Wall clock time and date at job start Tue Mar 31 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47055 * 2 1 4 4 C 1.50703 * 109.47173 * 239.99655 * 2 1 3 5 5 O 1.21271 * 120.00193 * 256.02404 * 4 2 1 6 6 N 1.34779 * 119.99700 * 76.02849 * 4 2 1 7 7 C 1.46926 * 120.63064 * 354.11052 * 6 4 2 8 8 C 1.53625 * 108.54284 * 126.36760 * 7 6 4 9 9 C 1.53040 * 109.23868 * 54.85807 * 8 7 6 10 10 C 1.53039 * 109.53859 * 298.50729 * 9 8 7 11 11 C 1.46922 * 120.63013 * 174.39082 * 6 4 2 12 12 N 1.46904 * 109.46910 * 120.00043 * 2 1 3 13 13 C 1.48530 * 110.99685 * 305.02153 * 12 2 1 14 14 C 1.55203 * 103.23326 * 200.25634 * 13 12 2 15 15 C 1.54596 * 102.80191 * 37.43434 * 14 13 12 16 16 O 1.42892 * 110.30828 * 219.04714 * 15 14 13 17 17 C 1.50700 * 110.30737 * 96.98056 * 15 14 13 18 18 H 1.07999 * 120.00108 * 242.79351 * 17 15 14 19 19 C 1.37878 * 120.00004 * 62.51447 * 17 15 14 20 20 N 1.31517 * 119.99672 * 180.02562 * 19 17 15 21 21 Si 1.86800 * 120.00146 * 359.97438 * 19 17 15 22 22 H 1.48494 * 109.47101 * 90.00062 * 21 19 17 23 23 H 1.48499 * 109.47021 * 209.99995 * 21 19 17 24 24 H 1.48503 * 109.46704 * 329.99959 * 21 19 17 25 25 C 1.47903 * 110.99981 * 187.62377 * 12 2 1 26 26 H 1.09001 * 109.47021 * 302.19670 * 1 2 3 27 27 H 1.09000 * 109.46890 * 62.19721 * 1 2 3 28 28 H 1.08996 * 109.47416 * 182.19924 * 1 2 3 29 29 H 1.08993 * 109.58773 * 246.20647 * 7 6 4 30 30 H 1.09009 * 109.59025 * 6.62809 * 7 6 4 31 31 H 1.08994 * 109.63524 * 294.86552 * 8 7 6 32 32 H 1.09002 * 109.45765 * 174.74141 * 8 7 6 33 33 H 1.08999 * 109.45716 * 178.48688 * 9 8 7 34 34 H 1.09002 * 109.45117 * 58.52776 * 9 8 7 35 35 H 1.08997 * 109.49655 * 301.41796 * 10 9 8 36 36 H 1.09001 * 109.52355 * 181.32871 * 10 9 8 37 37 H 1.08994 * 109.58794 * 353.37566 * 11 6 4 38 38 H 1.09006 * 109.58176 * 113.65796 * 11 6 4 39 39 H 1.08993 * 110.67182 * 318.71143 * 13 12 2 40 40 H 1.09002 * 110.66742 * 81.68476 * 13 12 2 41 41 H 1.08995 * 110.76419 * 279.12360 * 14 13 12 42 42 H 1.09001 * 110.79601 * 155.76459 * 14 13 12 43 43 H 0.96704 * 114.00059 * 297.20970 * 16 15 14 44 44 H 0.97002 * 119.99630 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.91431 * 26.49101 * 25 12 2 46 46 H 1.08991 * 109.91656 * 265.20095 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.4736 -1.8367 -1.1427 6 7 1.9913 -0.0942 -2.4284 7 6 1.3436 1.2165 -2.5741 8 6 2.3420 2.1850 -3.2263 9 6 2.8437 1.5826 -4.5406 10 6 3.5675 0.2646 -4.2563 11 6 2.5879 -0.7231 -3.6146 12 7 2.0196 -0.6925 1.1995 13 6 1.4467 -0.0926 2.4315 14 6 2.4294 -0.5532 3.5411 15 6 3.8024 -0.4811 2.8342 16 8 4.6199 -1.5860 3.2248 17 6 4.4910 0.8191 3.1604 18 1 4.7115 1.5255 2.3738 19 6 4.8343 1.1093 4.4638 20 7 5.4348 2.2442 4.7485 21 14 4.4453 -0.1089 5.8255 22 1 5.5868 -1.0434 5.9947 23 1 4.2143 0.6254 7.0954 24 1 3.2254 -0.8769 5.4688 25 6 3.4866 -0.5557 1.3288 26 1 -0.3633 0.5476 0.8696 27 1 -0.3633 0.4793 -0.9090 28 1 -0.3634 -1.0268 0.0394 29 1 0.4597 1.1193 -3.2043 30 1 1.0553 1.5929 -1.5925 31 1 3.1854 2.3482 -2.5555 32 1 1.8476 3.1355 -3.4269 33 1 3.5320 2.2789 -5.0198 34 1 1.9968 1.3968 -5.2013 35 1 4.3994 0.4458 -3.5758 36 1 3.9452 -0.1524 -5.1899 37 1 3.1209 -1.6270 -3.3198 38 1 1.8031 -0.9776 -4.3270 39 1 1.4309 0.9948 2.3585 40 1 0.4447 -0.4791 2.6176 41 1 2.2092 -1.5741 3.8528 42 1 2.3977 0.1266 4.3926 43 1 4.8335 -1.6032 4.1678 44 1 5.6760 2.4485 5.6656 45 1 3.8195 0.3567 0.8339 46 1 3.9806 -1.4216 0.8882 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:33 Heat of formation + Delta-G solvation = -59.233729 kcal Electronic energy + Delta-G solvation = -25917.476908 eV Core-core repulsion = 22421.703512 eV Total energy + Delta-G solvation = -3495.773396 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.38336 -38.60742 -37.17409 -35.43915 -33.22048 -32.41196 -31.95117 -30.95421 -28.79733 -27.80358 -25.83700 -24.48280 -23.81402 -23.05769 -21.21964 -20.20675 -19.64313 -18.81566 -17.30531 -17.05227 -16.10941 -15.72771 -15.44017 -15.12304 -14.72604 -14.39483 -14.20800 -13.84826 -13.83364 -13.50769 -13.43055 -12.91493 -12.71681 -12.54698 -12.35353 -12.20091 -12.04263 -11.92431 -11.63345 -11.41775 -11.31564 -11.14206 -10.92181 -10.79465 -10.72923 -10.67834 -10.47610 -10.05968 -9.74964 -9.36999 -9.16211 -8.76417 -8.60809 -8.44897 -7.81129 -6.26940 -4.31269 2.83241 2.97757 3.12679 3.20642 3.26554 4.20479 4.34766 4.51300 4.59054 4.68499 4.78814 4.92416 4.95486 5.10737 5.14973 5.22395 5.33221 5.35791 5.46586 5.55491 5.58259 5.61056 5.66019 5.68296 5.73934 5.77552 5.87208 5.89849 5.94945 6.03959 6.15483 6.17229 6.23166 6.49617 6.54584 6.69046 6.76300 6.91381 7.01881 7.22850 7.34404 7.58823 7.65974 8.30133 8.41812 8.74305 8.83058 9.33085 10.85599 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.022021 B = 0.004443 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.197190 B = 6301.022845 C = 6592.066833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 H 0.065 0.935 4 C 0.523 3.477 5 O -0.513 6.513 6 N -0.620 5.620 7 C 0.105 3.895 8 C -0.139 4.139 9 C -0.118 4.118 10 C -0.136 4.136 11 C 0.113 3.887 12 N -0.495 5.495 13 C 0.046 3.954 14 C -0.150 4.150 15 C 0.211 3.789 16 O -0.572 6.572 17 C -0.534 4.534 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.887 5.887 21 Si 0.842 3.158 22 H -0.273 1.273 23 H -0.287 1.287 24 H -0.231 1.231 25 C 0.067 3.933 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.349 0.651 44 H 0.267 0.733 45 H 0.046 0.954 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.775 0.239 -15.088 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.056 4.056 3 H 0.082 0.918 4 C 0.311 3.689 5 O -0.386 6.386 6 N -0.356 5.356 7 C -0.019 4.019 8 C -0.177 4.177 9 C -0.156 4.156 10 C -0.174 4.174 11 C -0.009 4.009 12 N -0.220 5.220 13 C -0.082 4.082 14 C -0.189 4.189 15 C 0.171 3.829 16 O -0.381 6.381 17 C -0.572 4.572 18 H 0.096 0.904 19 C -0.126 4.126 20 N -0.524 5.524 21 Si 0.669 3.331 22 H -0.199 1.199 23 H -0.213 1.213 24 H -0.155 1.155 25 C -0.060 4.060 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.198 0.802 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.659 -0.961 -15.585 18.905 hybrid contribution 0.272 0.779 1.418 1.641 sum -10.387 -0.182 -14.167 17.567 Atomic orbital electron populations 1.21875 0.92426 1.03497 1.02342 1.21763 0.96908 0.96195 0.90735 0.91793 1.20605 0.78088 0.86462 0.83773 1.90686 1.44632 1.18120 1.85200 1.48113 1.58509 1.20433 1.08540 1.21922 0.95093 0.82831 1.02015 1.22026 0.99882 0.98293 0.97508 1.21496 1.00138 0.96843 0.97080 1.21928 0.98673 0.95836 1.01002 1.21511 0.96152 0.96772 0.86481 1.64697 1.06925 1.50584 0.99830 1.23151 0.98033 0.97299 0.89667 1.23704 0.97511 1.00141 0.97517 1.19976 0.86798 0.85521 0.90573 1.86497 1.72986 1.50749 1.27826 1.21493 1.39132 1.01732 0.94820 0.90422 1.25023 0.93961 0.95044 0.98620 1.69894 1.39736 1.22794 1.19983 0.87794 0.80802 0.82432 0.82037 1.19946 1.21321 1.15532 1.22635 0.86233 1.00523 0.96610 0.91108 0.91955 0.91168 0.91411 0.89293 0.91091 0.90741 0.91740 0.91920 0.91301 0.90885 0.89085 0.91955 0.93374 0.91080 0.92198 0.90725 0.80236 0.92317 0.93584 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.49 37.16 0.32 -1.45 16 2 C 0.06 0.90 1.37 -68.86 -0.09 0.81 16 3 H 0.06 1.00 6.82 -51.93 -0.35 0.64 16 4 C 0.52 8.71 6.51 -10.98 -0.07 8.64 16 5 O -0.51 -10.61 15.17 5.57 0.08 -10.53 16 6 N -0.62 -7.94 2.97 -172.50 -0.51 -8.45 16 7 C 0.10 1.00 5.40 -3.49 -0.02 0.98 16 8 C -0.14 -1.21 6.10 -26.39 -0.16 -1.38 16 9 C -0.12 -0.95 5.88 -26.69 -0.16 -1.11 16 10 C -0.14 -1.29 6.08 -26.61 -0.16 -1.46 16 11 C 0.11 1.29 6.41 -3.71 -0.02 1.26 16 12 N -0.49 -9.75 4.75 -223.72 -1.06 -10.82 16 13 C 0.05 0.86 5.22 -1.75 -0.01 0.85 16 14 C -0.15 -3.29 4.23 -24.73 -0.10 -3.39 16 15 C 0.21 5.22 0.96 -90.42 -0.09 5.13 16 16 O -0.57 -14.69 12.91 -35.23 -0.45 -15.15 16 17 C -0.53 -14.88 8.84 -34.44 -0.30 -15.18 16 18 H 0.08 2.35 7.59 -52.49 -0.40 1.95 16 19 C 0.08 2.15 5.36 -17.82 -0.10 2.06 16 20 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 21 Si 0.84 19.75 23.21 -169.99 -3.95 15.81 16 22 H -0.27 -6.33 7.03 56.52 0.40 -5.93 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.23 -5.01 4.42 56.52 0.25 -4.76 16 25 C 0.07 1.54 5.30 -2.76 -0.01 1.53 16 26 H 0.07 0.81 6.96 -51.93 -0.36 0.45 16 27 H 0.06 0.60 6.26 -51.93 -0.33 0.27 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.84 4.76 -51.92 -0.25 0.59 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 1.23 7.04 -51.93 -0.37 0.86 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.89 8.02 -51.93 -0.42 0.47 16 40 H 0.07 1.15 7.69 -51.93 -0.40 0.75 16 41 H 0.06 1.28 7.83 -51.93 -0.41 0.88 16 42 H 0.07 1.66 5.10 -51.93 -0.26 1.39 16 43 H 0.35 8.42 4.57 45.56 0.21 8.63 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.05 1.07 6.85 -51.93 -0.36 0.71 16 46 H 0.08 1.99 7.54 -51.93 -0.39 1.60 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -33.07 336.32 -8.21 -41.28 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -7.17 Total: 11.00 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.99 Total: -2.71 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.80 Total: -44.78 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.37 Total: -25.68 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -3.95 Total: 15.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.07 -8.21 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.950 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds