Wall clock time and date at job start Tue Mar 31 2020 03:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48177 * 111.07339 * 2 1 4 4 C 1.53938 * 86.22570 * 137.46150 * 3 2 1 5 5 C 1.47964 * 110.99740 * 99.29130 * 2 1 3 6 6 H 1.09001 * 113.76129 * 336.83933 * 5 2 1 7 7 C 1.52997 * 113.75937 * 108.09958 * 5 2 1 8 8 N 1.46499 * 109.47234 * 283.68164 * 7 5 2 9 9 C 1.34776 * 119.99766 * 179.97438 * 8 7 5 10 10 O 1.21585 * 119.99969 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99595 * 179.72473 * 9 8 7 12 12 C 1.46498 * 119.99611 * 180.27910 * 11 9 8 13 13 C 1.53042 * 109.46010 * 275.02438 * 12 11 9 14 14 C 1.53192 * 109.31415 * 178.60165 * 13 12 11 15 15 N 1.46921 * 108.76267 * 54.65819 * 14 13 12 16 16 C 1.36943 * 120.63527 * 126.36147 * 15 14 13 17 17 H 1.07994 * 120.00272 * 207.70421 * 16 15 14 18 18 C 1.38808 * 119.99336 * 27.69675 * 16 15 14 19 19 N 1.31624 * 120.00225 * 17.35502 * 18 16 15 20 20 Si 1.86800 * 120.00052 * 197.35311 * 18 16 15 21 21 H 1.48502 * 109.47071 * 59.99905 * 20 18 16 22 22 H 1.48499 * 109.47545 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46980 * 300.00407 * 20 18 16 24 24 C 1.46927 * 118.73975 * 306.38323 * 15 14 13 25 25 C 1.53048 * 109.45787 * 154.97463 * 12 11 9 26 26 H 1.09001 * 109.47422 * 320.70867 * 1 2 3 27 27 H 1.08996 * 109.47366 * 80.71596 * 1 2 3 28 28 H 1.09003 * 109.47334 * 200.71534 * 1 2 3 29 29 H 1.09008 * 113.66187 * 23.13725 * 3 2 1 30 30 H 1.09006 * 113.92344 * 251.81946 * 3 2 1 31 31 H 1.09001 * 113.73243 * 222.00944 * 4 3 2 32 32 H 1.08997 * 113.82866 * 90.73770 * 4 3 2 33 33 H 1.09004 * 109.46859 * 163.68008 * 7 5 2 34 34 H 1.09004 * 109.47195 * 43.68456 * 7 5 2 35 35 H 0.96998 * 119.99708 * 0.02562 * 8 7 5 36 36 H 0.96998 * 119.99820 * 0.27839 * 11 9 8 37 37 H 1.09000 * 109.46174 * 35.00056 * 12 11 9 38 38 H 1.08997 * 109.49908 * 298.57202 * 13 12 11 39 39 H 1.09003 * 109.49670 * 58.66840 * 13 12 11 40 40 H 1.08997 * 109.60034 * 294.87341 * 14 13 12 41 41 H 1.08998 * 109.58348 * 174.43607 * 14 13 12 42 42 H 0.97004 * 119.99608 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.58840 * 293.81762 * 24 15 14 44 44 H 1.09001 * 109.58720 * 173.39341 * 24 15 14 45 45 H 1.08995 * 109.49487 * 301.33289 * 25 12 11 46 46 H 1.08994 * 109.49653 * 61.40054 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3827 0.0000 4 6 3.0215 0.8812 1.0385 5 6 1.9992 -0.2230 1.3633 6 1 1.3003 0.0449 2.1556 7 6 2.6262 -1.6043 1.5625 8 7 1.5665 -2.6065 1.6997 9 6 1.8850 -3.9029 1.8848 10 8 3.0518 -4.2406 1.9384 11 7 0.9100 -4.8241 2.0166 12 6 1.2562 -6.2324 2.2239 13 6 1.5040 -6.9013 0.8699 14 6 1.8997 -8.3644 1.0923 15 7 0.8642 -9.0155 1.9061 16 6 0.2645 -10.1702 1.4790 17 1 -0.7414 -10.4049 1.7942 18 6 0.9497 -11.0389 0.6406 19 7 2.2578 -10.9487 0.5266 20 14 0.0151 -12.3358 -0.3258 21 1 -0.9675 -11.6737 -1.2209 22 1 0.9698 -13.1304 -1.1397 23 1 -0.7000 -13.2347 0.6153 24 6 0.4837 -8.4040 3.1868 25 6 0.1042 -6.9404 2.9409 26 1 -0.3634 0.7953 0.6508 27 1 -0.3634 0.1658 -1.0142 28 1 -0.3634 -0.9612 0.3635 29 1 1.3024 2.1210 0.3923 30 1 2.4508 1.6834 -0.9467 31 1 3.1903 1.5780 1.8595 32 1 3.9473 0.5071 0.6015 33 1 3.2396 -1.5983 2.4635 34 1 3.2481 -1.8487 0.7013 35 1 0.6357 -2.3371 1.6565 36 1 -0.0208 -4.5546 1.9742 37 1 2.1581 -6.2989 2.8324 38 1 0.5947 -6.8571 0.2705 39 1 2.3089 -6.3821 0.3496 40 1 2.8559 -8.4094 1.6136 41 1 1.9811 -8.8711 0.1307 42 1 2.7366 -11.5561 -0.0590 43 1 1.3245 -8.4523 3.8788 44 1 -0.3692 -8.9369 3.6071 45 1 -0.0874 -6.4490 3.8948 46 1 -0.7919 -6.8954 2.3220 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917312944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:20 Heat of formation + Delta-G solvation = 26.010843 kcal Electronic energy + Delta-G solvation = -24301.300943 eV Core-core repulsion = 20841.516781 eV Total energy + Delta-G solvation = -3459.784163 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.53422 -39.60269 -37.40782 -34.59841 -34.19951 -32.06964 -31.11088 -30.01386 -29.53921 -28.13428 -24.95320 -24.52620 -23.52750 -22.16789 -21.84373 -20.63740 -19.99161 -19.33167 -18.01460 -16.87826 -16.53817 -16.21219 -15.53164 -15.26558 -14.99041 -14.73257 -14.27975 -13.97111 -13.72830 -13.53670 -13.43258 -13.30923 -12.94685 -12.63648 -12.30382 -12.19488 -11.88758 -11.84754 -11.43224 -11.20789 -11.15879 -11.06186 -10.87613 -10.67958 -10.32564 -10.20881 -10.03185 -9.89733 -9.69638 -9.49887 -9.23664 -9.05295 -8.54085 -8.32155 -6.64037 -5.73849 -3.16471 2.84639 3.41344 3.43238 3.47387 3.48343 3.50508 4.06143 4.29708 4.47285 4.53344 4.69086 4.72382 4.87817 4.91432 5.01914 5.24940 5.34238 5.36504 5.44937 5.48600 5.51313 5.52413 5.64366 5.72103 5.80917 5.90656 5.96120 6.15921 6.29783 6.43984 6.50420 6.53094 6.63347 6.66808 6.71013 6.83660 6.97774 7.02071 7.19271 7.45844 7.74655 7.83739 8.23671 8.49757 8.86825 9.25622 9.89221 10.45985 11.34626 Molecular weight = 296.20amu Principal moments of inertia in cm(-1) A = 0.030008 B = 0.002698 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.852840 B =10374.321326 C =10527.711531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.476 5.476 3 C -0.001 4.001 4 C -0.135 4.135 5 C 0.015 3.985 6 H 0.083 0.917 7 C 0.160 3.840 8 N -0.749 5.749 9 C 0.702 3.298 10 O -0.589 6.589 11 N -0.741 5.741 12 C 0.169 3.831 13 C -0.146 4.146 14 C 0.174 3.826 15 N -0.593 5.593 16 C -0.255 4.255 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.149 3.851 25 C -0.138 4.138 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.389 0.611 36 H 0.388 0.612 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.089 0.911 42 H 0.255 0.745 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 25.349 2.232 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.199 5.199 3 C -0.129 4.129 4 C -0.174 4.174 5 C -0.095 4.095 6 H 0.101 0.899 7 C 0.035 3.965 8 N -0.406 5.406 9 C 0.401 3.599 10 O -0.467 6.467 11 N -0.394 5.394 12 C 0.065 3.935 13 C -0.187 4.187 14 C 0.047 3.953 15 N -0.316 5.316 16 C -0.384 4.384 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.022 3.978 25 C -0.178 4.178 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.222 0.778 36 H 0.221 0.779 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.596 24.425 1.655 24.618 hybrid contribution -1.822 0.190 -0.032 1.832 sum -4.418 24.614 1.623 25.060 Atomic orbital electron populations 1.22884 0.89576 1.01245 1.02294 1.68610 1.09122 1.18449 1.23721 1.23943 0.97303 0.91168 1.00507 1.23318 0.98346 0.96795 0.98924 1.23774 0.97760 0.95875 0.92044 0.89872 1.21037 0.89411 0.83930 1.02103 1.45072 1.09437 1.06102 1.79974 1.15999 0.85508 0.80436 0.77916 1.90930 1.17600 1.80032 1.58095 1.45515 1.07734 1.08139 1.78021 1.20895 0.98397 0.76613 0.97594 1.22574 1.00691 0.99704 0.95730 1.20765 0.89787 0.87032 0.97675 1.44108 1.45045 1.25735 1.16670 1.19129 0.95750 0.96749 1.26793 0.91714 1.25052 0.95022 0.97561 1.02026 1.70036 1.05473 1.39284 1.39721 0.86374 0.78945 0.81301 0.80147 1.21087 1.21646 1.20913 1.20837 0.97818 0.89998 0.89193 1.22341 0.97669 0.98874 0.98933 0.94733 0.90922 0.91429 0.91245 0.89096 0.90560 0.88465 0.91170 0.90746 0.77768 0.77903 0.90111 0.92871 0.92809 0.96134 0.89298 0.93537 0.96174 0.92393 0.92738 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 9.65 60.07 0.58 0.51 16 2 N -0.48 -3.91 6.37 -237.96 -1.52 -5.42 16 3 C 0.00 0.00 7.98 -2.64 -0.02 -0.02 16 4 C -0.14 -0.82 7.86 -25.79 -0.20 -1.03 16 5 C 0.02 0.11 3.34 -66.65 -0.22 -0.11 16 6 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 7 C 0.16 1.69 5.71 -4.04 -0.02 1.66 16 8 N -0.75 -8.67 5.56 -65.22 -0.36 -9.04 16 9 C 0.70 11.24 8.53 -86.91 -0.74 10.50 16 10 O -0.59 -12.16 16.00 5.29 0.08 -12.07 16 11 N -0.74 -11.00 5.08 -58.63 -0.30 -11.30 16 12 C 0.17 3.08 2.42 -67.89 -0.16 2.91 16 13 C -0.15 -3.07 5.65 -26.61 -0.15 -3.22 16 14 C 0.17 4.36 5.31 -3.71 -0.02 4.34 16 15 N -0.59 -15.11 2.99 -172.32 -0.52 -15.62 16 16 C -0.25 -7.06 9.59 -15.06 -0.14 -7.20 16 17 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 18 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 19 N -0.90 -26.77 11.19 55.49 0.62 -26.15 16 20 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 25 C -0.14 -2.35 5.55 -26.61 -0.15 -2.50 16 26 H 0.03 0.19 7.62 -51.93 -0.40 -0.20 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.45 7.15 -51.93 -0.37 0.08 16 29 H 0.07 0.34 7.62 -51.92 -0.40 -0.05 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.39 3.46 7.49 -40.82 -0.31 3.16 16 36 H 0.39 4.53 8.62 -40.82 -0.35 4.18 16 37 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 2.48 6.04 -51.93 -0.31 2.17 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -33.43 362.93 -10.88 -44.31 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.97 Total: 4.00 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -1.37 Total: 8.91 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -2.07 Total: -67.53 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.43 -10.88 -44.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917312944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.323 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds