Wall clock time and date at job start Tue Mar 31 2020 03:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47506 * 2 1 4 4 O 1.42904 * 109.47103 * 239.99893 * 2 1 3 5 5 C 1.42899 * 113.99979 * 90.00367 * 4 2 1 6 6 C 1.52999 * 109.46921 * 180.02562 * 5 4 2 7 7 C 1.52999 * 117.49681 * 175.00368 * 6 5 4 8 8 C 1.52998 * 60.00525 * 107.48060 * 7 6 5 9 9 C 1.50704 * 109.47015 * 119.99957 * 2 1 3 10 10 O 1.21278 * 120.00192 * 120.00112 * 9 2 1 11 11 N 1.34775 * 119.99980 * 299.99800 * 9 2 1 12 12 C 1.46501 * 120.00021 * 179.97438 * 11 9 2 13 13 C 1.53038 * 109.46188 * 275.07042 * 12 11 9 14 14 C 1.53186 * 109.31227 * 178.61511 * 13 12 11 15 15 N 1.46931 * 108.77796 * 54.63554 * 14 13 12 16 16 C 1.36932 * 120.63008 * 126.41355 * 15 14 13 17 17 H 1.08002 * 120.00455 * 331.82745 * 16 15 14 18 18 C 1.38815 * 119.99674 * 151.83057 * 16 15 14 19 19 N 1.31614 * 120.00016 * 343.06397 * 18 16 15 20 20 Si 1.86800 * 119.99802 * 163.07075 * 18 16 15 21 21 H 1.48498 * 109.47213 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47379 * 119.99709 * 20 18 16 23 23 H 1.48506 * 109.46757 * 239.99965 * 20 18 16 24 24 C 1.46928 * 118.73517 * 306.39171 * 15 14 13 25 25 C 1.53043 * 109.45829 * 154.99864 * 12 11 9 26 26 H 1.08996 * 109.46780 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47063 * 300.00163 * 1 2 3 28 28 H 1.08999 * 109.46963 * 59.99954 * 1 2 3 29 29 H 1.08992 * 109.47309 * 59.99578 * 5 4 2 30 30 H 1.09003 * 109.46505 * 299.99729 * 5 4 2 31 31 H 1.08991 * 115.56758 * 29.30423 * 6 5 4 32 32 H 1.09002 * 117.50085 * 359.97438 * 7 6 5 33 33 H 1.09004 * 117.49447 * 214.97219 * 7 6 5 34 34 H 1.09001 * 117.49887 * 107.48085 * 8 7 6 35 35 H 1.08999 * 117.50023 * 252.48513 * 8 7 6 36 36 H 0.97001 * 120.00012 * 0.02562 * 11 9 2 37 37 H 1.08997 * 109.45717 * 35.03121 * 12 11 9 38 38 H 1.08998 * 109.49551 * 298.56613 * 13 12 11 39 39 H 1.09000 * 109.49775 * 58.65891 * 13 12 11 40 40 H 1.09002 * 109.58970 * 294.84595 * 14 13 12 41 41 H 1.09002 * 109.70584 * 174.49057 * 14 13 12 42 42 H 0.96998 * 120.00119 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.58611 * 293.81812 * 24 15 14 44 44 H 1.08999 * 109.70149 * 173.46348 * 24 15 14 45 45 H 1.08995 * 109.50338 * 301.34024 * 25 12 11 46 46 H 1.09008 * 109.49498 * 61.44030 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2002 0.1829 -2.2941 6 6 2.7080 -0.6409 -3.4791 7 6 2.8668 0.0760 -4.8214 8 6 4.1050 -0.3208 -4.0150 9 6 2.0324 -0.7104 1.2305 10 8 2.7296 -1.6965 1.1193 11 7 1.7068 -0.2499 2.4546 12 6 2.1946 -0.9409 3.6508 13 6 1.2506 -2.0957 3.9932 14 6 1.7825 -2.8369 5.2238 15 7 1.9724 -1.8695 6.3132 16 6 1.3993 -2.0780 7.5392 17 1 0.4846 -2.6468 7.6181 18 6 1.9940 -1.5582 8.6808 19 7 3.2491 -1.1633 8.6474 20 14 1.0130 -1.4193 10.2643 21 1 -0.3643 -1.9271 10.0396 22 1 1.6703 -2.2229 11.3260 23 1 0.9528 0.0034 10.6861 24 6 2.7894 -0.6744 6.0622 25 6 2.2463 0.0427 4.8222 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.9320 0.9512 -2.0450 30 1 1.2539 0.6546 -2.5588 31 1 2.3876 -1.6825 -3.4997 32 1 2.6092 1.1344 -4.8603 33 1 2.6508 -0.4941 -5.7251 34 1 4.7035 -1.1519 -4.3880 35 1 4.6624 0.4766 -3.5235 36 1 1.1488 0.5386 2.5436 37 1 3.1939 -1.3329 3.4615 38 1 0.2569 -1.7020 4.2069 39 1 1.1962 -2.7835 3.1494 40 1 2.7355 -3.3079 4.9831 41 1 1.0662 -3.5984 5.5322 42 1 3.6648 -0.8005 9.4451 43 1 3.8246 -0.9690 5.8898 44 1 2.7379 -0.0067 6.9222 45 1 2.9005 0.8767 4.5685 46 1 1.2431 0.4161 5.0281 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609330708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:29 Heat of formation + Delta-G solvation = -43.211523 kcal Electronic energy + Delta-G solvation = -24180.077064 eV Core-core repulsion = 20684.998444 eV Total energy + Delta-G solvation = -3495.078621 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.02720 -38.55672 -37.39311 -36.56233 -34.42415 -32.52530 -31.38749 -30.03850 -29.23103 -27.38099 -25.33034 -23.98976 -22.71727 -22.26829 -21.81622 -21.09693 -20.06947 -19.28849 -17.41104 -17.33971 -16.53809 -16.00658 -15.81178 -15.20630 -14.78436 -14.66072 -14.42089 -13.97312 -13.62402 -13.52752 -13.25907 -12.96600 -12.95439 -12.61316 -12.42093 -12.36098 -11.90810 -11.78127 -11.45971 -11.29291 -11.13121 -10.85117 -10.79575 -10.73635 -10.60803 -10.47189 -10.26403 -10.03296 -9.94815 -9.79067 -9.62320 -9.28426 -8.70832 -8.46222 -6.68420 -5.79785 -3.21941 2.72651 2.86247 3.36315 3.42904 3.44551 3.46845 3.77895 4.45423 4.49254 4.53408 4.60358 4.70957 4.74144 4.87011 4.98100 5.10653 5.27068 5.30565 5.31558 5.35064 5.40591 5.47495 5.51923 5.55955 5.60074 5.75990 5.85663 5.88341 5.88492 6.08026 6.27642 6.33744 6.52451 6.57448 6.59436 6.80364 6.84854 6.96444 7.00995 7.31318 7.59361 7.72535 7.80227 8.41218 8.44508 9.20598 9.83795 10.41033 11.29195 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.043504 B = 0.002548 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.463860 B =10987.409918 C =11105.411243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.084 0.916 4 O -0.353 6.353 5 C 0.091 3.909 6 C -0.152 4.152 7 C -0.175 4.175 8 C -0.176 4.176 9 C 0.510 3.490 10 O -0.520 6.520 11 N -0.722 5.722 12 C 0.152 3.848 13 C -0.139 4.139 14 C 0.147 3.853 15 N -0.593 5.593 16 C -0.250 4.250 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.174 3.826 25 C -0.146 4.146 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.395 0.605 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.056 0.944 42 H 0.253 0.747 43 H 0.021 0.979 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 7.469 -22.392 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.102 0.898 4 O -0.271 6.271 5 C 0.014 3.986 6 C -0.170 4.170 7 C -0.212 4.212 8 C -0.213 4.213 9 C 0.294 3.706 10 O -0.395 6.395 11 N -0.374 5.374 12 C 0.049 3.951 13 C -0.179 4.179 14 C 0.020 3.980 15 N -0.316 5.316 16 C -0.380 4.380 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.048 3.952 25 C -0.186 4.186 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.228 0.772 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.110 0.890 45 H 0.072 0.928 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.374 6.586 -22.334 23.528 hybrid contribution -0.762 0.820 0.844 1.402 sum -4.136 7.407 -21.489 23.103 Atomic orbital electron populations 1.22237 0.93662 1.03955 1.02932 1.21923 0.94985 0.96242 0.85940 0.89840 1.88055 1.86481 1.33855 1.18703 1.22101 0.99103 0.91988 0.85383 1.22107 1.00557 1.01139 0.93211 1.22980 1.02662 1.01033 0.94516 1.23075 0.90860 1.03644 1.03756 1.20290 0.80831 0.85163 0.84293 1.90725 1.36812 1.25497 1.86438 1.46290 1.53626 1.31902 1.05619 1.21056 0.98307 0.93135 0.82620 1.22368 0.99010 0.97394 0.99123 1.20879 0.97722 0.91787 0.87597 1.44105 1.59359 1.19459 1.08656 1.19233 1.03188 1.32464 0.83132 0.91592 1.25063 0.95108 1.02028 0.97570 1.70033 1.10018 1.46368 1.28361 0.86224 0.79610 0.77411 0.83547 1.20265 1.21727 1.21589 1.20740 0.92072 0.88824 0.93614 1.22536 1.01603 0.97593 0.96853 0.90960 0.90841 0.91447 0.93097 0.92794 0.86661 0.88719 0.88391 0.88502 0.88634 0.77190 0.90026 0.92315 0.92700 0.96163 0.92528 0.93655 0.96101 0.89016 0.92753 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.42 37.16 0.35 -1.14 16 2 C 0.07 0.79 3.14 -27.88 -0.09 0.70 16 3 H 0.08 0.72 7.79 -51.93 -0.40 0.32 16 4 O -0.35 -4.60 9.52 -55.14 -0.52 -5.12 16 5 C 0.09 0.85 6.03 37.16 0.22 1.07 16 6 C -0.15 -1.36 6.06 -90.61 -0.55 -1.91 16 7 C -0.17 -1.17 10.25 -26.73 -0.27 -1.44 16 8 C -0.18 -1.39 10.18 -26.73 -0.27 -1.67 16 9 C 0.51 7.76 7.20 -10.98 -0.08 7.68 16 10 O -0.52 -10.44 16.16 -14.35 -0.23 -10.67 16 11 N -0.72 -10.07 4.97 -53.77 -0.27 -10.34 16 12 C 0.15 2.66 2.42 -67.89 -0.16 2.50 16 13 C -0.14 -2.57 5.65 -26.62 -0.15 -2.72 16 14 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 15 N -0.59 -14.86 2.99 -172.32 -0.52 -15.37 16 16 C -0.25 -6.84 9.58 -15.06 -0.14 -6.99 16 17 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 18 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 19 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16 20 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 25 C -0.15 -2.64 5.55 -26.61 -0.15 -2.79 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.53 7.56 -51.93 -0.39 0.14 16 28 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 29 H 0.05 0.43 7.82 -51.93 -0.41 0.03 16 30 H 0.05 0.40 7.87 -51.93 -0.41 -0.01 16 31 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 36 H 0.39 4.23 8.02 -40.82 -0.33 3.91 16 37 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 2.38 6.07 -51.93 -0.31 2.07 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -32.76 370.25 -9.88 -42.63 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.08 Total: 1.79 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.42 Total: 0.47 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.16 Total: -51.16 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.76 Total: -15.79 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.76 -9.88 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609330708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.577 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds