Wall clock time and date at job start Tue Mar 31 2020 03:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99716 * 2 1 4 4 C 1.50697 * 120.00076 * 179.97438 * 2 1 3 5 5 N 1.46497 * 109.47271 * 94.99853 * 4 2 1 6 6 C 1.46494 * 120.00052 * 269.99936 * 5 4 2 7 7 C 1.52998 * 109.47381 * 269.99778 * 6 5 4 8 8 C 1.34774 * 119.99603 * 90.00109 * 5 4 2 9 9 O 1.21288 * 120.00438 * 0.02562 * 8 5 4 10 10 C 1.50700 * 119.99916 * 179.97438 * 8 5 4 11 11 N 1.46906 * 109.47059 * 180.02562 * 10 8 5 12 12 C 1.47436 * 110.99898 * 69.87536 * 11 10 8 13 13 C 1.54324 * 107.23089 * 123.25894 * 12 11 10 14 14 C 1.55140 * 103.01888 * 22.28261 * 13 12 11 15 15 O 1.42900 * 110.98963 * 82.47893 * 14 13 12 16 16 C 1.50700 * 110.98925 * 206.25481 * 14 13 12 17 17 H 1.08003 * 119.99796 * 118.54658 * 16 14 13 18 18 C 1.37874 * 120.00556 * 298.54821 * 16 14 13 19 19 N 1.31516 * 119.99369 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00588 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46930 * 59.99529 * 20 18 16 22 22 H 1.48501 * 109.46989 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46846 * 299.99905 * 20 18 16 24 24 C 1.47851 * 110.99786 * 190.72090 * 11 10 8 25 25 H 1.08005 * 120.00020 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99961 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46666 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46993 * 299.99307 * 3 2 1 29 29 H 1.08994 * 109.47247 * 59.99811 * 3 2 1 30 30 H 1.09004 * 109.47237 * 334.99836 * 4 2 1 31 31 H 1.08996 * 109.46857 * 215.00652 * 4 2 1 32 32 H 1.09000 * 109.47602 * 30.00404 * 6 5 4 33 33 H 1.08999 * 109.46820 * 150.00168 * 6 5 4 34 34 H 1.08999 * 109.47407 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.47263 * 300.00833 * 7 6 5 36 36 H 1.08999 * 109.46825 * 60.00393 * 7 6 5 37 37 H 1.09003 * 109.46865 * 60.00495 * 10 8 5 38 38 H 1.08999 * 109.47499 * 300.00425 * 10 8 5 39 39 H 1.08998 * 109.88931 * 242.66034 * 12 11 10 40 40 H 1.09003 * 109.89178 * 3.85625 * 12 11 10 41 41 H 1.08995 * 110.70829 * 140.66528 * 13 12 11 42 42 H 1.08998 * 110.70384 * 263.72400 * 13 12 11 43 43 H 0.96700 * 114.00026 * 61.45323 * 15 14 13 44 44 H 0.97003 * 119.99602 * 180.02562 * 19 18 16 45 45 H 1.08997 * 110.37354 * 332.46432 * 24 11 10 46 46 H 1.08994 * 110.37029 * 94.80655 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6684 -1.3752 6 6 1.4916 -2.4821 -2.1733 7 6 1.8149 -3.9639 -1.9717 8 6 3.5792 -1.2541 -1.9065 9 8 4.3413 -0.5809 -1.2455 10 6 3.9379 -1.6284 -3.3215 11 7 5.2495 -1.0603 -3.6607 12 6 6.3275 -1.7403 -2.9196 13 6 7.3239 -2.2886 -3.9627 14 6 7.0532 -1.4002 -5.2054 15 8 7.7530 -0.1580 -5.1087 16 6 7.4172 -2.1240 -6.4761 17 1 6.6591 -2.3265 -7.2182 18 6 8.7178 -2.5278 -6.6913 19 7 9.6409 -2.2807 -5.7878 20 14 9.1690 -3.4244 -8.2667 21 1 8.8644 -2.5582 -9.4338 22 1 10.6185 -3.7468 -8.2549 23 1 8.3828 -4.6804 -8.3639 24 6 5.5223 -1.1847 -5.1085 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 3.1351 1.1060 0.0005 28 1 1.8002 1.8767 -0.8901 29 1 1.8001 1.8767 0.8899 30 1 1.4386 -2.0853 0.4353 31 1 2.9741 -1.1985 0.5901 32 1 0.4668 -2.2875 -1.8571 33 1 1.6013 -2.2265 -3.2272 34 1 1.1299 -4.5693 -2.5652 35 1 2.8397 -4.1585 -2.2879 36 1 1.7052 -4.2195 -0.9178 37 1 3.1839 -1.2353 -4.0035 38 1 3.9783 -2.7139 -3.4112 39 1 6.8310 -1.0307 -2.2631 40 1 5.9141 -2.5616 -2.3342 41 1 8.3503 -2.1655 -3.6172 42 1 7.1154 -3.3359 -4.1815 43 1 8.7147 -0.2504 -5.0682 44 1 10.5561 -2.5645 -5.9393 45 1 4.9915 -2.0420 -5.5224 46 1 5.2340 -0.2714 -5.6288 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:51 Heat of formation + Delta-G solvation = -57.342743 kcal Electronic energy + Delta-G solvation = -25165.721115 eV Core-core repulsion = 21670.029719 eV Total energy + Delta-G solvation = -3495.691397 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.06542 -38.12303 -36.47790 -34.95948 -34.43823 -32.10246 -30.61990 -30.29238 -28.08156 -27.64510 -27.14348 -25.47972 -24.00949 -23.23331 -20.42610 -19.56264 -19.30913 -18.25917 -17.01963 -16.88141 -16.29289 -15.71147 -15.12206 -14.85706 -14.66513 -14.27282 -14.02152 -13.86322 -13.75567 -13.68123 -13.17608 -12.92350 -12.45326 -12.34763 -12.23667 -12.00664 -11.75142 -11.66268 -11.57608 -11.44633 -11.35680 -11.21592 -11.03974 -11.01423 -10.69771 -10.43753 -10.24571 -9.81615 -9.61531 -9.21752 -9.12381 -8.68562 -8.57365 -8.03218 -7.54523 -6.18457 -4.27235 1.91015 2.87411 3.13447 3.24107 3.29507 3.31931 4.29929 4.49085 4.69958 4.73195 4.73868 4.87326 5.04230 5.09825 5.18222 5.30201 5.45587 5.49246 5.49682 5.58096 5.60764 5.62189 5.70720 5.77864 5.80562 5.95996 6.00151 6.05184 6.14106 6.22343 6.41926 6.48491 6.56283 6.71626 6.72025 6.94573 7.13254 7.36482 7.44734 7.53252 7.67807 7.75418 7.85198 8.18881 8.43984 8.74625 9.41445 9.57194 10.88359 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027818 B = 0.003510 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.312787 B = 7975.135386 C = 8459.914225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 C -0.123 4.123 4 C 0.149 3.851 5 N -0.617 5.617 6 C 0.106 3.894 7 C -0.173 4.173 8 C 0.517 3.483 9 O -0.509 6.509 10 C 0.034 3.966 11 N -0.510 5.510 12 C 0.056 3.944 13 C -0.146 4.146 14 C 0.253 3.747 15 O -0.577 6.577 16 C -0.537 4.537 17 H 0.060 0.940 18 C 0.072 3.928 19 N -0.893 5.893 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.059 3.941 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.377 0.623 44 H 0.267 0.733 45 H 0.047 0.953 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.265 -1.773 9.638 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.131 4.131 3 C -0.180 4.180 4 C 0.027 3.973 5 N -0.353 5.353 6 C -0.018 4.018 7 C -0.231 4.231 8 C 0.305 3.695 9 O -0.382 6.382 10 C -0.098 4.098 11 N -0.234 5.234 12 C -0.071 4.071 13 C -0.185 4.185 14 C 0.213 3.787 15 O -0.385 6.385 16 C -0.576 4.576 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.532 5.532 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.068 4.068 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.226 0.774 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.243 -0.665 10.161 20.025 hybrid contribution 0.631 -1.788 -1.050 2.168 sum -16.612 -2.453 9.111 19.104 Atomic orbital electron populations 1.23654 0.95160 1.01632 1.02664 1.22220 0.95457 0.96679 0.98703 1.20894 1.01788 0.94053 1.01275 1.20425 0.99995 0.93187 0.83698 1.48074 1.19798 1.53561 1.13867 1.21536 0.93521 0.90457 0.96253 1.22233 1.02632 0.96014 1.02255 1.20816 0.80234 0.79192 0.89243 1.90672 1.49139 1.36620 1.61813 1.22196 0.95558 0.98535 0.93488 1.63379 0.99347 1.53869 1.06847 1.22763 0.92433 0.95553 0.96342 1.23297 0.99173 0.99307 0.96729 1.19488 0.86101 0.81559 0.91559 1.86153 1.23557 1.31938 1.96864 1.21499 0.94793 1.37183 1.04120 0.92178 1.25001 0.96305 0.95062 0.96709 1.69740 1.02342 1.46982 1.34168 0.86540 0.77308 0.79982 0.83465 1.20051 1.21168 1.20232 1.23032 0.98039 0.99694 0.85997 0.88527 0.88712 0.90360 0.91927 0.91994 0.90443 0.89329 0.90528 0.90159 0.91415 0.92100 0.92426 0.88782 0.92381 0.91155 0.95273 0.90412 0.92811 0.77423 0.92326 0.93523 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 13.93 29.01 0.40 -1.27 16 2 C -0.13 -1.36 5.63 -101.07 -0.57 -1.93 16 3 C -0.12 -1.44 10.05 36.01 0.36 -1.07 16 4 C 0.15 1.61 5.48 -5.20 -0.03 1.58 16 5 N -0.62 -7.32 2.46 -175.07 -0.43 -7.75 16 6 C 0.11 0.92 5.93 -4.05 -0.02 0.90 16 7 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 8 C 0.52 8.18 7.32 -10.99 -0.08 8.10 16 9 O -0.51 -9.88 13.88 5.55 0.08 -9.81 16 10 C 0.03 0.54 3.58 -4.97 -0.02 0.53 16 11 N -0.51 -10.50 4.85 -232.69 -1.13 -11.63 16 12 C 0.06 1.21 5.65 -2.84 -0.02 1.20 16 13 C -0.15 -3.47 5.37 -24.91 -0.13 -3.61 16 14 C 0.25 6.41 0.87 -89.64 -0.08 6.33 16 15 O -0.58 -15.59 13.16 -35.23 -0.46 -16.06 16 16 C -0.54 -14.42 8.27 -34.44 -0.28 -14.71 16 17 H 0.06 1.58 7.79 -52.48 -0.41 1.17 16 18 C 0.07 1.91 5.29 -17.82 -0.09 1.81 16 19 N -0.89 -24.08 10.75 55.43 0.60 -23.48 16 20 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.06 1.30 5.86 -2.30 -0.01 1.29 16 25 H 0.10 0.78 8.05 -52.48 -0.42 0.36 16 26 H 0.09 0.68 7.99 -52.49 -0.42 0.26 16 27 H 0.08 1.11 6.71 -51.93 -0.35 0.76 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.65 7.92 -51.93 -0.41 0.24 16 31 H 0.09 1.10 7.42 -51.93 -0.39 0.72 16 32 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.08 0.68 6.44 -51.93 -0.33 0.35 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.60 7.22 -51.93 -0.37 0.22 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 1.32 7.33 -51.93 -0.38 0.94 16 38 H 0.06 0.87 7.00 -51.93 -0.36 0.50 16 39 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.03 0.58 7.31 -51.93 -0.38 0.20 16 41 H 0.08 1.97 7.54 -51.93 -0.39 1.58 16 42 H 0.05 1.29 8.04 -51.93 -0.42 0.87 16 43 H 0.38 10.20 7.56 45.56 0.34 10.54 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 46 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -30.25 366.66 -8.22 -38.47 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.18 Total: 11.00 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.19 Total: -1.87 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -0.96 Total: -42.86 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.39 Total: -25.86 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.25 -8.22 -38.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.872 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds