Wall clock time and date at job start Tue Mar 31 2020 03:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42894 * 109.46950 * 2 1 4 4 C 1.42897 * 114.00193 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47340 * 180.02562 * 4 3 2 6 6 C 1.50701 * 115.54954 * 296.02896 * 5 4 3 7 7 O 1.21280 * 120.00203 * 114.35758 * 6 5 4 8 8 N 1.34780 * 119.99552 * 294.08082 * 6 5 4 9 9 C 1.46507 * 119.99680 * 175.15146 * 8 6 5 10 10 C 1.53045 * 109.45831 * 275.02869 * 9 8 6 11 11 C 1.53189 * 109.30845 * 178.60252 * 10 9 8 12 12 N 1.46922 * 108.76914 * 54.65353 * 11 10 9 13 13 C 1.36940 * 120.62867 * 126.35902 * 12 11 10 14 14 H 1.07995 * 119.99753 * 208.35532 * 13 12 11 15 15 C 1.38806 * 120.00155 * 28.36238 * 13 12 11 16 16 N 1.31623 * 119.99980 * 17.62589 * 15 13 12 17 17 Si 1.86794 * 120.00060 * 197.62602 * 15 13 12 18 18 H 1.48498 * 109.47338 * 94.94432 * 17 15 13 19 19 H 1.48506 * 109.47241 * 214.94577 * 17 15 13 20 20 H 1.48496 * 109.47223 * 334.94082 * 17 15 13 21 21 C 1.46924 * 118.73742 * 306.38447 * 12 11 10 22 22 C 1.53033 * 109.46051 * 154.97356 * 9 8 6 23 23 C 1.52995 * 117.49914 * 81.69968 * 5 4 3 24 24 C 1.53005 * 117.49737 * 150.36231 * 5 4 3 25 25 H 1.08997 * 109.46873 * 299.99690 * 1 2 3 26 26 H 1.08996 * 109.47107 * 60.00119 * 1 2 3 27 27 H 1.09004 * 109.46547 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47158 * 239.99879 * 2 1 3 29 29 H 1.08996 * 109.46592 * 119.99986 * 2 1 3 30 30 H 1.08999 * 109.47208 * 59.99630 * 4 3 2 31 31 H 1.09007 * 109.47181 * 300.00207 * 4 3 2 32 32 H 0.97003 * 120.00339 * 355.15404 * 8 6 5 33 33 H 1.08999 * 109.45477 * 34.99810 * 9 8 6 34 34 H 1.08996 * 109.49548 * 298.56505 * 10 9 8 35 35 H 1.09003 * 109.49593 * 58.66290 * 10 9 8 36 36 H 1.09004 * 109.59954 * 294.86248 * 11 10 9 37 37 H 1.09003 * 109.70122 * 174.51071 * 11 10 9 38 38 H 0.97002 * 120.00063 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.58730 * 293.81560 * 21 12 11 40 40 H 1.09006 * 109.70348 * 173.46659 * 21 12 11 41 41 H 1.09005 * 109.49998 * 301.33892 * 22 9 8 42 42 H 1.08997 * 109.49790 * 61.43303 * 22 9 8 43 43 H 1.08998 * 117.49760 * 215.00125 * 23 5 4 44 44 H 1.09006 * 117.50320 * 0.02562 * 23 5 4 45 45 H 1.09000 * 117.50119 * 359.96848 * 24 5 4 46 46 H 1.08994 * 117.49960 * 144.97500 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 3.4159 3.7210 -1.2210 7 8 2.6007 4.6136 -1.1240 8 7 3.9599 3.4324 -2.4199 9 6 3.4856 4.1195 -3.6238 10 6 2.2536 3.3956 -4.1720 11 6 1.7399 4.1368 -5.4103 12 7 2.8413 4.2672 -6.3739 13 6 2.6929 3.8373 -7.6656 14 1 3.5537 3.5040 -8.2260 15 6 1.4360 3.8300 -8.2546 16 7 0.4592 4.5392 -7.7298 17 14 1.1308 2.8138 -9.7919 18 1 0.5702 1.4930 -9.4090 19 1 0.1679 3.5239 -10.6717 20 1 2.4114 2.6166 -10.5172 21 6 4.1052 4.8672 -5.9252 22 6 4.5922 4.1181 -4.6809 23 6 3.8188 3.6707 1.3434 24 6 5.1475 3.3164 0.6709 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9767 -0.8908 31 1 3.8341 0.9764 0.8892 32 1 4.6653 2.7699 -2.4856 33 1 3.2221 5.1475 -3.3752 34 1 2.5225 2.3750 -4.4441 35 1 1.4741 3.3763 -3.4103 36 1 1.3863 5.1271 -5.1233 37 1 0.9232 3.5743 -5.8628 38 1 -0.4191 4.5345 -8.1416 39 1 3.9445 5.9171 -5.6801 40 1 4.8514 4.7866 -6.7157 41 1 5.4775 4.6130 -4.2815 42 1 4.8388 3.0906 -4.9482 43 1 3.5184 4.7184 1.3440 44 1 3.5339 3.0992 2.2269 45 1 5.7361 2.5121 1.1121 46 1 5.7214 4.1309 0.2288 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619652436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:19 Heat of formation + Delta-G solvation = -43.933301 kcal Electronic energy + Delta-G solvation = -24917.018162 eV Core-core repulsion = 21421.908242 eV Total energy + Delta-G solvation = -3495.109919 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.16751 -38.29093 -37.38735 -36.21362 -34.33424 -32.06859 -31.45794 -30.02884 -29.47870 -27.25512 -25.20297 -23.36266 -22.98693 -22.56598 -22.19558 -21.35681 -19.72996 -18.92009 -17.38266 -16.77910 -16.51133 -16.12297 -15.72463 -15.42861 -14.83833 -14.44614 -14.10318 -13.79736 -13.49191 -13.47705 -13.39382 -12.98712 -12.72411 -12.50269 -12.36995 -12.18909 -11.76779 -11.65687 -11.46043 -11.35997 -11.12041 -10.89258 -10.80112 -10.72965 -10.46259 -10.32804 -10.19547 -10.03687 -9.78058 -9.72381 -9.67838 -9.35011 -8.63916 -8.38810 -6.65942 -5.76392 -3.19521 2.77313 3.12578 3.37396 3.40847 3.45888 3.47533 3.81124 4.43647 4.51218 4.64837 4.66260 4.85878 4.89792 5.01229 5.17996 5.20211 5.31342 5.33895 5.34982 5.42482 5.48827 5.54378 5.63193 5.67827 5.70073 5.78272 5.87175 5.92780 6.02697 6.12178 6.27362 6.41336 6.48456 6.65387 6.68261 6.82255 6.95786 7.00180 7.04164 7.40491 7.70148 7.81469 7.81966 8.47221 8.51800 9.23121 9.86571 10.43807 11.32173 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.003923 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.727179 B = 7136.344706 C = 8184.636946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.377 6.377 4 C 0.108 3.892 5 C -0.161 4.161 6 C 0.554 3.446 7 O -0.532 6.532 8 N -0.721 5.721 9 C 0.151 3.849 10 C -0.145 4.145 11 C 0.174 3.826 12 N -0.592 5.592 13 C -0.256 4.256 14 H 0.066 0.934 15 C 0.004 3.996 16 N -0.900 5.900 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.149 3.851 22 C -0.138 4.138 23 C -0.136 4.136 24 C -0.153 4.153 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.393 0.607 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.020 0.980 37 H 0.088 0.912 38 H 0.254 0.746 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.835 -8.356 18.055 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.297 6.297 4 C 0.031 3.969 5 C -0.164 4.164 6 C 0.339 3.661 7 O -0.407 6.407 8 N -0.371 5.371 9 C 0.048 3.952 10 C -0.185 4.185 11 C 0.048 3.952 12 N -0.315 5.315 13 C -0.385 4.385 14 H 0.084 0.916 15 C -0.195 4.195 16 N -0.544 5.544 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.022 3.978 22 C -0.178 4.178 23 C -0.173 4.173 24 C -0.190 4.190 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.226 0.774 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.924 -7.515 18.016 21.067 hybrid contribution 0.229 -1.206 -0.830 1.482 sum 8.153 -8.721 17.185 20.925 Atomic orbital electron populations 1.21738 0.93549 1.02122 1.03517 1.22463 0.95938 0.83660 0.99803 1.88018 1.20077 1.26274 1.95308 1.21786 0.82416 0.92159 1.00528 1.21398 1.04248 0.95806 0.94978 1.19207 0.80888 0.82835 0.83195 1.90697 1.33250 1.31208 1.85583 1.46233 1.40141 1.43575 1.07138 1.21040 0.94892 0.96876 0.82431 1.22543 0.96417 0.99929 0.99600 1.20743 0.91247 0.97121 0.86109 1.44098 1.09994 1.69598 1.07816 1.19190 0.93915 1.36228 0.89179 0.91648 1.25060 0.97572 0.98942 0.97956 1.70052 1.02617 1.39968 1.41757 0.86285 0.77750 0.80026 0.82770 1.21514 1.21772 1.20386 1.20831 0.89815 0.94086 0.93117 1.22326 0.96524 1.01793 0.97142 1.22952 0.98733 1.02004 0.93653 1.23102 0.89843 1.03614 1.02480 0.91894 0.91447 0.91164 0.93326 0.93652 0.92559 0.92555 0.77378 0.90052 0.92792 0.92876 0.96148 0.89416 0.93598 0.96228 0.92374 0.92686 0.91931 0.87591 0.87929 0.87803 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 2 C 0.06 0.59 6.66 37.16 0.25 0.84 16 3 O -0.38 -5.07 10.25 -35.23 -0.36 -5.43 16 4 C 0.11 1.15 5.76 37.16 0.21 1.36 16 5 C -0.16 -1.90 2.17 -155.66 -0.34 -2.24 16 6 C 0.55 8.90 6.96 -10.98 -0.08 8.83 16 7 O -0.53 -10.97 16.33 5.56 0.09 -10.88 16 8 N -0.72 -10.75 5.07 -53.76 -0.27 -11.02 16 9 C 0.15 2.74 2.46 -67.89 -0.17 2.57 16 10 C -0.14 -3.01 5.65 -26.61 -0.15 -3.16 16 11 C 0.17 4.35 5.31 -3.71 -0.02 4.33 16 12 N -0.59 -15.02 2.99 -172.33 -0.52 -15.54 16 13 C -0.26 -7.05 9.58 -15.06 -0.14 -7.20 16 14 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 15 C 0.00 0.10 4.89 -17.43 -0.09 0.02 16 16 N -0.90 -26.62 11.25 55.49 0.62 -26.00 16 17 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.15 3.11 6.51 -3.71 -0.02 3.09 16 22 C -0.14 -2.34 5.55 -26.62 -0.15 -2.49 16 23 C -0.14 -1.42 9.78 -26.69 -0.26 -1.69 16 24 C -0.15 -1.30 9.93 -26.69 -0.27 -1.56 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.39 4.67 8.61 -40.82 -0.35 4.31 16 33 H 0.08 1.67 7.51 -51.93 -0.39 1.28 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 2.44 6.09 -51.93 -0.32 2.12 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.11 1.26 8.00 -51.93 -0.42 0.84 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -33.38 372.88 -8.88 -42.26 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.20 Total: 2.63 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.83 Total: 1.58 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.16 Total: -52.56 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.27 Total: -16.32 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.38 -8.88 -42.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619652436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.674 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds