Wall clock time and date at job start Tue Mar 31 2020 03:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42894 * 109.46950 * 2 1 4 4 C 1.42897 * 114.00193 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47340 * 180.02562 * 4 3 2 6 6 C 1.50701 * 115.54954 * 296.02896 * 5 4 3 7 7 O 1.21280 * 120.00203 * 114.35758 * 6 5 4 8 8 N 1.34780 * 119.99552 * 294.08082 * 6 5 4 9 9 C 1.46507 * 119.99680 * 175.15146 * 8 6 5 10 10 C 1.53045 * 109.45831 * 275.02869 * 9 8 6 11 11 C 1.53189 * 109.30845 * 178.60252 * 10 9 8 12 12 N 1.46922 * 108.76914 * 54.65353 * 11 10 9 13 13 C 1.36940 * 120.62867 * 126.35902 * 12 11 10 14 14 H 1.07995 * 119.99753 * 208.35532 * 13 12 11 15 15 C 1.38806 * 120.00155 * 28.36238 * 13 12 11 16 16 N 1.31623 * 119.99980 * 17.62589 * 15 13 12 17 17 Si 1.86794 * 120.00060 * 197.62602 * 15 13 12 18 18 H 1.48498 * 109.47338 * 94.94432 * 17 15 13 19 19 H 1.48506 * 109.47241 * 214.94577 * 17 15 13 20 20 H 1.48496 * 109.47223 * 334.94082 * 17 15 13 21 21 C 1.46924 * 118.73742 * 306.38447 * 12 11 10 22 22 C 1.53033 * 109.46051 * 154.97356 * 9 8 6 23 23 C 1.52995 * 117.49914 * 81.69968 * 5 4 3 24 24 C 1.53005 * 117.49737 * 150.36231 * 5 4 3 25 25 H 1.08997 * 109.46873 * 299.99690 * 1 2 3 26 26 H 1.08996 * 109.47107 * 60.00119 * 1 2 3 27 27 H 1.09004 * 109.46547 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47158 * 239.99879 * 2 1 3 29 29 H 1.08996 * 109.46592 * 119.99986 * 2 1 3 30 30 H 1.08999 * 109.47208 * 59.99630 * 4 3 2 31 31 H 1.09007 * 109.47181 * 300.00207 * 4 3 2 32 32 H 0.97003 * 120.00339 * 355.15404 * 8 6 5 33 33 H 1.08999 * 109.45477 * 34.99810 * 9 8 6 34 34 H 1.08996 * 109.49548 * 298.56505 * 10 9 8 35 35 H 1.09003 * 109.49593 * 58.66290 * 10 9 8 36 36 H 1.09004 * 109.59954 * 294.86248 * 11 10 9 37 37 H 1.09003 * 109.70122 * 174.51071 * 11 10 9 38 38 H 0.97002 * 120.00063 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.58730 * 293.81560 * 21 12 11 40 40 H 1.09006 * 109.70348 * 173.46659 * 21 12 11 41 41 H 1.09005 * 109.49998 * 301.33892 * 22 9 8 42 42 H 1.08997 * 109.49790 * 61.43303 * 22 9 8 43 43 H 1.08998 * 117.49760 * 215.00125 * 23 5 4 44 44 H 1.09006 * 117.50320 * 0.02562 * 23 5 4 45 45 H 1.09000 * 117.50119 * 359.96848 * 24 5 4 46 46 H 1.08994 * 117.49960 * 144.97500 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 3.4159 3.7210 -1.2210 7 8 2.6007 4.6136 -1.1240 8 7 3.9599 3.4324 -2.4199 9 6 3.4856 4.1195 -3.6238 10 6 2.2536 3.3956 -4.1720 11 6 1.7399 4.1368 -5.4103 12 7 2.8413 4.2672 -6.3739 13 6 2.6929 3.8373 -7.6656 14 1 3.5537 3.5040 -8.2260 15 6 1.4360 3.8300 -8.2546 16 7 0.4592 4.5392 -7.7298 17 14 1.1308 2.8138 -9.7919 18 1 0.5702 1.4930 -9.4090 19 1 0.1679 3.5239 -10.6717 20 1 2.4114 2.6166 -10.5172 21 6 4.1052 4.8672 -5.9252 22 6 4.5922 4.1181 -4.6809 23 6 3.8188 3.6707 1.3434 24 6 5.1475 3.3164 0.6709 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9767 -0.8908 31 1 3.8341 0.9764 0.8892 32 1 4.6653 2.7699 -2.4856 33 1 3.2221 5.1475 -3.3752 34 1 2.5225 2.3750 -4.4441 35 1 1.4741 3.3763 -3.4103 36 1 1.3863 5.1271 -5.1233 37 1 0.9232 3.5743 -5.8628 38 1 -0.4191 4.5345 -8.1416 39 1 3.9445 5.9171 -5.6801 40 1 4.8514 4.7866 -6.7157 41 1 5.4775 4.6130 -4.2815 42 1 4.8388 3.0906 -4.9482 43 1 3.5184 4.7184 1.3440 44 1 3.5339 3.0992 2.2269 45 1 5.7361 2.5121 1.1121 46 1 5.7214 4.1309 0.2288 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619652436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:18 Heat of formation + Delta-G solvation = -66.558073 kcal Electronic energy + Delta-G solvation = -24917.999245 eV Core-core repulsion = 21421.908242 eV Total energy + Delta-G solvation = -3496.091003 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34945 -39.49899 -38.72336 -37.25001 -36.00600 -33.90147 -32.23883 -31.81157 -31.25924 -28.14482 -27.00605 -24.78665 -23.94264 -23.77800 -23.29360 -22.90668 -21.26131 -20.30979 -18.82632 -18.22890 -17.46616 -17.20530 -16.98647 -16.69131 -16.39508 -15.76644 -15.54449 -15.38632 -15.11606 -14.82613 -14.42579 -14.30057 -14.24510 -14.06901 -13.43729 -13.22348 -13.10392 -13.06481 -12.66314 -12.62560 -12.47328 -12.41718 -12.16164 -12.14857 -12.03841 -11.89177 -11.61809 -11.56072 -11.43329 -11.17022 -10.78672 -10.60127 -10.49631 -10.01268 -8.73798 -7.88970 -5.35909 1.46894 1.48173 1.57992 1.58690 2.13615 2.38236 2.50672 3.03915 3.26825 3.59407 3.64403 3.72985 3.86718 3.88456 4.01152 4.10785 4.15092 4.28220 4.30245 4.43729 4.45511 4.48273 4.58744 4.62969 4.72542 4.76861 4.77948 4.82577 4.88493 4.97594 5.00313 5.02948 5.05120 5.10532 5.19794 5.23141 5.28144 5.41968 5.54587 5.61885 5.65882 6.28843 6.36692 6.61476 7.11086 7.30450 7.81869 8.35614 9.18432 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.003923 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.727179 B = 7136.344706 C = 8184.636946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.053 3.947 3 O -0.417 6.417 4 C 0.106 3.894 5 C -0.179 4.179 6 C 0.548 3.452 7 O -0.588 6.588 8 N -0.706 5.706 9 C 0.161 3.839 10 C -0.126 4.126 11 C 0.184 3.816 12 N -0.608 5.608 13 C -0.264 4.264 14 H 0.076 0.924 15 C -0.053 4.053 16 N -0.939 5.939 17 Si 0.970 3.030 18 H -0.287 1.287 19 H -0.297 1.297 20 H -0.262 1.262 21 C 0.141 3.859 22 C -0.119 4.119 23 C -0.148 4.148 24 C -0.115 4.115 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.414 0.586 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.036 0.964 36 H -0.013 1.013 37 H 0.054 0.946 38 H 0.249 0.751 39 H 0.010 0.990 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.143 0.857 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.053 -10.813 19.181 25.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 O -0.337 6.337 4 C 0.029 3.971 5 C -0.183 4.183 6 C 0.336 3.664 7 O -0.468 6.468 8 N -0.356 5.356 9 C 0.056 3.944 10 C -0.167 4.167 11 C 0.058 3.942 12 N -0.332 5.332 13 C -0.394 4.394 14 H 0.093 0.907 15 C -0.248 4.248 16 N -0.585 5.585 17 Si 0.798 3.202 18 H -0.214 1.214 19 H -0.224 1.224 20 H -0.186 1.186 21 C 0.015 3.985 22 C -0.159 4.159 23 C -0.185 4.185 24 C -0.152 4.152 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.250 0.750 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.005 0.995 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.140 0.860 45 H 0.161 0.839 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.219 -10.008 19.155 24.350 hybrid contribution -0.775 -0.370 -1.147 1.433 sum 10.443 -10.378 18.008 23.260 Atomic orbital electron populations 1.21782 0.94059 1.03227 1.02007 1.22619 0.95671 0.82751 1.01211 1.87984 1.21991 1.28119 1.95624 1.21989 0.81263 0.91223 1.02583 1.21385 1.07607 0.96176 0.93108 1.20062 0.79675 0.82204 0.84501 1.90674 1.35714 1.33892 1.86525 1.45951 1.40321 1.43517 1.05847 1.20655 0.94358 0.95236 0.84127 1.22263 0.97353 0.99892 0.97154 1.20427 0.90941 0.95236 0.87623 1.44335 1.11215 1.70231 1.07407 1.19605 0.94244 1.35517 0.89985 0.90681 1.25897 0.97468 1.00177 1.01303 1.70229 1.02846 1.41878 1.43567 0.85207 0.77897 0.78020 0.79078 1.21378 1.22417 1.18606 1.21048 0.88191 0.93916 0.95329 1.22124 0.96803 1.02417 0.94533 1.23023 1.00890 1.00843 0.93744 1.23278 0.88441 1.04065 0.99443 0.92228 0.94095 0.88770 0.92969 0.90980 0.91680 0.89097 0.74975 0.92906 0.92007 0.94497 0.99541 0.92796 0.94185 0.97232 0.91133 0.88912 0.90473 0.90063 0.86009 0.83945 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 10.28 71.99 0.74 -2.23 16 2 C 0.05 1.00 6.66 71.99 0.48 1.48 16 3 O -0.42 -10.69 10.25 -148.98 -1.53 -12.22 16 4 C 0.11 1.92 5.76 71.98 0.41 2.34 16 5 C -0.18 -3.85 2.17 -52.93 -0.11 -3.96 16 6 C 0.55 17.36 6.96 87.66 0.61 17.97 16 7 O -0.59 -25.25 16.33 -3.03 -0.05 -25.30 16 8 N -0.71 -19.93 5.07 -442.39 -2.25 -22.17 16 9 C 0.16 5.79 2.46 45.02 0.11 5.90 16 10 C -0.13 -5.40 5.65 30.67 0.17 -5.23 16 11 C 0.18 9.70 5.31 86.36 0.46 10.15 16 12 N -0.61 -31.32 2.99 -699.12 -2.09 -33.42 16 13 C -0.26 -14.59 9.58 84.03 0.80 -13.79 16 14 H 0.08 3.95 7.89 -2.91 -0.02 3.93 16 15 C -0.05 -3.03 4.89 84.86 0.42 -2.62 16 16 N -0.94 -57.83 11.25 21.65 0.24 -57.59 16 17 Si 0.97 45.33 29.59 68.60 2.03 47.36 16 18 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 19 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 21 C 0.14 5.79 6.51 86.36 0.56 6.35 16 22 C -0.12 -3.76 5.55 30.67 0.17 -3.59 16 23 C -0.15 -2.81 9.78 30.62 0.30 -2.51 16 24 C -0.12 -1.49 9.93 30.62 0.30 -1.19 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.03 8.10 -2.38 -0.02 1.01 16 32 H 0.41 8.43 8.61 -92.71 -0.80 7.63 16 33 H 0.05 2.24 7.51 -2.39 -0.02 2.22 16 34 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 37 H 0.05 3.17 6.09 -2.39 -0.01 3.16 16 38 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.07 2.71 7.94 -2.38 -0.02 2.69 16 41 H 0.09 2.30 8.14 -2.38 -0.02 2.29 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.08 1.95 8.00 -2.39 -0.02 1.93 16 44 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -77.66 372.88 1.94 -75.73 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.15 Total: 18.54 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.43 Total: 9.07 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -4.09 Total: -113.18 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.58 Total: -37.52 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -77.66 1.94 -75.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619652436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.168 kcal (2) G-P(sol) polarization free energy of solvation -77.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds