Wall clock time and date at job start Tue Mar 31 2020 03:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47506 * 2 1 4 4 O 1.42904 * 109.47103 * 239.99893 * 2 1 3 5 5 C 1.42899 * 113.99979 * 90.00367 * 4 2 1 6 6 C 1.52999 * 109.46921 * 180.02562 * 5 4 2 7 7 C 1.52999 * 117.49681 * 175.00368 * 6 5 4 8 8 C 1.52998 * 60.00525 * 107.48060 * 7 6 5 9 9 C 1.50704 * 109.47015 * 119.99957 * 2 1 3 10 10 O 1.21278 * 120.00192 * 120.00112 * 9 2 1 11 11 N 1.34775 * 119.99980 * 299.99800 * 9 2 1 12 12 C 1.46501 * 120.00021 * 179.97438 * 11 9 2 13 13 C 1.53038 * 109.46188 * 275.07042 * 12 11 9 14 14 C 1.53186 * 109.31227 * 178.61511 * 13 12 11 15 15 N 1.46931 * 108.77796 * 54.63554 * 14 13 12 16 16 C 1.36932 * 120.63008 * 126.41355 * 15 14 13 17 17 H 1.08002 * 120.00455 * 331.82745 * 16 15 14 18 18 C 1.38815 * 119.99674 * 151.83057 * 16 15 14 19 19 N 1.31614 * 120.00016 * 343.06397 * 18 16 15 20 20 Si 1.86800 * 119.99802 * 163.07075 * 18 16 15 21 21 H 1.48498 * 109.47213 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47379 * 119.99709 * 20 18 16 23 23 H 1.48506 * 109.46757 * 239.99965 * 20 18 16 24 24 C 1.46928 * 118.73517 * 306.39171 * 15 14 13 25 25 C 1.53043 * 109.45829 * 154.99864 * 12 11 9 26 26 H 1.08996 * 109.46780 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47063 * 300.00163 * 1 2 3 28 28 H 1.08999 * 109.46963 * 59.99954 * 1 2 3 29 29 H 1.08992 * 109.47309 * 59.99578 * 5 4 2 30 30 H 1.09003 * 109.46505 * 299.99729 * 5 4 2 31 31 H 1.08991 * 115.56758 * 29.30423 * 6 5 4 32 32 H 1.09002 * 117.50085 * 359.97438 * 7 6 5 33 33 H 1.09004 * 117.49447 * 214.97219 * 7 6 5 34 34 H 1.09001 * 117.49887 * 107.48085 * 8 7 6 35 35 H 1.08999 * 117.50023 * 252.48513 * 8 7 6 36 36 H 0.97001 * 120.00012 * 0.02562 * 11 9 2 37 37 H 1.08997 * 109.45717 * 35.03121 * 12 11 9 38 38 H 1.08998 * 109.49551 * 298.56613 * 13 12 11 39 39 H 1.09000 * 109.49775 * 58.65891 * 13 12 11 40 40 H 1.09002 * 109.58970 * 294.84595 * 14 13 12 41 41 H 1.09002 * 109.70584 * 174.49057 * 14 13 12 42 42 H 0.96998 * 120.00119 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.58611 * 293.81812 * 24 15 14 44 44 H 1.08999 * 109.70149 * 173.46348 * 24 15 14 45 45 H 1.08995 * 109.50338 * 301.34024 * 25 12 11 46 46 H 1.09008 * 109.49498 * 61.44030 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2002 0.1829 -2.2941 6 6 2.7080 -0.6409 -3.4791 7 6 2.8668 0.0760 -4.8214 8 6 4.1050 -0.3208 -4.0150 9 6 2.0324 -0.7104 1.2305 10 8 2.7296 -1.6965 1.1193 11 7 1.7068 -0.2499 2.4546 12 6 2.1946 -0.9409 3.6508 13 6 1.2506 -2.0957 3.9932 14 6 1.7825 -2.8369 5.2238 15 7 1.9724 -1.8695 6.3132 16 6 1.3993 -2.0780 7.5392 17 1 0.4846 -2.6468 7.6181 18 6 1.9940 -1.5582 8.6808 19 7 3.2491 -1.1633 8.6474 20 14 1.0130 -1.4193 10.2643 21 1 -0.3643 -1.9271 10.0396 22 1 1.6703 -2.2229 11.3260 23 1 0.9528 0.0034 10.6861 24 6 2.7894 -0.6744 6.0622 25 6 2.2463 0.0427 4.8222 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.9320 0.9512 -2.0450 30 1 1.2539 0.6546 -2.5588 31 1 2.3876 -1.6825 -3.4997 32 1 2.6092 1.1344 -4.8603 33 1 2.6508 -0.4941 -5.7251 34 1 4.7035 -1.1519 -4.3880 35 1 4.6624 0.4766 -3.5235 36 1 1.1488 0.5386 2.5436 37 1 3.1939 -1.3329 3.4615 38 1 0.2569 -1.7020 4.2069 39 1 1.1962 -2.7835 3.1494 40 1 2.7355 -3.3079 4.9831 41 1 1.0662 -3.5984 5.5322 42 1 3.6648 -0.8005 9.4451 43 1 3.8246 -0.9690 5.8898 44 1 2.7379 -0.0067 6.9222 45 1 2.9005 0.8767 4.5685 46 1 1.2431 0.4161 5.0281 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609330708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:28 Heat of formation + Delta-G solvation = -63.447988 kcal Electronic energy + Delta-G solvation = -24180.954583 eV Core-core repulsion = 20684.998444 eV Total energy + Delta-G solvation = -3495.956140 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21360 -39.55380 -38.75851 -37.43227 -36.01625 -34.11734 -32.65922 -31.66724 -30.86154 -28.05827 -27.06885 -25.19905 -23.94830 -23.41516 -23.25196 -21.79820 -21.31897 -20.88480 -18.94762 -18.25901 -17.99610 -17.08575 -16.79928 -16.67432 -16.18416 -15.74566 -15.59730 -15.36874 -15.17186 -14.87045 -14.60609 -14.39478 -14.09814 -13.90647 -13.59489 -13.23849 -13.20396 -13.03038 -12.63888 -12.60728 -12.52485 -12.38050 -12.22730 -12.00950 -11.98974 -11.88309 -11.56487 -11.41034 -11.36123 -11.28308 -10.83127 -10.57398 -10.35233 -10.03659 -8.71924 -7.88392 -5.34423 1.47688 1.49587 1.58361 1.60534 1.84446 2.51661 2.70523 3.00974 3.27568 3.60338 3.68476 3.85061 3.89801 3.91727 3.96683 4.03159 4.09110 4.15491 4.31543 4.33976 4.45005 4.47658 4.63431 4.67976 4.72367 4.77123 4.80186 4.81562 4.84874 5.00600 5.01421 5.04020 5.14186 5.21431 5.21875 5.24586 5.28124 5.45924 5.52242 5.64279 5.70479 6.13266 6.38340 6.61529 7.13738 7.27393 7.82773 8.36160 9.18955 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.043504 B = 0.002548 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.463860 B =10987.409918 C =11105.411243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.076 3.924 3 H 0.117 0.883 4 O -0.388 6.388 5 C 0.088 3.912 6 C -0.175 4.175 7 C -0.152 4.152 8 C -0.187 4.187 9 C 0.506 3.494 10 O -0.577 6.577 11 N -0.705 5.705 12 C 0.162 3.838 13 C -0.123 4.123 14 C 0.144 3.856 15 N -0.609 5.609 16 C -0.262 4.262 17 H 0.068 0.932 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.266 1.266 22 H -0.295 1.295 23 H -0.287 1.287 24 C 0.177 3.823 25 C -0.127 4.127 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.416 0.584 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.004 0.996 41 H 0.058 0.942 42 H 0.251 0.749 43 H -0.008 1.008 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 9.614 -23.841 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 H 0.135 0.865 4 O -0.307 6.307 5 C 0.012 3.988 6 C -0.193 4.193 7 C -0.189 4.189 8 C -0.224 4.224 9 C 0.292 3.708 10 O -0.455 6.455 11 N -0.358 5.358 12 C 0.057 3.943 13 C -0.163 4.163 14 C 0.018 3.982 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.086 0.914 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.798 3.202 21 H -0.190 1.190 22 H -0.222 1.222 23 H -0.213 1.213 24 C 0.051 3.949 25 C -0.166 4.166 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.253 0.747 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.022 0.978 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.010 0.990 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.472 8.768 -23.815 25.961 hybrid contribution -0.057 0.082 1.247 1.251 sum -5.529 8.849 -22.569 24.864 Atomic orbital electron populations 1.22242 0.91435 1.03380 1.05152 1.22005 0.96417 0.96662 0.83453 0.86505 1.88023 1.86913 1.35879 1.19935 1.22290 1.00530 0.91703 0.84227 1.22147 1.01599 1.00763 0.94818 1.23072 1.00538 1.01800 0.93506 1.23161 0.90963 1.03886 1.04427 1.21163 0.79582 0.84483 0.85526 1.90705 1.39393 1.28197 1.87246 1.45963 1.53422 1.32136 1.04298 1.20647 0.96836 0.92923 0.83861 1.22156 0.99463 0.97450 0.97236 1.20962 0.97148 0.91860 0.88260 1.44365 1.59361 1.20669 1.08850 1.19552 1.03252 1.32169 0.84228 0.91443 1.25845 0.95953 1.02168 1.00681 1.70192 1.11538 1.47478 1.29022 0.85169 0.78552 0.77154 0.79312 1.19033 1.22225 1.21301 1.20578 0.90899 0.88342 0.95066 1.22250 1.02509 0.97559 0.94318 0.92924 0.88832 0.89020 0.92243 0.90492 0.88464 0.87043 0.87457 0.88703 0.88330 0.74691 0.92895 0.91058 0.92631 0.97823 0.92352 0.93997 0.98978 0.91684 0.90311 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.42 71.98 0.68 -1.64 16 2 C 0.08 1.50 3.14 29.85 0.09 1.59 16 3 H 0.12 1.54 7.79 -2.39 -0.02 1.52 16 4 O -0.39 -9.63 9.52 -129.94 -1.24 -10.86 16 5 C 0.09 1.46 6.03 71.98 0.43 1.89 16 6 C -0.17 -2.96 6.06 -10.79 -0.07 -3.03 16 7 C -0.15 -1.70 10.25 30.59 0.31 -1.39 16 8 C -0.19 -2.78 10.18 30.60 0.31 -2.47 16 9 C 0.51 14.73 7.20 87.66 0.63 15.36 16 10 O -0.58 -23.47 16.16 16.01 0.26 -23.21 16 11 N -0.71 -18.11 4.97 -442.41 -2.20 -20.31 16 12 C 0.16 5.55 2.42 45.02 0.11 5.66 16 13 C -0.12 -4.47 5.65 30.67 0.17 -4.29 16 14 C 0.14 6.37 6.52 86.36 0.56 6.93 16 15 N -0.61 -30.96 2.99 -699.09 -2.09 -33.05 16 16 C -0.26 -14.41 9.58 84.03 0.81 -13.60 16 17 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 18 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 19 N -0.94 -55.31 11.19 21.65 0.24 -55.06 16 20 Si 0.97 44.43 29.59 68.60 2.03 46.46 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 24 C 0.18 8.48 5.30 86.36 0.46 8.94 16 25 C -0.13 -4.43 5.55 30.67 0.17 -4.26 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 0.93 7.56 -2.39 -0.02 0.92 16 28 H 0.09 0.88 7.87 -2.39 -0.02 0.86 16 29 H 0.06 0.86 7.82 -2.39 -0.02 0.84 16 30 H 0.08 0.88 7.87 -2.39 -0.02 0.86 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.10 1.37 8.03 -2.39 -0.02 1.35 16 36 H 0.42 7.33 8.02 -92.71 -0.74 6.59 16 37 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 38 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 42 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 43 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 45 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -73.95 370.25 2.30 -71.65 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.21 Total: 17.13 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.09 Total: 7.26 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -4.05 Total: -108.42 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.98 Total: -34.08 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -73.95 2.30 -71.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609330708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.202 kcal (2) G-P(sol) polarization free energy of solvation -73.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds