Wall clock time and date at job start Tue Mar 31 2020 03:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47055 * 2 1 4 4 C 1.50703 * 109.47173 * 239.99655 * 2 1 3 5 5 O 1.21271 * 120.00193 * 256.02404 * 4 2 1 6 6 N 1.34779 * 119.99700 * 76.02849 * 4 2 1 7 7 C 1.46926 * 120.63064 * 354.11052 * 6 4 2 8 8 C 1.53625 * 108.54284 * 126.36760 * 7 6 4 9 9 C 1.53040 * 109.23868 * 54.85807 * 8 7 6 10 10 C 1.53039 * 109.53859 * 298.50729 * 9 8 7 11 11 C 1.46922 * 120.63013 * 174.39082 * 6 4 2 12 12 N 1.46904 * 109.46910 * 120.00043 * 2 1 3 13 13 C 1.48530 * 110.99685 * 305.02153 * 12 2 1 14 14 C 1.55203 * 103.23326 * 200.25634 * 13 12 2 15 15 C 1.54596 * 102.80191 * 37.43434 * 14 13 12 16 16 O 1.42892 * 110.30828 * 219.04714 * 15 14 13 17 17 C 1.50700 * 110.30737 * 96.98056 * 15 14 13 18 18 H 1.07999 * 120.00108 * 242.79351 * 17 15 14 19 19 C 1.37878 * 120.00004 * 62.51447 * 17 15 14 20 20 N 1.31517 * 119.99672 * 180.02562 * 19 17 15 21 21 Si 1.86800 * 120.00146 * 359.97438 * 19 17 15 22 22 H 1.48494 * 109.47101 * 90.00062 * 21 19 17 23 23 H 1.48499 * 109.47021 * 209.99995 * 21 19 17 24 24 H 1.48503 * 109.46704 * 329.99959 * 21 19 17 25 25 C 1.47903 * 110.99981 * 187.62377 * 12 2 1 26 26 H 1.09001 * 109.47021 * 302.19670 * 1 2 3 27 27 H 1.09000 * 109.46890 * 62.19721 * 1 2 3 28 28 H 1.08996 * 109.47416 * 182.19924 * 1 2 3 29 29 H 1.08993 * 109.58773 * 246.20647 * 7 6 4 30 30 H 1.09009 * 109.59025 * 6.62809 * 7 6 4 31 31 H 1.08994 * 109.63524 * 294.86552 * 8 7 6 32 32 H 1.09002 * 109.45765 * 174.74141 * 8 7 6 33 33 H 1.08999 * 109.45716 * 178.48688 * 9 8 7 34 34 H 1.09002 * 109.45117 * 58.52776 * 9 8 7 35 35 H 1.08997 * 109.49655 * 301.41796 * 10 9 8 36 36 H 1.09001 * 109.52355 * 181.32871 * 10 9 8 37 37 H 1.08994 * 109.58794 * 353.37566 * 11 6 4 38 38 H 1.09006 * 109.58176 * 113.65796 * 11 6 4 39 39 H 1.08993 * 110.67182 * 318.71143 * 13 12 2 40 40 H 1.09002 * 110.66742 * 81.68476 * 13 12 2 41 41 H 1.08995 * 110.76419 * 279.12360 * 14 13 12 42 42 H 1.09001 * 110.79601 * 155.76459 * 14 13 12 43 43 H 0.96704 * 114.00059 * 297.20970 * 16 15 14 44 44 H 0.97002 * 119.99630 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.91431 * 26.49101 * 25 12 2 46 46 H 1.08991 * 109.91656 * 265.20095 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.4736 -1.8367 -1.1427 6 7 1.9913 -0.0942 -2.4284 7 6 1.3436 1.2165 -2.5741 8 6 2.3420 2.1850 -3.2263 9 6 2.8437 1.5826 -4.5406 10 6 3.5675 0.2646 -4.2563 11 6 2.5879 -0.7231 -3.6146 12 7 2.0196 -0.6925 1.1995 13 6 1.4467 -0.0926 2.4315 14 6 2.4294 -0.5532 3.5411 15 6 3.8024 -0.4811 2.8342 16 8 4.6199 -1.5860 3.2248 17 6 4.4910 0.8191 3.1604 18 1 4.7115 1.5255 2.3738 19 6 4.8343 1.1093 4.4638 20 7 5.4348 2.2442 4.7485 21 14 4.4453 -0.1089 5.8255 22 1 5.5868 -1.0434 5.9947 23 1 4.2143 0.6254 7.0954 24 1 3.2254 -0.8769 5.4688 25 6 3.4866 -0.5557 1.3288 26 1 -0.3633 0.5476 0.8696 27 1 -0.3633 0.4793 -0.9090 28 1 -0.3634 -1.0268 0.0394 29 1 0.4597 1.1193 -3.2043 30 1 1.0553 1.5929 -1.5925 31 1 3.1854 2.3482 -2.5555 32 1 1.8476 3.1355 -3.4269 33 1 3.5320 2.2789 -5.0198 34 1 1.9968 1.3968 -5.2013 35 1 4.3994 0.4458 -3.5758 36 1 3.9452 -0.1524 -5.1899 37 1 3.1209 -1.6270 -3.3198 38 1 1.8031 -0.9776 -4.3270 39 1 1.4309 0.9948 2.3585 40 1 0.4447 -0.4791 2.6176 41 1 2.2092 -1.5741 3.8528 42 1 2.3977 0.1266 4.3926 43 1 4.8335 -1.6032 4.1678 44 1 5.6760 2.4485 5.6656 45 1 3.8195 0.3567 0.8339 46 1 3.9806 -1.4216 0.8882 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:32 Heat of formation + Delta-G solvation = -85.770608 kcal Electronic energy + Delta-G solvation = -25918.627633 eV Core-core repulsion = 22421.703512 eV Total energy + Delta-G solvation = -3496.924121 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.61422 -40.16690 -38.35151 -37.14035 -34.59704 -34.34350 -33.18454 -31.91830 -30.35441 -29.62096 -26.84209 -26.41620 -24.86369 -24.05697 -22.51873 -21.63448 -21.23510 -19.93001 -19.19412 -18.48151 -17.67942 -17.45471 -16.80567 -16.33934 -15.79945 -15.62459 -15.47110 -15.29035 -15.13933 -14.78902 -14.63447 -14.42285 -14.22051 -13.95057 -13.80042 -13.70244 -13.41662 -13.22776 -12.92635 -12.75008 -12.54719 -12.39764 -12.33165 -12.20971 -12.02687 -11.85385 -11.59778 -11.55330 -11.50932 -11.12306 -10.80521 -10.65052 -10.46081 -9.63992 -9.38726 -8.43883 -6.55787 1.26501 1.31338 1.39469 1.57660 1.92685 2.20475 2.80354 2.96639 3.42865 3.59401 3.79187 3.86241 3.91988 3.95941 3.99964 4.07615 4.12047 4.16079 4.33969 4.36116 4.49939 4.51932 4.57980 4.66351 4.76940 4.79859 4.85773 4.88854 4.89885 4.92255 5.00040 5.04037 5.12279 5.14000 5.17155 5.18688 5.24035 5.35582 5.42936 5.57848 5.80309 5.95399 6.15232 6.38946 6.49111 6.87328 7.13233 7.19564 8.71775 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.022021 B = 0.004443 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.197190 B = 6301.022845 C = 6592.066833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.053 3.947 3 H 0.066 0.934 4 C 0.515 3.485 5 O -0.567 6.567 6 N -0.614 5.614 7 C 0.097 3.903 8 C -0.139 4.139 9 C -0.114 4.114 10 C -0.133 4.133 11 C 0.109 3.891 12 N -0.501 5.501 13 C 0.052 3.948 14 C -0.150 4.150 15 C 0.203 3.797 16 O -0.584 6.584 17 C -0.545 4.545 18 H 0.033 0.967 19 C 0.025 3.975 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.199 1.199 25 C 0.080 3.920 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.355 0.645 44 H 0.271 0.729 45 H 0.028 0.972 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.854 0.198 -15.721 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 H 0.084 0.916 4 C 0.303 3.697 5 O -0.445 6.445 6 N -0.348 5.348 7 C -0.025 4.025 8 C -0.177 4.177 9 C -0.151 4.151 10 C -0.171 4.171 11 C -0.013 4.013 12 N -0.227 5.227 13 C -0.075 4.075 14 C -0.188 4.188 15 C 0.164 3.836 16 O -0.393 6.393 17 C -0.583 4.583 18 H 0.051 0.949 19 C -0.174 4.174 20 N -0.571 5.571 21 Si 0.727 3.273 22 H -0.193 1.193 23 H -0.209 1.209 24 H -0.121 1.121 25 C -0.048 4.048 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.128 0.872 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.204 0.796 44 H 0.080 0.920 45 H 0.046 0.954 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.763 -0.963 -16.267 21.330 hybrid contribution 1.310 0.893 1.465 2.159 sum -12.453 -0.069 -14.802 19.344 Atomic orbital electron populations 1.21888 0.88942 1.03736 1.04718 1.21925 0.99536 0.95503 0.88928 0.91619 1.20829 0.77728 0.86033 0.85080 1.90658 1.47304 1.20405 1.86110 1.48229 1.57497 1.21291 1.07771 1.22251 0.96107 0.81080 1.03039 1.22040 0.98972 0.99399 0.97257 1.21502 1.00907 0.95696 0.97018 1.21911 0.97520 0.96669 1.00986 1.21652 0.97119 0.96162 0.86375 1.64651 1.04385 1.51893 1.01756 1.23212 0.98852 0.97532 0.87896 1.23613 0.95999 1.00878 0.98293 1.20068 0.87931 0.83618 0.92027 1.86491 1.73589 1.50748 1.28510 1.21599 1.40013 1.02514 0.94132 0.94870 1.25890 0.93372 0.96945 1.01228 1.70036 1.41081 1.25073 1.20881 0.86783 0.82138 0.80213 0.78171 1.19273 1.20883 1.12113 1.22340 0.88912 0.98321 0.95261 0.89635 0.88834 0.91818 0.88115 0.89122 0.93910 0.88138 0.90858 0.89663 0.94159 0.88884 0.92078 0.89223 0.93208 0.87240 0.91035 0.90884 0.79584 0.92008 0.95382 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.49 71.98 0.61 -2.30 16 2 C 0.05 1.65 1.37 44.17 0.06 1.71 16 3 H 0.07 2.03 6.82 -2.39 -0.02 2.01 16 4 C 0.52 17.31 6.51 87.66 0.57 17.88 16 5 O -0.57 -24.41 15.17 -3.00 -0.05 -24.46 16 6 N -0.61 -15.25 2.97 -818.07 -2.43 -17.68 16 7 C 0.10 1.59 5.40 86.51 0.47 2.06 16 8 C -0.14 -2.15 6.10 30.82 0.19 -1.96 16 9 C -0.11 -1.55 5.88 30.62 0.18 -1.37 16 10 C -0.13 -2.43 6.08 30.67 0.19 -2.24 16 11 C 0.11 2.42 6.41 86.36 0.55 2.97 16 12 N -0.50 -19.56 4.75 -861.70 -4.09 -23.65 16 13 C 0.05 1.83 5.22 86.74 0.45 2.28 16 14 C -0.15 -6.27 4.23 31.89 0.13 -6.14 16 15 C 0.20 10.17 0.96 -10.66 -0.01 10.16 16 16 O -0.58 -30.09 12.91 -148.98 -1.92 -32.01 16 17 C -0.54 -31.48 8.84 25.60 0.23 -31.25 16 18 H 0.03 2.14 7.59 -2.91 -0.02 2.12 16 19 C 0.03 1.44 5.36 84.65 0.45 1.89 16 20 N -0.93 -56.79 13.96 21.45 0.30 -56.49 16 21 Si 0.90 40.39 23.21 68.60 1.59 41.98 16 22 H -0.27 -11.64 7.03 99.48 0.70 -10.94 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.20 -7.84 4.42 99.48 0.44 -7.40 16 25 C 0.08 3.81 5.30 86.44 0.46 4.27 16 26 H 0.08 1.61 6.96 -2.39 -0.02 1.59 16 27 H 0.09 1.42 6.26 -2.39 -0.01 1.41 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.47 4.76 -2.38 -0.01 1.46 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.73 7.04 -2.39 -0.02 1.72 16 38 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.05 1.74 8.02 -2.39 -0.02 1.72 16 40 H 0.11 3.07 7.69 -2.39 -0.02 3.05 16 41 H 0.07 2.85 7.83 -2.39 -0.02 2.83 16 42 H 0.07 3.07 5.10 -2.39 -0.01 3.06 16 43 H 0.35 16.76 4.57 -74.05 -0.34 16.42 16 44 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.03 1.39 6.85 -2.39 -0.02 1.38 16 46 H 0.05 2.81 7.54 -2.39 -0.02 2.79 16 Total: -1.00 -76.65 336.32 -1.70 -78.35 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: 0.36 Total: 35.98 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 4.53 Total: -2.02 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -6.22 Total: -97.82 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -1.97 Total: -56.47 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.59 Total: 41.98 kcal Total: -76.65 -1.70 -78.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.423 kcal (2) G-P(sol) polarization free energy of solvation -76.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds