Wall clock time and date at job start Tue Mar 31 2020 03:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46895 * 109.47075 * 2 1 4 4 C 1.46845 * 111.00497 * 51.75535 * 3 2 1 5 5 C 1.53034 * 109.52688 * 185.84118 * 4 3 2 6 6 C 1.53123 * 109.27466 * 300.82195 * 5 4 3 7 7 C 1.53117 * 109.15238 * 57.66155 * 6 5 4 8 8 C 1.46843 * 110.99916 * 175.96874 * 3 2 1 9 9 H 1.08996 * 109.46720 * 294.16307 * 8 3 2 10 10 C 1.50705 * 109.46220 * 54.14304 * 8 3 2 11 11 O 1.21280 * 120.00088 * 29.06901 * 10 8 3 12 12 N 1.34784 * 119.99727 * 209.06658 * 10 8 3 13 13 C 1.47020 * 125.64722 * 354.85932 * 12 10 8 14 14 C 1.54430 * 107.27732 * 181.09287 * 13 12 10 15 15 C 1.55159 * 102.89478 * 22.19216 * 14 13 12 16 16 O 1.42896 * 111.00807 * 82.58700 * 15 14 13 17 17 C 1.50702 * 111.00162 * 206.40965 * 15 14 13 18 18 H 1.07992 * 120.00237 * 115.41671 * 17 15 14 19 19 C 1.37876 * 119.99543 * 295.41199 * 17 15 14 20 20 N 1.31520 * 120.00178 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 119.99947 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47044 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47295 * 120.00012 * 21 19 17 24 24 H 1.48504 * 109.47057 * 239.99730 * 21 19 17 25 25 C 1.47423 * 125.64442 * 174.90053 * 12 10 8 26 26 H 1.08996 * 109.47598 * 300.00340 * 1 2 3 27 27 H 1.08997 * 109.47494 * 60.00265 * 1 2 3 28 28 H 1.09005 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47039 * 239.99560 * 2 1 3 30 30 H 1.09002 * 109.46892 * 120.00100 * 2 1 3 31 31 H 1.09005 * 109.46268 * 305.86044 * 4 3 2 32 32 H 1.09000 * 109.45656 * 65.82324 * 4 3 2 33 33 H 1.08998 * 109.50204 * 60.75710 * 5 4 3 34 34 H 1.08997 * 109.50504 * 180.88300 * 5 4 3 35 35 H 1.09009 * 109.51877 * 177.55945 * 6 5 4 36 36 H 1.08997 * 109.52651 * 297.68534 * 6 5 4 37 37 H 1.09001 * 109.49514 * 182.39342 * 7 6 5 38 38 H 1.09004 * 109.51378 * 62.27315 * 7 6 5 39 39 H 1.08996 * 109.88298 * 300.51096 * 13 12 10 40 40 H 1.09000 * 109.88275 * 61.52742 * 13 12 10 41 41 H 1.08996 * 110.72703 * 263.84838 * 14 13 12 42 42 H 1.09007 * 110.75906 * 140.53994 * 14 13 12 43 43 H 0.96698 * 113.99784 * 64.58611 * 16 15 14 44 44 H 0.96997 * 119.99705 * 180.02562 * 20 19 17 45 45 H 1.08997 * 110.36918 * 36.99607 * 25 12 10 46 46 H 1.09004 * 110.45721 * 274.72061 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.3950 2.1641 1.0766 5 6 1.8154 3.6306 0.9569 6 6 3.3407 3.7284 1.0495 7 6 3.9669 2.8698 -0.0529 8 6 3.4843 1.4252 0.0964 9 1 3.7954 1.0368 1.0661 10 6 4.0830 0.5802 -0.9985 11 8 3.4908 0.4379 -2.0472 12 7 5.2767 -0.0173 -0.8122 13 6 6.1475 0.1550 0.3598 14 6 7.4125 -0.6979 0.1207 15 6 7.4369 -0.8560 -1.4226 16 8 8.0249 0.2877 -2.0456 17 6 8.1572 -2.1171 -1.8250 18 1 7.6199 -2.9102 -2.3235 19 6 9.5022 -2.2581 -1.5568 20 7 10.1567 -1.2920 -0.9502 21 14 10.3953 -3.8209 -2.0562 22 1 9.4412 -4.7462 -2.7186 23 1 11.4936 -3.4843 -2.9975 24 1 10.9612 -4.4750 -0.8490 25 6 5.9257 -0.9512 -1.7502 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.3105 2.0894 0.9968 32 1 1.7158 1.7719 2.0417 33 1 1.4829 4.0273 -0.0024 34 1 1.3642 4.2058 1.7654 35 1 3.6476 4.7665 0.9213 36 1 3.6703 3.3689 2.0242 37 1 5.0530 2.9015 0.0342 38 1 3.6681 3.2545 -1.0280 39 1 6.4226 1.2043 0.4662 40 1 5.6322 -0.1859 1.2578 41 1 7.3204 -1.6692 0.6065 42 1 8.3030 -0.1742 0.4687 43 1 8.9588 0.4163 -1.8300 44 1 11.1030 -1.3911 -0.7619 45 1 5.7407 -0.6446 -2.7797 46 1 5.5654 -1.9669 -1.5871 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:39 Heat of formation + Delta-G solvation = -83.652138 kcal Electronic energy + Delta-G solvation = -25719.204810 eV Core-core repulsion = 22222.372552 eV Total energy + Delta-G solvation = -3496.832258 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.24112 -38.42121 -36.90379 -34.52701 -34.13980 -32.20270 -31.46726 -29.67407 -29.61595 -28.29914 -25.60358 -24.62064 -23.72816 -22.08632 -21.32395 -20.10459 -19.61720 -18.68386 -17.28404 -16.80158 -16.08898 -15.17967 -15.03787 -14.98382 -14.86529 -14.42684 -14.32330 -14.01985 -13.57378 -13.39104 -13.17222 -13.13253 -12.72391 -12.18721 -12.03059 -11.79103 -11.74218 -11.70368 -11.40846 -11.37734 -11.27022 -11.13347 -10.91728 -10.85668 -10.66007 -10.58052 -10.47307 -10.32842 -10.05361 -9.43797 -9.15062 -8.70571 -8.26232 -8.22037 -7.96319 -6.31747 -4.39423 3.04519 3.16929 3.26164 3.29953 3.39286 3.97112 4.24756 4.68833 4.72937 4.84929 4.95300 5.06705 5.10440 5.16858 5.19124 5.33359 5.43364 5.47437 5.53128 5.54396 5.62633 5.71789 5.80094 5.81233 5.86167 5.88902 5.98073 6.01315 6.11005 6.14710 6.16634 6.26841 6.33130 6.42992 6.64962 6.85798 6.92324 7.05353 7.12293 7.27220 7.30810 7.71098 7.98610 8.14986 8.62735 8.70426 9.29294 9.41296 10.75939 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027340 B = 0.003907 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.880155 B = 7164.779949 C = 7694.891905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 N -0.516 5.516 4 C 0.051 3.949 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.106 4.106 8 C 0.077 3.923 9 H 0.056 0.944 10 C 0.528 3.472 11 O -0.535 6.535 12 N -0.608 5.608 13 C 0.100 3.900 14 C -0.137 4.137 15 C 0.249 3.751 16 O -0.582 6.582 17 C -0.535 4.535 18 H 0.065 0.935 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.903 3.097 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.120 3.880 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.026 0.974 31 H 0.083 0.917 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.383 0.617 44 H 0.268 0.732 45 H 0.071 0.929 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.608 6.645 8.196 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 N -0.242 5.242 4 C -0.076 4.076 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.144 4.144 8 C -0.035 4.035 9 H 0.074 0.926 10 C 0.315 3.685 11 O -0.412 6.412 12 N -0.341 5.341 13 C -0.023 4.023 14 C -0.176 4.176 15 C 0.208 3.792 16 O -0.392 6.392 17 C -0.573 4.573 18 H 0.084 0.916 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.002 4.002 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.233 0.767 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.563 6.918 7.003 16.759 hybrid contribution 1.514 -1.315 0.986 2.235 sum -12.049 5.602 7.989 15.505 Atomic orbital electron populations 1.21853 0.94916 1.01652 1.02156 1.22228 0.95882 0.88811 1.01522 1.61708 1.03884 1.12689 1.45875 1.22216 0.99798 0.93803 0.91827 1.21614 0.95883 0.95639 1.02431 1.21575 0.95525 1.00000 0.98489 1.21512 1.00313 0.92108 1.00515 1.21551 0.88662 0.96753 0.96503 0.92639 1.19938 0.80291 0.79794 0.88522 1.90650 1.61015 1.62086 1.27473 1.48637 1.18273 1.45234 1.21970 1.22192 0.92562 1.00429 0.87161 1.23208 0.94492 0.98607 1.01264 1.19591 0.87140 0.85352 0.87098 1.86128 1.30365 1.48434 1.74229 1.21511 0.94662 1.01761 1.39408 0.91634 1.24986 0.97310 0.96999 0.93674 1.69659 1.09916 1.32643 1.41395 0.86364 0.79567 0.82699 0.78359 1.19564 1.20734 1.20835 1.22361 0.93091 0.91302 0.93409 0.92784 0.91648 0.92318 0.89138 0.95575 0.89885 0.95178 0.90898 0.91597 0.91362 0.92142 0.90800 0.90320 0.92408 0.93220 0.91404 0.89672 0.76676 0.92213 0.91059 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.41 37.16 0.35 -1.27 16 2 C 0.04 0.60 5.30 -3.83 -0.02 0.58 16 3 N -0.52 -7.32 4.36 -228.08 -0.99 -8.31 16 4 C 0.05 0.56 5.03 -3.84 -0.02 0.54 16 5 C -0.12 -1.16 6.09 -26.65 -0.16 -1.32 16 6 C -0.12 -1.23 6.00 -26.61 -0.16 -1.39 16 7 C -0.11 -1.45 5.35 -26.65 -0.14 -1.59 16 8 C 0.08 1.17 1.77 -68.87 -0.12 1.05 16 9 H 0.06 0.80 7.17 -51.93 -0.37 0.43 16 10 C 0.53 10.18 6.00 -10.98 -0.07 10.11 16 11 O -0.54 -12.01 15.39 5.56 0.09 -11.93 16 12 N -0.61 -12.11 3.33 -170.45 -0.57 -12.68 16 13 C 0.10 1.79 6.24 -3.01 -0.02 1.77 16 14 C -0.14 -2.89 5.52 -24.84 -0.14 -3.03 16 15 C 0.25 5.95 0.88 -89.62 -0.08 5.87 16 16 O -0.58 -14.81 13.17 -35.23 -0.46 -15.27 16 17 C -0.54 -13.81 8.25 -34.44 -0.28 -14.09 16 18 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 19 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 20 N -0.90 -22.77 10.76 55.43 0.60 -22.18 16 21 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.12 2.69 6.11 -2.53 -0.02 2.68 16 26 H 0.05 0.50 6.19 -51.93 -0.32 0.18 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.53 6.11 -51.93 -0.32 1.21 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.81 5.84 -51.93 -0.30 0.50 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.02 7.48 -51.93 -0.39 0.63 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 0.98 7.48 -51.93 -0.39 0.60 16 40 H 0.05 0.78 7.74 -51.93 -0.40 0.37 16 41 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 42 H 0.08 1.88 7.69 -51.93 -0.40 1.48 16 43 H 0.38 9.73 7.25 45.56 0.33 10.06 16 44 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 45 H 0.07 1.72 7.99 -51.93 -0.41 1.30 16 46 H 0.07 1.52 8.03 -51.93 -0.42 1.10 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -28.28 351.45 -9.20 -37.48 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -7.16 Total: 10.96 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.97 Total: 1.67 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.97 Total: -43.17 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.38 Total: -27.20 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.28 -9.20 -37.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.172 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds