Wall clock time and date at job start Tue Mar 31 2020 03:14:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46906 * 109.47302 * 2 1
4 4 C 1.47008 * 110.99946 * 66.04129 * 3 2 1
5 5 C 1.53102 * 109.25734 * 182.39771 * 4 3 2
6 6 O 1.43015 * 109.25572 * 303.15170 * 5 4 3
7 7 C 1.43021 * 113.74036 * 58.67018 * 6 5 4
8 8 H 1.08993 * 109.50297 * 61.26152 * 7 6 5
9 9 C 1.50696 * 109.50802 * 181.39345 * 7 6 5
10 10 O 1.21285 * 120.00020 * 5.00562 * 9 7 6
11 11 N 1.34771 * 120.00006 * 185.00113 * 9 7 6
12 12 C 1.46925 * 120.63237 * 359.71957 * 11 9 7
13 13 C 1.53622 * 108.54401 * 126.36700 * 12 11 9
14 14 C 1.53042 * 109.23985 * 54.86216 * 13 12 11
15 15 C 1.53046 * 109.53480 * 298.50712 * 14 13 12
16 16 H 1.08993 * 109.49627 * 301.41222 * 15 14 13
17 17 C 1.50703 * 109.52091 * 181.33512 * 15 14 13
18 18 H 1.07997 * 119.99949 * 240.14966 * 17 15 14
19 19 C 1.37876 * 120.00185 * 60.14341 * 17 15 14
20 20 N 1.31512 * 120.00085 * 0.02562 * 19 17 15
21 21 Si 1.86796 * 120.00104 * 179.97438 * 19 17 15
22 22 H 1.48499 * 109.47105 * 90.00437 * 21 19 17
23 23 H 1.48496 * 109.47484 * 210.00457 * 21 19 17
24 24 H 1.48505 * 109.47101 * 330.00543 * 21 19 17
25 25 C 1.46934 * 120.63250 * 180.02562 * 11 9 7
26 26 C 1.47009 * 111.00265 * 189.68289 * 3 2 1
27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.46832 * 60.00356 * 1 2 3
29 29 H 1.09004 * 109.47261 * 300.00337 * 1 2 3
30 30 H 1.08998 * 109.47533 * 119.99464 * 2 1 3
31 31 H 1.08996 * 109.47853 * 239.99807 * 2 1 3
32 32 H 1.08998 * 109.50817 * 302.32881 * 4 3 2
33 33 H 1.09003 * 109.51048 * 62.46308 * 4 3 2
34 34 H 1.08992 * 109.51060 * 63.08449 * 5 4 3
35 35 H 1.09002 * 109.50401 * 183.22165 * 5 4 3
36 36 H 1.09001 * 109.58728 * 246.20364 * 12 11 9
37 37 H 1.09003 * 109.58362 * 6.62915 * 12 11 9
38 38 H 1.09000 * 109.63844 * 294.86859 * 13 12 11
39 39 H 1.09000 * 109.45875 * 174.73952 * 13 12 11
40 40 H 1.08997 * 109.45851 * 178.49035 * 14 13 12
41 41 H 1.08992 * 109.46218 * 58.52997 * 14 13 12
42 42 H 0.96999 * 120.00816 * 179.97438 * 20 19 17
43 43 H 1.08997 * 109.58331 * 353.36460 * 25 11 9
44 44 H 1.08995 * 109.58557 * 113.79723 * 25 11 9
45 45 H 1.09002 * 109.50267 * 297.53882 * 26 3 2
46 46 H 1.08999 * 109.51035 * 57.66210 * 26 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.6699 2.0675 1.2542
5 6 2.1452 3.5213 1.1875
6 8 3.5520 3.5463 0.9316
7 6 3.9282 2.8909 -0.2826
8 1 3.4548 3.3907 -1.1276
9 6 5.4259 2.9439 -0.4400
10 8 6.1127 3.4076 0.4456
11 7 6.0023 2.4759 -1.5648
12 6 5.1842 1.9056 -2.6437
13 6 5.5321 2.6274 -3.9544
14 6 7.0407 2.5365 -4.1951
15 6 7.7841 3.2305 -3.0514
16 1 7.4679 4.2718 -2.9910
17 6 9.2684 3.1695 -3.3052
18 1 9.9172 2.6744 -2.5980
19 6 9.7979 3.7456 -4.4405
20 7 9.0078 4.3487 -5.3016
21 14 11.6377 3.6705 -4.7547
22 1 11.9581 2.4441 -5.5283
23 1 12.0571 4.8670 -5.5278
24 1 12.3606 3.6407 -3.4578
25 6 7.4613 2.5202 -1.7326
26 6 3.4708 1.4308 -0.2308
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 0.5139 0.8900
30 1 1.8934 -0.5137 0.8900
31 1 1.8934 -0.5138 -0.8899
32 1 0.5889 2.0440 1.3921
33 1 2.1552 1.5639 2.0903
34 1 1.6201 4.0395 0.3852
35 1 1.9391 4.0155 2.1370
36 1 5.3986 0.8413 -2.7414
37 1 4.1278 2.0482 -2.4157
38 1 5.2371 3.6744 -3.8855
39 1 5.0027 2.1539 -4.7813
40 1 7.2881 3.0244 -5.1378
41 1 7.3390 1.4891 -4.2393
42 1 9.3803 4.7544 -6.1001
43 1 7.9080 3.0686 -0.9033
44 1 7.8572 1.5050 -1.7577
45 1 3.9849 0.9170 0.5815
46 1 3.7045 0.9424 -1.1768
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597909896.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:14:57
Heat of formation + Delta-G solvation = -72.590826 kcal
Electronic energy + Delta-G solvation = -25403.269726 eV
Core-core repulsion = 21906.917123 eV
Total energy + Delta-G solvation = -3496.352603 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.47803 -38.87574 -36.85678 -36.09755 -33.68153 -32.01316 -31.20902 -31.11120
-30.00980 -27.24921 -25.17028 -24.90921 -24.03004 -22.52415 -21.71924 -20.71541
-19.89700 -18.48736 -17.15605 -16.63994 -16.30125 -16.25149 -15.63871 -15.39742
-14.87451 -14.69103 -14.49175 -14.06348 -13.94043 -13.70365 -13.42363 -13.11151
-12.76963 -12.61668 -12.36695 -12.22806 -12.13580 -11.97969 -11.79160 -11.59071
-11.16014 -10.98335 -10.87148 -10.82438 -10.73662 -10.32551 -9.96030 -9.83947
-9.74483 -9.46658 -9.22117 -8.82790 -8.69987 -8.39230 -7.93161 -6.02210
-4.09289 2.90290 3.07175 3.29741 3.36879 3.41098 3.50249 4.02340
4.42711 4.54161 4.66469 4.68905 4.80471 4.88395 4.99811 5.07938
5.14904 5.20071 5.25470 5.30280 5.33146 5.41491 5.52783 5.59526
5.62076 5.63570 5.71851 5.79319 5.89085 6.06041 6.31495 6.36382
6.46007 6.61664 6.64175 6.66397 6.76349 6.89143 7.04194 7.16009
7.32166 7.68644 7.88555 7.97100 8.06748 8.36631 8.60587 8.94270
9.55637 11.03377
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.029570 B = 0.003534 C = 0.003337
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 946.682449 B = 7920.835330 C = 8387.875024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.049 3.951
3 N -0.535 5.535
4 C 0.013 3.987
5 C 0.062 3.938
6 O -0.355 6.355
7 C 0.080 3.920
8 H 0.091 0.909
9 C 0.516 3.484
10 O -0.528 6.528
11 N -0.599 5.599
12 C 0.101 3.899
13 C -0.134 4.134
14 C -0.112 4.112
15 C 0.040 3.960
16 H 0.030 0.970
17 C -0.514 4.514
18 H 0.057 0.943
19 C 0.063 3.937
20 N -0.889 5.889
21 Si 0.893 3.107
22 H -0.281 1.281
23 H -0.287 1.287
24 H -0.274 1.274
25 C 0.119 3.881
26 C 0.023 3.977
27 H 0.059 0.941
28 H 0.065 0.935
29 H 0.054 0.946
30 H 0.035 0.965
31 H 0.078 0.922
32 H 0.089 0.911
33 H 0.044 0.956
34 H 0.061 0.939
35 H 0.102 0.898
36 H 0.065 0.935
37 H 0.076 0.924
38 H 0.059 0.941
39 H 0.058 0.942
40 H 0.096 0.904
41 H 0.036 0.964
42 H 0.260 0.740
43 H 0.080 0.920
44 H 0.056 0.944
45 H 0.049 0.951
46 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.204 -8.030 7.420 21.235
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.078 4.078
3 N -0.261 5.261
4 C -0.115 4.115
5 C -0.016 4.016
6 O -0.273 6.273
7 C 0.018 3.982
8 H 0.108 0.892
9 C 0.301 3.699
10 O -0.404 6.404
11 N -0.333 5.333
12 C -0.022 4.022
13 C -0.173 4.173
14 C -0.150 4.150
15 C 0.021 3.979
16 H 0.048 0.952
17 C -0.553 4.553
18 H 0.075 0.925
19 C -0.138 4.138
20 N -0.527 5.527
21 Si 0.721 3.279
22 H -0.207 1.207
23 H -0.212 1.212
24 H -0.198 1.198
25 C -0.002 4.002
26 C -0.105 4.105
27 H 0.078 0.922
28 H 0.084 0.916
29 H 0.073 0.927
30 H 0.053 0.947
31 H 0.097 0.903
32 H 0.108 0.892
33 H 0.062 0.938
34 H 0.079 0.921
35 H 0.120 0.880
36 H 0.083 0.917
37 H 0.094 0.906
38 H 0.078 0.922
39 H 0.076 0.924
40 H 0.114 0.886
41 H 0.055 0.945
42 H 0.070 0.930
43 H 0.098 0.902
44 H 0.075 0.925
45 H 0.067 0.933
46 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -17.910 -7.345 7.477 20.752
hybrid contribution 1.069 -0.635 0.133 1.251
sum -16.841 -7.981 7.610 20.130
Atomic orbital electron populations
1.21796 0.94571 1.01681 1.02539 1.22112 0.96260 0.88274 1.01190
1.62275 1.12905 1.16410 1.34504 1.22887 1.01780 0.95992 0.90864
1.22731 0.81852 0.94908 1.02081 1.88142 1.22727 1.76535 1.39857
1.21940 0.93844 0.92984 0.89418 0.89153 1.19896 0.88531 0.78877
0.82549 1.90690 1.64149 1.44940 1.40612 1.48238 1.09172 1.59987
1.15912 1.22065 0.94184 0.97612 0.88342 1.22083 1.00502 0.99983
0.94700 1.21634 0.89878 0.99501 1.04029 1.18988 0.95382 0.95143
0.88416 0.95152 1.21071 0.91753 1.36066 1.06391 0.92456 1.24933
0.97886 0.94932 0.96056 1.69867 1.34553 1.36704 1.11620 0.86575
0.85547 0.77456 0.78323 1.20706 1.21248 1.19847 1.22043 0.75920
1.00729 1.01503 1.22889 0.88052 0.96405 1.03196 0.92160 0.91635
0.92718 0.94711 0.90344 0.89235 0.93793 0.92071 0.88023 0.91679
0.90614 0.92232 0.92368 0.88600 0.94546 0.92964 0.90203 0.92526
0.93317 0.88177
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.99 9.84 37.16 0.37 -0.62 16
2 C 0.05 0.41 5.68 -3.82 -0.02 0.39 16
3 N -0.54 -5.51 4.73 -234.31 -1.11 -6.62 16
4 C 0.01 0.12 5.43 -3.71 -0.02 0.10 16
5 C 0.06 0.67 7.01 37.21 0.26 0.93 16
6 O -0.36 -5.61 10.01 -55.06 -0.55 -6.17 16
7 C 0.08 1.20 2.38 -27.84 -0.07 1.13 16
8 H 0.09 1.27 7.44 -51.93 -0.39 0.88 16
9 C 0.52 9.86 7.12 -10.99 -0.08 9.79 16
10 O -0.53 -12.31 15.92 -14.27 -0.23 -12.53 16
11 N -0.60 -11.11 2.97 -172.48 -0.51 -11.62 16
12 C 0.10 1.52 5.07 -3.49 -0.02 1.50 16
13 C -0.13 -2.33 6.10 -26.39 -0.16 -2.49 16
14 C -0.11 -2.47 4.96 -26.69 -0.13 -2.61 16
15 C 0.04 0.97 2.25 -91.63 -0.21 0.77 16
16 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16
17 C -0.51 -13.88 8.56 -34.44 -0.29 -14.17 16
18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16
19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16
20 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16
21 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16
22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
25 C 0.12 2.57 5.66 -3.69 -0.02 2.55 16
26 C 0.02 0.28 4.50 -3.72 -0.02 0.26 16
27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.05 0.35 6.51 -51.93 -0.34 0.01 16
30 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16
31 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16
32 H 0.09 0.66 6.37 -51.93 -0.33 0.33 16
33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16
34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
35 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16
36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
37 H 0.08 0.94 4.61 -51.93 -0.24 0.70 16
38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
40 H 0.10 2.41 6.05 -51.93 -0.31 2.09 16
41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16
43 H 0.08 1.88 7.01 -51.93 -0.36 1.51 16
44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
46 H 0.10 1.11 5.39 -51.93 -0.28 0.83 16
LS Contribution 348.96 15.07 5.26 5.26
Total: -1.00 -31.32 348.96 -9.74 -41.06
By element:
Atomic # 1 Polarization: 7.35 SS G_CDS: -7.71 Total: -0.36 kcal
Atomic # 6 Polarization: -0.35 SS G_CDS: -0.50 Total: -0.86 kcal
Atomic # 7 Polarization: -41.47 SS G_CDS: -0.99 Total: -42.46 kcal
Atomic # 8 Polarization: -17.92 SS G_CDS: -0.78 Total: -18.70 kcal
Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -31.32 -9.74 -41.06 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597909896.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.532 kcal
(2) G-P(sol) polarization free energy of solvation -31.316 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.591 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds