Wall clock time and date at job start Tue Mar 31 2020 03:14:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46906 * 109.47302 * 2 1
4 4 C 1.47008 * 110.99946 * 66.04129 * 3 2 1
5 5 C 1.53102 * 109.25734 * 182.39771 * 4 3 2
6 6 O 1.43015 * 109.25572 * 303.15170 * 5 4 3
7 7 C 1.43021 * 113.74036 * 58.67018 * 6 5 4
8 8 H 1.08993 * 109.50297 * 61.26152 * 7 6 5
9 9 C 1.50696 * 109.50802 * 181.39345 * 7 6 5
10 10 O 1.21285 * 120.00020 * 5.00562 * 9 7 6
11 11 N 1.34771 * 120.00006 * 185.00113 * 9 7 6
12 12 C 1.46925 * 120.63237 * 359.71957 * 11 9 7
13 13 C 1.53622 * 108.54401 * 126.36700 * 12 11 9
14 14 C 1.53042 * 109.23985 * 54.86216 * 13 12 11
15 15 C 1.53046 * 109.53480 * 298.50712 * 14 13 12
16 16 H 1.08993 * 109.49627 * 301.41222 * 15 14 13
17 17 C 1.50703 * 109.52091 * 181.33512 * 15 14 13
18 18 H 1.07997 * 119.99949 * 240.14966 * 17 15 14
19 19 C 1.37876 * 120.00185 * 60.14341 * 17 15 14
20 20 N 1.31512 * 120.00085 * 0.02562 * 19 17 15
21 21 Si 1.86796 * 120.00104 * 179.97438 * 19 17 15
22 22 H 1.48499 * 109.47105 * 90.00437 * 21 19 17
23 23 H 1.48496 * 109.47484 * 210.00457 * 21 19 17
24 24 H 1.48505 * 109.47101 * 330.00543 * 21 19 17
25 25 C 1.46934 * 120.63250 * 180.02562 * 11 9 7
26 26 C 1.47009 * 111.00265 * 189.68289 * 3 2 1
27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.46832 * 60.00356 * 1 2 3
29 29 H 1.09004 * 109.47261 * 300.00337 * 1 2 3
30 30 H 1.08998 * 109.47533 * 119.99464 * 2 1 3
31 31 H 1.08996 * 109.47853 * 239.99807 * 2 1 3
32 32 H 1.08998 * 109.50817 * 302.32881 * 4 3 2
33 33 H 1.09003 * 109.51048 * 62.46308 * 4 3 2
34 34 H 1.08992 * 109.51060 * 63.08449 * 5 4 3
35 35 H 1.09002 * 109.50401 * 183.22165 * 5 4 3
36 36 H 1.09001 * 109.58728 * 246.20364 * 12 11 9
37 37 H 1.09003 * 109.58362 * 6.62915 * 12 11 9
38 38 H 1.09000 * 109.63844 * 294.86859 * 13 12 11
39 39 H 1.09000 * 109.45875 * 174.73952 * 13 12 11
40 40 H 1.08997 * 109.45851 * 178.49035 * 14 13 12
41 41 H 1.08992 * 109.46218 * 58.52997 * 14 13 12
42 42 H 0.96999 * 120.00816 * 179.97438 * 20 19 17
43 43 H 1.08997 * 109.58331 * 353.36460 * 25 11 9
44 44 H 1.08995 * 109.58557 * 113.79723 * 25 11 9
45 45 H 1.09002 * 109.50267 * 297.53882 * 26 3 2
46 46 H 1.08999 * 109.51035 * 57.66210 * 26 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.6699 2.0675 1.2542
5 6 2.1452 3.5213 1.1875
6 8 3.5520 3.5463 0.9316
7 6 3.9282 2.8909 -0.2826
8 1 3.4548 3.3907 -1.1276
9 6 5.4259 2.9439 -0.4400
10 8 6.1127 3.4076 0.4456
11 7 6.0023 2.4759 -1.5648
12 6 5.1842 1.9056 -2.6437
13 6 5.5321 2.6274 -3.9544
14 6 7.0407 2.5365 -4.1951
15 6 7.7841 3.2305 -3.0514
16 1 7.4679 4.2718 -2.9910
17 6 9.2684 3.1695 -3.3052
18 1 9.9172 2.6744 -2.5980
19 6 9.7979 3.7456 -4.4405
20 7 9.0078 4.3487 -5.3016
21 14 11.6377 3.6705 -4.7547
22 1 11.9581 2.4441 -5.5283
23 1 12.0571 4.8670 -5.5278
24 1 12.3606 3.6407 -3.4578
25 6 7.4613 2.5202 -1.7326
26 6 3.4708 1.4308 -0.2308
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 0.5139 0.8900
30 1 1.8934 -0.5137 0.8900
31 1 1.8934 -0.5138 -0.8899
32 1 0.5889 2.0440 1.3921
33 1 2.1552 1.5639 2.0903
34 1 1.6201 4.0395 0.3852
35 1 1.9391 4.0155 2.1370
36 1 5.3986 0.8413 -2.7414
37 1 4.1278 2.0482 -2.4157
38 1 5.2371 3.6744 -3.8855
39 1 5.0027 2.1539 -4.7813
40 1 7.2881 3.0244 -5.1378
41 1 7.3390 1.4891 -4.2393
42 1 9.3803 4.7544 -6.1001
43 1 7.9080 3.0686 -0.9033
44 1 7.8572 1.5050 -1.7577
45 1 3.9849 0.9170 0.5815
46 1 3.7045 0.9424 -1.1768
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597909896.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:14:56
Heat of formation + Delta-G solvation = -93.430882 kcal
Electronic energy + Delta-G solvation = -25404.173419 eV
Core-core repulsion = 21906.917123 eV
Total energy + Delta-G solvation = -3497.256296 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-41.73105 -40.10636 -38.39340 -37.10414 -35.49165 -33.48919 -32.66321 -31.82293
-31.58904 -28.32070 -26.95522 -26.25437 -25.14010 -23.48560 -23.27918 -21.68942
-21.33099 -20.01517 -18.65673 -18.16040 -17.75057 -17.24575 -16.81839 -16.48322
-16.35483 -16.12970 -15.46099 -15.35991 -15.13579 -15.04310 -14.73656 -14.57436
-14.28850 -13.96904 -13.74093 -13.58192 -13.05245 -12.86607 -12.83937 -12.72415
-12.67555 -12.60433 -12.43515 -11.94291 -11.84579 -11.80162 -11.73141 -11.57062
-11.25912 -10.88222 -10.76566 -10.64640 -10.41729 -9.55739 -9.49670 -8.10495
-6.25557 1.40876 1.42366 1.45721 1.52603 1.74544 2.43074 2.65438
2.89646 3.16155 3.48197 3.62286 3.84624 3.93914 4.00822 4.06542
4.19450 4.26308 4.29814 4.34838 4.45695 4.51319 4.52400 4.58601
4.64248 4.68458 4.73834 4.79213 4.84476 4.88760 4.96507 5.02820
5.11489 5.11966 5.25543 5.38927 5.45381 5.54017 5.61886 5.81976
5.93692 5.95157 6.00591 6.14939 6.34276 6.46028 6.83568 7.10688
7.42518 8.93273
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.029570 B = 0.003534 C = 0.003337
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 946.682449 B = 7920.835330 C = 8387.875024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.046 3.954
3 N -0.535 5.535
4 C 0.015 3.985
5 C 0.054 3.946
6 O -0.391 6.391
7 C 0.089 3.911
8 H 0.106 0.894
9 C 0.509 3.491
10 O -0.581 6.581
11 N -0.599 5.599
12 C 0.102 3.898
13 C -0.127 4.127
14 C -0.105 4.105
15 C 0.041 3.959
16 H -0.015 1.015
17 C -0.538 4.538
18 H 0.052 0.948
19 C 0.017 3.983
20 N -0.912 5.912
21 Si 0.955 3.045
22 H -0.270 1.270
23 H -0.284 1.284
24 H -0.273 1.273
25 C 0.131 3.869
26 C 0.032 3.968
27 H 0.072 0.928
28 H 0.063 0.937
29 H 0.057 0.943
30 H 0.033 0.967
31 H 0.086 0.914
32 H 0.116 0.884
33 H 0.035 0.965
34 H 0.072 0.928
35 H 0.119 0.881
36 H 0.092 0.908
37 H 0.111 0.889
38 H 0.044 0.956
39 H 0.094 0.906
40 H 0.063 0.937
41 H 0.041 0.959
42 H 0.262 0.738
43 H 0.050 0.950
44 H 0.068 0.932
45 H 0.033 0.967
46 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.456 -9.870 7.035 23.777
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.081 4.081
3 N -0.261 5.261
4 C -0.112 4.112
5 C -0.022 4.022
6 O -0.310 6.310
7 C 0.028 3.972
8 H 0.123 0.877
9 C 0.296 3.704
10 O -0.461 6.461
11 N -0.332 5.332
12 C -0.019 4.019
13 C -0.165 4.165
14 C -0.144 4.144
15 C 0.022 3.978
16 H 0.003 0.997
17 C -0.577 4.577
18 H 0.071 0.929
19 C -0.182 4.182
20 N -0.551 5.551
21 Si 0.781 3.219
22 H -0.195 1.195
23 H -0.210 1.210
24 H -0.198 1.198
25 C 0.009 3.991
26 C -0.097 4.097
27 H 0.091 0.909
28 H 0.082 0.918
29 H 0.076 0.924
30 H 0.051 0.949
31 H 0.104 0.896
32 H 0.134 0.866
33 H 0.053 0.947
34 H 0.090 0.910
35 H 0.137 0.863
36 H 0.110 0.890
37 H 0.129 0.871
38 H 0.062 0.938
39 H 0.112 0.888
40 H 0.081 0.919
41 H 0.060 0.940
42 H 0.071 0.929
43 H 0.069 0.931
44 H 0.086 0.914
45 H 0.052 0.948
46 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -20.204 -9.210 7.074 23.304
hybrid contribution 1.743 -0.015 0.284 1.767
sum -18.461 -9.225 7.358 21.910
Atomic orbital electron populations
1.21765 0.93134 1.02583 1.02599 1.22227 0.97369 0.86990 1.01506
1.62334 1.11158 1.17777 1.34815 1.22914 1.03203 0.94818 0.90313
1.23035 0.79471 0.96297 1.03363 1.88099 1.25774 1.77030 1.40098
1.21836 0.90304 0.95149 0.89948 0.87706 1.20758 0.90467 0.77435
0.81706 1.90655 1.65785 1.47185 1.42476 1.48277 1.08111 1.59824
1.16944 1.22338 0.95457 0.98415 0.85670 1.21995 0.97108 1.00010
0.97416 1.21425 0.93156 0.98727 1.01056 1.18893 0.94683 0.93235
0.91020 0.99660 1.21430 0.93320 1.36401 1.06533 0.92945 1.25679
1.02072 0.94592 0.95846 1.70003 1.36164 1.37101 1.11873 0.85602
0.80465 0.77758 0.78103 1.19521 1.20999 1.19806 1.21620 0.78407
1.00348 0.98763 1.22770 0.89396 0.93990 1.03506 0.90912 0.91815
0.92356 0.94911 0.89578 0.86565 0.94678 0.91015 0.86345 0.88981
0.87062 0.93757 0.88798 0.91882 0.94005 0.92918 0.93135 0.91355
0.94845 0.86574
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.40 9.84 71.98 0.71 -0.69 16
2 C 0.05 0.61 5.68 86.30 0.49 1.10 16
3 N -0.54 -9.36 4.73 -895.23 -4.23 -13.59 16
4 C 0.02 0.25 5.43 86.32 0.47 0.72 16
5 C 0.05 1.07 7.01 72.02 0.50 1.58 16
6 O -0.39 -12.14 10.01 -130.02 -1.30 -13.44 16
7 C 0.09 2.56 2.38 29.88 0.07 2.63 16
8 H 0.11 2.69 7.44 -2.39 -0.02 2.67 16
9 C 0.51 19.59 7.12 87.66 0.62 20.22 16
10 O -0.58 -28.26 15.92 15.91 0.25 -28.01 16
11 N -0.60 -22.03 2.97 -818.00 -2.43 -24.45 16
12 C 0.10 2.79 5.07 86.51 0.44 3.23 16
13 C -0.13 -4.19 6.10 30.82 0.19 -4.00 16
14 C -0.11 -4.66 4.96 30.62 0.15 -4.51 16
15 C 0.04 2.08 2.25 -11.45 -0.03 2.05 16
16 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16
17 C -0.54 -29.99 8.56 25.60 0.22 -29.78 16
18 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16
19 C 0.02 0.96 5.30 84.65 0.45 1.41 16
20 N -0.91 -52.28 11.32 21.45 0.24 -52.04 16
21 Si 0.96 43.80 29.54 68.60 2.03 45.83 16
22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16
23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16
24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16
25 C 0.13 5.83 5.66 86.37 0.49 6.32 16
26 C 0.03 0.70 4.50 86.31 0.39 1.09 16
27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16
28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
29 H 0.06 0.53 6.51 -2.38 -0.02 0.51 16
30 H 0.03 0.46 8.12 -2.39 -0.02 0.44 16
31 H 0.09 1.03 8.04 -2.39 -0.02 1.01 16
32 H 0.12 1.30 6.37 -2.39 -0.02 1.29 16
33 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16
34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
35 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16
36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16
37 H 0.11 2.31 4.61 -2.39 -0.01 2.30 16
38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16
39 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16
40 H 0.06 3.22 6.05 -2.39 -0.01 3.21 16
41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16
42 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16
43 H 0.05 2.52 7.01 -2.39 -0.02 2.50 16
44 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16
45 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16
46 H 0.12 2.13 5.39 -2.39 -0.01 2.12 16
Total: -1.00 -72.06 348.96 0.68 -71.38
By element:
Atomic # 1 Polarization: 12.00 SS G_CDS: 0.95 Total: 12.95 kcal
Atomic # 6 Polarization: -3.80 SS G_CDS: 5.17 Total: 1.37 kcal
Atomic # 7 Polarization: -83.66 SS G_CDS: -6.42 Total: -90.08 kcal
Atomic # 8 Polarization: -40.40 SS G_CDS: -1.05 Total: -41.44 kcal
Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal
Total: -72.06 0.68 -71.38 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597909896.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.054 kcal
(2) G-P(sol) polarization free energy of solvation -72.057 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.111 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.377 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.431 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.32 seconds