Wall clock time and date at job start Tue Mar 31 2020 03:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99716 * 2 1 4 4 C 1.50697 * 120.00076 * 179.97438 * 2 1 3 5 5 N 1.46497 * 109.47271 * 94.99853 * 4 2 1 6 6 C 1.46494 * 120.00052 * 269.99936 * 5 4 2 7 7 C 1.52998 * 109.47381 * 269.99778 * 6 5 4 8 8 C 1.34774 * 119.99603 * 90.00109 * 5 4 2 9 9 O 1.21288 * 120.00438 * 0.02562 * 8 5 4 10 10 C 1.50700 * 119.99916 * 179.97438 * 8 5 4 11 11 N 1.46906 * 109.47059 * 180.02562 * 10 8 5 12 12 C 1.47436 * 110.99898 * 69.87536 * 11 10 8 13 13 C 1.54324 * 107.23089 * 123.25894 * 12 11 10 14 14 C 1.55140 * 103.01888 * 22.28261 * 13 12 11 15 15 O 1.42900 * 110.98963 * 82.47893 * 14 13 12 16 16 C 1.50700 * 110.98925 * 206.25481 * 14 13 12 17 17 H 1.08003 * 119.99796 * 118.54658 * 16 14 13 18 18 C 1.37874 * 120.00556 * 298.54821 * 16 14 13 19 19 N 1.31516 * 119.99369 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00588 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46930 * 59.99529 * 20 18 16 22 22 H 1.48501 * 109.46989 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46846 * 299.99905 * 20 18 16 24 24 C 1.47851 * 110.99786 * 190.72090 * 11 10 8 25 25 H 1.08005 * 120.00020 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99961 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46666 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46993 * 299.99307 * 3 2 1 29 29 H 1.08994 * 109.47247 * 59.99811 * 3 2 1 30 30 H 1.09004 * 109.47237 * 334.99836 * 4 2 1 31 31 H 1.08996 * 109.46857 * 215.00652 * 4 2 1 32 32 H 1.09000 * 109.47602 * 30.00404 * 6 5 4 33 33 H 1.08999 * 109.46820 * 150.00168 * 6 5 4 34 34 H 1.08999 * 109.47407 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.47263 * 300.00833 * 7 6 5 36 36 H 1.08999 * 109.46825 * 60.00393 * 7 6 5 37 37 H 1.09003 * 109.46865 * 60.00495 * 10 8 5 38 38 H 1.08999 * 109.47499 * 300.00425 * 10 8 5 39 39 H 1.08998 * 109.88931 * 242.66034 * 12 11 10 40 40 H 1.09003 * 109.89178 * 3.85625 * 12 11 10 41 41 H 1.08995 * 110.70829 * 140.66528 * 13 12 11 42 42 H 1.08998 * 110.70384 * 263.72400 * 13 12 11 43 43 H 0.96700 * 114.00026 * 61.45323 * 15 14 13 44 44 H 0.97003 * 119.99602 * 180.02562 * 19 18 16 45 45 H 1.08997 * 110.37354 * 332.46432 * 24 11 10 46 46 H 1.08994 * 110.37029 * 94.80655 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6684 -1.3752 6 6 1.4916 -2.4821 -2.1733 7 6 1.8149 -3.9639 -1.9717 8 6 3.5792 -1.2541 -1.9065 9 8 4.3413 -0.5809 -1.2455 10 6 3.9379 -1.6284 -3.3215 11 7 5.2495 -1.0603 -3.6607 12 6 6.3275 -1.7403 -2.9196 13 6 7.3239 -2.2886 -3.9627 14 6 7.0532 -1.4002 -5.2054 15 8 7.7530 -0.1580 -5.1087 16 6 7.4172 -2.1240 -6.4761 17 1 6.6591 -2.3265 -7.2182 18 6 8.7178 -2.5278 -6.6913 19 7 9.6409 -2.2807 -5.7878 20 14 9.1690 -3.4244 -8.2667 21 1 8.8644 -2.5582 -9.4338 22 1 10.6185 -3.7468 -8.2549 23 1 8.3828 -4.6804 -8.3639 24 6 5.5223 -1.1847 -5.1085 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 3.1351 1.1060 0.0005 28 1 1.8002 1.8767 -0.8901 29 1 1.8001 1.8767 0.8899 30 1 1.4386 -2.0853 0.4353 31 1 2.9741 -1.1985 0.5901 32 1 0.4668 -2.2875 -1.8571 33 1 1.6013 -2.2265 -3.2272 34 1 1.1299 -4.5693 -2.5652 35 1 2.8397 -4.1585 -2.2879 36 1 1.7052 -4.2195 -0.9178 37 1 3.1839 -1.2353 -4.0035 38 1 3.9783 -2.7139 -3.4112 39 1 6.8310 -1.0307 -2.2631 40 1 5.9141 -2.5616 -2.3342 41 1 8.3503 -2.1655 -3.6172 42 1 7.1154 -3.3359 -4.1815 43 1 8.7147 -0.2504 -5.0682 44 1 10.5561 -2.5645 -5.9393 45 1 4.9915 -2.0420 -5.5224 46 1 5.2340 -0.2714 -5.6288 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:50 Heat of formation + Delta-G solvation = -78.440205 kcal Electronic energy + Delta-G solvation = -25166.635970 eV Core-core repulsion = 21670.029719 eV Total energy + Delta-G solvation = -3496.606251 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25374 -39.77266 -37.58373 -36.35175 -35.72007 -34.17277 -31.98466 -31.35476 -29.92162 -28.89432 -28.11956 -26.86050 -25.58341 -24.11592 -22.05982 -21.43706 -20.40321 -19.17427 -18.97351 -17.99075 -17.41037 -17.02042 -16.84874 -16.58618 -15.97388 -15.73435 -15.33375 -14.95593 -14.82124 -14.68757 -14.24873 -14.13062 -14.02694 -13.83922 -13.53677 -13.45115 -13.14054 -12.89458 -12.82229 -12.80231 -12.58307 -12.55963 -12.44619 -12.27743 -12.19983 -12.15853 -11.91928 -11.69732 -11.12186 -10.77691 -10.58787 -10.08064 -10.02151 -9.63740 -9.15070 -8.19673 -6.36577 1.14833 1.42835 1.44661 1.52058 1.69445 2.17079 2.39814 3.03594 3.15708 3.57215 3.92855 3.95688 3.97185 4.05532 4.06927 4.15654 4.31762 4.37030 4.40311 4.45404 4.53423 4.59956 4.68277 4.70535 4.72728 4.80702 4.89161 4.92038 4.99309 5.06952 5.07415 5.13842 5.25740 5.37013 5.46373 5.53406 5.61772 5.68336 5.79439 5.93018 5.94086 6.10961 6.21956 6.45954 6.69755 7.29493 7.35024 7.45354 8.85628 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027818 B = 0.003510 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.312787 B = 7975.135386 C = 8459.914225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.157 4.157 3 C -0.119 4.119 4 C 0.150 3.850 5 N -0.607 5.607 6 C 0.099 3.901 7 C -0.169 4.169 8 C 0.514 3.486 9 O -0.557 6.557 10 C 0.033 3.967 11 N -0.525 5.525 12 C 0.073 3.927 13 C -0.134 4.134 14 C 0.234 3.766 15 O -0.590 6.590 16 C -0.560 4.560 17 H 0.061 0.939 18 C 0.028 3.972 19 N -0.913 5.913 20 Si 0.963 3.037 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.268 1.268 24 C 0.069 3.931 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.371 0.629 44 H 0.268 0.732 45 H 0.064 0.936 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.296 -3.249 9.261 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.176 4.176 4 C 0.028 3.972 5 N -0.341 5.341 6 C -0.023 4.023 7 C -0.227 4.227 8 C 0.302 3.698 9 O -0.434 6.434 10 C -0.098 4.098 11 N -0.250 5.250 12 C -0.055 4.055 13 C -0.174 4.174 14 C 0.194 3.806 15 O -0.397 6.397 16 C -0.598 4.598 17 H 0.079 0.921 18 C -0.173 4.173 19 N -0.552 5.552 20 Si 0.788 3.212 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.193 1.193 24 C -0.058 4.058 25 H 0.122 0.878 26 H 0.137 0.863 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.219 0.781 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.336 -2.164 9.790 22.674 hybrid contribution 1.474 -1.315 -0.888 2.166 sum -18.862 -3.479 8.902 21.145 Atomic orbital electron populations 1.23880 0.94211 1.03154 0.98964 1.22086 0.96145 0.95646 1.01958 1.20806 0.99889 0.95333 1.01557 1.20508 0.99485 0.94513 0.82710 1.48113 1.18833 1.52616 1.14499 1.21836 0.94021 0.90267 0.96172 1.22198 1.01896 0.95724 1.02892 1.20797 0.81123 0.78969 0.88951 1.90667 1.50996 1.38994 1.62770 1.22301 0.93546 0.99446 0.94475 1.63222 1.01023 1.54913 1.05817 1.22490 0.92279 0.95244 0.95442 1.23096 0.98419 0.98874 0.96976 1.19803 0.88008 0.81101 0.91703 1.86149 1.23237 1.33347 1.96956 1.21783 0.95319 1.37857 1.04871 0.92084 1.25752 0.96204 0.95695 0.99604 1.69852 1.02501 1.47329 1.35531 0.85546 0.77022 0.78980 0.79659 1.19902 1.20935 1.19322 1.22887 0.95773 1.00102 0.87007 0.87766 0.86311 0.93704 0.92689 0.90742 0.87293 0.91929 0.87825 0.89672 0.89319 0.94131 0.92039 0.86423 0.90679 0.93481 0.93729 0.92841 0.93181 0.78103 0.92295 0.91749 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 13.93 67.78 0.94 -1.29 16 2 C -0.16 -3.03 5.63 -16.49 -0.09 -3.12 16 3 C -0.12 -2.79 10.05 71.24 0.72 -2.07 16 4 C 0.15 2.98 5.48 85.63 0.47 3.45 16 5 N -0.61 -13.25 2.46 -826.19 -2.03 -15.28 16 6 C 0.10 1.37 5.93 86.38 0.51 1.88 16 7 C -0.17 -2.17 10.24 71.98 0.74 -1.43 16 8 C 0.51 15.95 7.32 87.66 0.64 16.59 16 9 O -0.56 -22.27 13.88 -3.05 -0.04 -22.32 16 10 C 0.03 1.02 3.58 85.56 0.31 1.33 16 11 N -0.53 -21.57 4.85 -890.08 -4.32 -25.89 16 12 C 0.07 3.20 5.65 86.65 0.49 3.69 16 13 C -0.13 -6.55 5.37 31.78 0.17 -6.38 16 14 C 0.23 12.00 0.87 -10.16 -0.01 11.99 16 15 O -0.59 -32.83 13.16 -148.98 -1.96 -34.79 16 16 C -0.56 -30.14 8.27 25.60 0.21 -29.93 16 17 H 0.06 3.19 7.79 -2.91 -0.02 3.16 16 18 C 0.03 1.49 5.29 84.65 0.45 1.94 16 19 N -0.91 -49.96 10.75 21.45 0.23 -49.73 16 20 Si 0.96 42.03 29.54 68.60 2.03 44.06 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 C 0.07 3.02 5.86 86.77 0.51 3.53 16 25 H 0.10 1.30 8.05 -2.91 -0.02 1.27 16 26 H 0.12 1.08 7.99 -2.91 -0.02 1.05 16 27 H 0.04 1.35 6.71 -2.39 -0.02 1.33 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.11 1.45 7.92 -2.38 -0.02 1.43 16 31 H 0.06 1.58 7.42 -2.39 -0.02 1.57 16 32 H 0.10 0.94 8.07 -2.39 -0.02 0.92 16 33 H 0.08 1.13 6.44 -2.39 -0.02 1.12 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.04 0.69 7.22 -2.39 -0.02 0.68 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.12 3.02 7.33 -2.39 -0.02 3.00 16 38 H 0.08 2.08 7.00 -2.39 -0.02 2.06 16 39 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.04 1.78 7.31 -2.39 -0.02 1.76 16 41 H 0.05 2.82 7.54 -2.39 -0.02 2.80 16 42 H 0.05 2.42 8.04 -2.39 -0.02 2.40 16 43 H 0.37 20.94 7.56 -74.06 -0.56 20.38 16 44 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.06 2.54 7.70 -2.39 -0.02 2.52 16 46 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -67.20 366.66 0.35 -66.85 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: 0.39 Total: 36.91 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 6.05 Total: 0.19 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -6.12 Total: -90.89 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -2.00 Total: -57.11 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -67.20 0.35 -66.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.594 kcal (2) G-P(sol) polarization free energy of solvation -67.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds