1.05 16 10 N -0.54 -22.37 4.62 -927.04 -4.28 -26.66 16 11 C 0.04 1.62 9.14 127.69 1.17 2.78 16 12 C 0.17 8.27 3.79 85.56 0.32 8.59 16 13 C -0.52 -30.54 9.01 25.60 0.23 -30.31 16 14 H 0.03 2.25 7.37 -2.91 -0.02 2.22 16 15 C 0.00 0.14 5.47 84.66 0.46 0.61 16 16 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 17 Si 0.95 44.13 27.47 68.60 1.88 46.01 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.25 -10.43 6.54 99.48 0.65 -9.78 16 21 C -0.23 -4.05 5.10 -20.14 -0.10 -4.15 16 22 C 0.06 1.19 11.66 85.24 0.99 2.19 16 23 N -0.35 -8.21 12.58 -57.02 -0.72 -8.93 16 24 N -0.38 -6.57 4.01 -369.57 -1.48 -8.05 16 25 C 0.09 0.76 11.47 127.77 1.47 2.22 16 26 C 0.06 0.82 11.40 83.54 0.95 1.77 16 27 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 28 H 0.06 0.70 7.45 -2.39 -0.02 0.68 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.34 6.05 8.47 -89.70 -0.76 5.29 16 31 H 0.05 0.78 7.44 -2.38 -0.02 0.76 16 32 H 0.08 1.39 8.05 -2.39 -0.02 1.37 16 33 H 0.38 9.60 9.05 -74.06 -0.67 8.93 16 34 H 0.08 2.20 7.93 -2.39 -0.02 2.18 16 35 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 36 H 0.07 2.51 6.47 -2.39 -0.02 2.49 16 37 H 0.04 1.99 6.76 -2.38 -0.02 1.97 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.03 1.45 6.99 -2.38 -0.02 1.44 16 40 H -0.01 -0.66 7.55 -2.39 -0.02 -0.68 16 41 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 42 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 43 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 46 H 0.20 1.31 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -77.73 373.68 -2.49 -80.22 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -0.51 Total: 21.38 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 7.22 Total: -9.65 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -9.12 Total: -118.99 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -1.96 Total: -18.97 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Total: -77.73 -2.49 -80.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590605183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.135 kcal (2) G-P(sol) polarization free energy of solvation -77.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds