Wall clock time and date at job start Tue Mar 31 2020 04:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00106 * 2 1 4 4 C 1.52776 * 109.21379 * 61.19967 * 3 2 1 5 5 C 1.53036 * 109.88578 * 169.77066 * 4 3 2 6 6 S 1.81667 * 109.07712 * 63.59338 * 5 4 3 7 7 O 1.42101 * 108.66298 * 59.98171 * 6 5 4 8 8 O 1.42097 * 108.66391 * 191.22816 * 6 5 4 9 9 C 1.81668 * 101.30838 * 305.65187 * 6 5 4 10 10 C 1.52597 * 109.24026 * 299.99346 * 3 2 1 11 11 S 1.65598 * 119.99823 * 179.97438 * 2 1 3 12 12 O 1.42101 * 106.40371 * 23.54363 * 11 2 1 13 13 O 1.42104 * 106.40384 * 156.46226 * 11 2 1 14 14 C 1.76205 * 107.22052 * 270.00232 * 11 2 1 15 15 H 1.08003 * 119.99562 * 359.97438 * 14 11 2 16 16 C 1.37879 * 119.99936 * 179.97438 * 14 11 2 17 17 N 1.31507 * 119.99908 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 119.99754 * 179.97438 * 16 14 11 19 19 H 1.48510 * 109.47033 * 89.99944 * 18 16 14 20 20 H 1.48496 * 109.47293 * 209.99933 * 18 16 14 21 21 H 1.48501 * 109.47456 * 330.00467 * 18 16 14 22 22 H 1.08998 * 109.47058 * 90.00190 * 1 2 3 23 23 H 1.08999 * 109.47338 * 210.00773 * 1 2 3 24 24 H 1.09005 * 109.46965 * 330.00692 * 1 2 3 25 25 H 1.09004 * 109.24118 * 180.56033 * 3 2 1 26 26 H 1.08998 * 109.51808 * 49.59067 * 4 3 2 27 27 H 1.09003 * 109.34993 * 289.84506 * 4 3 2 28 28 H 1.09002 * 109.55147 * 303.68748 * 5 4 3 29 29 H 1.09003 * 109.54767 * 183.49563 * 5 4 3 30 30 H 1.09000 * 109.55007 * 174.15498 * 9 6 5 31 31 H 1.09008 * 109.55103 * 294.34978 * 9 6 5 32 32 H 1.08995 * 109.38207 * 70.13363 * 10 3 2 33 33 H 1.08993 * 109.29745 * 310.39442 * 10 3 2 34 34 H 0.97000 * 120.00010 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.8470 2.0516 1.2642 5 6 2.7847 3.2523 1.4097 6 16 2.5220 4.3834 0.0126 7 8 1.1687 4.8167 0.0266 8 8 3.5621 5.3516 0.0096 9 6 2.7601 3.2662 -1.4000 10 6 1.8252 2.0643 -1.2478 11 16 2.2930 -1.4341 0.0006 12 8 1.4113 -2.4067 -0.5434 13 8 3.5760 -1.1571 -0.5439 14 6 2.5537 -1.8852 1.6839 15 1 2.1873 -1.2493 2.4763 16 6 3.2255 -3.0499 1.9894 17 7 3.6721 -3.8238 1.0245 18 14 3.5026 -3.5276 3.7739 19 1 2.3630 -4.3536 4.2478 20 1 4.7607 -4.3081 3.8878 21 1 3.6040 -2.3010 4.6048 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 3.2683 1.0652 -0.0101 26 1 1.9512 1.4036 2.1345 27 1 0.8172 2.4027 1.1977 28 1 3.8192 2.9090 1.4115 29 1 2.5708 3.7710 2.3442 30 1 2.5284 3.7937 -2.3253 31 1 3.7950 2.9244 -1.4243 32 1 0.7969 2.4147 -1.1599 33 1 1.9151 1.4226 -2.1242 34 1 4.1444 -4.6433 1.2394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694151570.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:04 Heat of formation + Delta-G solvation = -194.298945 kcal Electronic energy + Delta-G solvation = -21336.925084 eV Core-core repulsion = 17908.273698 eV Total energy + Delta-G solvation = -3428.651386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 297.058 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.40442 -37.93198 -37.43837 -37.03630 -36.13064 -35.21235 -34.51292 -32.76170 -28.42769 -28.24938 -26.22610 -24.55977 -21.68016 -20.67777 -19.78320 -19.19232 -18.31099 -17.90273 -17.26011 -17.09823 -16.82813 -16.47222 -16.07248 -15.42778 -15.41279 -14.81861 -14.48225 -13.98990 -13.89703 -13.82009 -13.61537 -13.32444 -13.19747 -13.16444 -13.03648 -13.01733 -12.67698 -12.57357 -12.48963 -12.47476 -12.30907 -12.11091 -11.86821 -11.43516 -11.25279 -11.01377 -10.89154 -9.83271 -8.74342 -7.47718 -0.87613 0.28215 1.34122 1.34827 1.50156 1.76893 2.19641 2.58251 2.68771 2.77552 3.09387 3.55549 3.60205 3.75874 3.83479 3.87780 4.10378 4.12028 4.24905 4.41486 4.51116 4.67183 4.73181 4.78774 4.93532 4.94112 4.98214 5.07006 5.22972 5.25836 5.40429 5.92200 5.96099 6.79381 8.20561 Molecular weight = 297.06amu Principal moments of inertia in cm(-1) A = 0.024610 B = 0.005313 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.453394 B = 5268.451515 C = 5714.945022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.002 6.002 3 C 0.118 3.882 4 C -0.126 4.126 5 C -0.593 4.593 6 S 2.431 3.569 7 O -0.966 6.966 8 O -0.981 6.981 9 C -0.594 4.594 10 C -0.122 4.122 11 S 2.714 3.286 12 O -1.042 7.042 13 O -1.036 7.036 14 C -1.038 5.038 15 H 0.123 0.877 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.986 3.014 19 H -0.257 1.257 20 H -0.266 1.266 21 H -0.245 1.245 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.152 0.848 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.150 0.850 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 13.335 1.658 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.839 5.839 3 C 0.011 3.989 4 C -0.166 4.166 5 C -0.724 4.724 6 S 2.616 3.384 7 O -0.964 6.964 8 O -0.978 6.978 9 C -0.725 4.725 10 C -0.162 4.162 11 S 2.817 3.183 12 O -1.032 7.032 13 O -1.026 7.026 14 C -1.171 5.171 15 H 0.141 0.859 16 C -0.142 4.142 17 N -0.527 5.527 18 Si 0.805 3.195 19 H -0.181 1.181 20 H -0.190 1.190 21 H -0.168 1.168 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.123 0.877 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.170 0.830 29 H 0.179 0.821 30 H 0.177 0.823 31 H 0.168 0.832 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.455 13.646 0.766 14.097 hybrid contribution 0.491 -1.436 1.031 1.834 sum -2.964 12.210 1.797 12.692 Atomic orbital electron populations 1.21632 0.77828 1.04076 1.02625 1.57431 1.15511 1.19987 1.90944 1.21275 0.97845 0.84252 0.95485 1.21774 1.00351 0.95360 0.99078 1.30147 1.10516 1.11807 1.19950 1.07499 0.74000 0.77166 0.79713 1.93532 1.35917 1.80471 1.86443 1.93543 1.59340 1.58182 1.86713 1.30152 1.10362 1.11686 1.20308 1.21681 1.00362 0.95114 0.99022 1.00172 0.71200 0.70534 0.76421 1.93304 1.67913 1.60302 1.81666 1.93291 1.42933 1.84859 1.81555 1.30998 1.49999 1.17434 1.18686 0.85884 1.25982 0.89536 0.93357 1.05336 1.69988 1.32423 1.13737 1.36563 0.85181 0.78977 0.79727 0.75652 1.18107 1.19029 1.16776 0.92176 0.92047 0.87740 0.88444 0.88551 0.87551 0.83024 0.82115 0.82252 0.83153 0.87572 0.89578 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 9.53 127.77 1.22 3.59 16 2 N -1.00 -35.44 3.05 -517.61 -1.58 -37.01 16 3 C 0.12 3.29 2.26 44.78 0.10 3.39 16 4 C -0.13 -2.66 4.80 30.53 0.15 -2.52 16 5 C -0.59 -9.68 6.34 71.99 0.46 -9.22 16 6 S 2.43 45.99 5.31 -56.49 -0.30 45.69 16 7 O -0.97 -23.43 17.94 -127.38 -2.29 -25.72 16 8 O -0.98 -25.09 18.10 -127.38 -2.31 -27.40 16 9 C -0.59 -9.95 6.35 71.99 0.46 -9.49 16 10 C -0.12 -2.66 4.85 30.47 0.15 -2.51 16 11 S 2.71 137.49 4.92 -56.49 -0.28 137.21 16 12 O -1.04 -59.87 17.09 -128.00 -2.19 -62.05 16 13 O -1.04 -57.66 16.57 -128.00 -2.12 -59.78 16 14 C -1.04 -53.79 9.75 67.73 0.66 -53.13 16 15 H 0.12 5.62 7.81 -2.91 -0.02 5.59 16 16 C 0.07 3.78 5.46 84.66 0.46 4.24 16 17 N -0.90 -52.00 13.19 21.45 0.28 -51.72 16 18 Si 0.99 39.52 29.54 68.60 2.03 41.54 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.24 -9.00 7.11 99.48 0.71 -8.30 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 1.92 7.79 -2.39 -0.02 1.90 16 24 H 0.10 2.09 6.69 -2.38 -0.02 2.07 16 25 H 0.10 2.97 6.83 -2.38 -0.02 2.95 16 26 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.11 1.82 7.00 -2.39 -0.02 1.80 16 28 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.16 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.15 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.11 1.90 7.85 -2.39 -0.02 1.88 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.30 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -82.94 305.64 -3.99 -86.94 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 1.11 Total: 17.95 kcal Atomic # 6 Polarization: -69.31 SS G_CDS: 3.65 Total: -65.66 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -1.29 Total: -88.73 kcal Atomic # 8 Polarization: -166.05 SS G_CDS: -8.90 Total: -174.95 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: 183.48 SS G_CDS: -0.58 Total: 182.91 kcal Total: -82.94 -3.99 -86.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694151570.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.362 kcal (2) G-P(sol) polarization free energy of solvation -82.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds