Wall clock time and date at job start Tue Mar 31 2020 03:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48177 * 111.07339 * 2 1 4 4 C 1.53938 * 86.22570 * 137.46150 * 3 2 1 5 5 C 1.47964 * 110.99740 * 99.29130 * 2 1 3 6 6 H 1.09001 * 113.76129 * 336.83933 * 5 2 1 7 7 C 1.52997 * 113.75937 * 108.09958 * 5 2 1 8 8 N 1.46499 * 109.47234 * 283.68164 * 7 5 2 9 9 C 1.34776 * 119.99766 * 179.97438 * 8 7 5 10 10 O 1.21585 * 119.99969 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99595 * 179.72473 * 9 8 7 12 12 C 1.46498 * 119.99611 * 180.27910 * 11 9 8 13 13 C 1.53042 * 109.46010 * 275.02438 * 12 11 9 14 14 C 1.53192 * 109.31415 * 178.60165 * 13 12 11 15 15 N 1.46921 * 108.76267 * 54.65819 * 14 13 12 16 16 C 1.36943 * 120.63527 * 126.36147 * 15 14 13 17 17 H 1.07994 * 120.00272 * 207.70421 * 16 15 14 18 18 C 1.38808 * 119.99336 * 27.69675 * 16 15 14 19 19 N 1.31624 * 120.00225 * 17.35502 * 18 16 15 20 20 Si 1.86800 * 120.00052 * 197.35311 * 18 16 15 21 21 H 1.48502 * 109.47071 * 59.99905 * 20 18 16 22 22 H 1.48499 * 109.47545 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46980 * 300.00407 * 20 18 16 24 24 C 1.46927 * 118.73975 * 306.38323 * 15 14 13 25 25 C 1.53048 * 109.45787 * 154.97463 * 12 11 9 26 26 H 1.09001 * 109.47422 * 320.70867 * 1 2 3 27 27 H 1.08996 * 109.47366 * 80.71596 * 1 2 3 28 28 H 1.09003 * 109.47334 * 200.71534 * 1 2 3 29 29 H 1.09008 * 113.66187 * 23.13725 * 3 2 1 30 30 H 1.09006 * 113.92344 * 251.81946 * 3 2 1 31 31 H 1.09001 * 113.73243 * 222.00944 * 4 3 2 32 32 H 1.08997 * 113.82866 * 90.73770 * 4 3 2 33 33 H 1.09004 * 109.46859 * 163.68008 * 7 5 2 34 34 H 1.09004 * 109.47195 * 43.68456 * 7 5 2 35 35 H 0.96998 * 119.99708 * 0.02562 * 8 7 5 36 36 H 0.96998 * 119.99820 * 0.27839 * 11 9 8 37 37 H 1.09000 * 109.46174 * 35.00056 * 12 11 9 38 38 H 1.08997 * 109.49908 * 298.57202 * 13 12 11 39 39 H 1.09003 * 109.49670 * 58.66840 * 13 12 11 40 40 H 1.08997 * 109.60034 * 294.87341 * 14 13 12 41 41 H 1.08998 * 109.58348 * 174.43607 * 14 13 12 42 42 H 0.97004 * 119.99608 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.58840 * 293.81762 * 24 15 14 44 44 H 1.09001 * 109.58720 * 173.39341 * 24 15 14 45 45 H 1.08995 * 109.49487 * 301.33289 * 25 12 11 46 46 H 1.08994 * 109.49653 * 61.40054 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3827 0.0000 4 6 3.0215 0.8812 1.0385 5 6 1.9992 -0.2230 1.3633 6 1 1.3003 0.0449 2.1556 7 6 2.6262 -1.6043 1.5625 8 7 1.5665 -2.6065 1.6997 9 6 1.8850 -3.9029 1.8848 10 8 3.0518 -4.2406 1.9384 11 7 0.9100 -4.8241 2.0166 12 6 1.2562 -6.2324 2.2239 13 6 1.5040 -6.9013 0.8699 14 6 1.8997 -8.3644 1.0923 15 7 0.8642 -9.0155 1.9061 16 6 0.2645 -10.1702 1.4790 17 1 -0.7414 -10.4049 1.7942 18 6 0.9497 -11.0389 0.6406 19 7 2.2578 -10.9487 0.5266 20 14 0.0151 -12.3358 -0.3258 21 1 -0.9675 -11.6737 -1.2209 22 1 0.9698 -13.1304 -1.1397 23 1 -0.7000 -13.2347 0.6153 24 6 0.4837 -8.4040 3.1868 25 6 0.1042 -6.9404 2.9409 26 1 -0.3634 0.7953 0.6508 27 1 -0.3634 0.1658 -1.0142 28 1 -0.3634 -0.9612 0.3635 29 1 1.3024 2.1210 0.3923 30 1 2.4508 1.6834 -0.9467 31 1 3.1903 1.5780 1.8595 32 1 3.9473 0.5071 0.6015 33 1 3.2396 -1.5983 2.4635 34 1 3.2481 -1.8487 0.7013 35 1 0.6357 -2.3371 1.6565 36 1 -0.0208 -4.5546 1.9742 37 1 2.1581 -6.2989 2.8324 38 1 0.5947 -6.8571 0.2705 39 1 2.3089 -6.3821 0.3496 40 1 2.8559 -8.4094 1.6136 41 1 1.9811 -8.8711 0.1307 42 1 2.7366 -11.5561 -0.0590 43 1 1.3245 -8.4523 3.8788 44 1 -0.3692 -8.9369 3.6071 45 1 -0.0874 -6.4490 3.8948 46 1 -0.7919 -6.8954 2.3220 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917312944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:19 Heat of formation + Delta-G solvation = -0.297323 kcal Electronic energy + Delta-G solvation = -24302.441751 eV Core-core repulsion = 20841.516781 eV Total energy + Delta-G solvation = -3460.924970 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38074 -40.65609 -39.05594 -36.06923 -35.54009 -33.86491 -31.89062 -31.61177 -31.16286 -29.09204 -26.80332 -25.02797 -24.46418 -23.89249 -23.41769 -21.87022 -21.08840 -20.60597 -19.26073 -18.66617 -17.61161 -17.11238 -16.78660 -16.35596 -16.10979 -15.95573 -15.73309 -15.34869 -15.23119 -14.96394 -14.74056 -14.47808 -14.02558 -14.00382 -13.94183 -13.18382 -13.05762 -12.98348 -12.63824 -12.55317 -12.39211 -12.35269 -12.11505 -12.07284 -11.88175 -11.79807 -11.70071 -11.52749 -11.41131 -11.15440 -10.56872 -10.29178 -9.75763 -9.70645 -8.71321 -7.86473 -5.32570 1.47818 1.50838 1.57660 1.71147 2.20235 2.52517 2.87967 3.26305 3.33238 3.59434 3.68118 3.82124 3.89529 4.08918 4.11309 4.17404 4.34733 4.35761 4.42325 4.48739 4.54175 4.66611 4.68224 4.80440 4.81252 4.84283 4.91652 4.98795 4.99613 5.06534 5.09709 5.14321 5.25249 5.32874 5.39713 5.46246 5.52283 5.62368 5.64570 5.70050 6.04664 6.11656 6.39127 7.13470 7.15166 7.64017 7.85129 8.38046 9.20596 Molecular weight = 296.20amu Principal moments of inertia in cm(-1) A = 0.030008 B = 0.002698 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.852840 B =10374.321326 C =10527.711531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.505 5.505 3 C 0.003 3.997 4 C -0.132 4.132 5 C 0.023 3.977 6 H 0.103 0.897 7 C 0.160 3.840 8 N -0.728 5.728 9 C 0.697 3.303 10 O -0.639 6.639 11 N -0.726 5.726 12 C 0.181 3.819 13 C -0.130 4.130 14 C 0.183 3.817 15 N -0.609 5.609 16 C -0.262 4.262 17 H 0.075 0.925 18 C -0.056 4.056 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.277 1.277 22 H -0.298 1.298 23 H -0.272 1.272 24 C 0.141 3.859 25 C -0.120 4.120 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.407 0.593 36 H 0.410 0.590 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.040 0.960 40 H -0.012 1.012 41 H 0.054 0.946 42 H 0.249 0.751 43 H 0.012 0.988 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 27.500 2.953 28.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.228 5.228 3 C -0.125 4.125 4 C -0.170 4.170 5 C -0.087 4.087 6 H 0.121 0.879 7 C 0.035 3.965 8 N -0.385 5.385 9 C 0.397 3.603 10 O -0.521 6.521 11 N -0.380 5.380 12 C 0.075 3.925 13 C -0.171 4.171 14 C 0.057 3.943 15 N -0.333 5.333 16 C -0.392 4.392 17 H 0.093 0.907 18 C -0.251 4.251 19 N -0.585 5.585 20 Si 0.798 3.202 21 H -0.203 1.203 22 H -0.224 1.224 23 H -0.197 1.197 24 C 0.015 3.985 25 C -0.159 4.159 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.243 0.757 36 H 0.246 0.754 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.006 0.994 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.383 26.648 2.393 27.292 hybrid contribution -0.949 -0.430 -0.230 1.067 sum -6.332 26.218 2.163 27.059 Atomic orbital electron populations 1.22908 0.88822 1.01839 1.02519 1.68579 1.10139 1.20040 1.24089 1.23983 0.97370 0.90564 1.00574 1.23309 0.97675 0.96489 0.99530 1.23726 0.98541 0.93920 0.92485 0.87925 1.21103 0.89246 0.85325 1.00844 1.44901 1.10761 1.04600 1.78222 1.16217 0.84781 0.81679 0.77651 1.90906 1.19848 1.81082 1.60255 1.45092 1.08732 1.06522 1.77689 1.20502 0.98241 0.78396 0.95345 1.22319 1.00246 0.96872 0.97615 1.20455 0.88901 0.89375 0.95588 1.44355 1.44793 1.25694 1.18466 1.19550 0.96177 0.97107 1.26387 0.90743 1.25890 0.95730 1.00099 1.03380 1.70216 1.07166 1.40479 1.40679 0.85296 0.77488 0.78732 0.78664 1.20269 1.22408 1.19740 1.21057 0.97851 0.92465 0.87118 1.22130 0.97024 0.95862 1.00890 0.93128 0.91291 0.91457 0.89505 0.89251 0.88600 0.89454 0.91497 0.93313 0.75745 0.75415 0.92705 0.92202 0.94100 0.99361 0.92710 0.94187 0.97007 0.91223 0.88967 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 9.65 127.69 1.23 1.10 16 2 N -0.51 -7.32 6.37 -906.76 -5.77 -13.09 16 3 C 0.00 0.03 7.98 86.36 0.69 0.72 16 4 C -0.13 -1.34 7.86 31.24 0.25 -1.09 16 5 C 0.02 0.29 3.34 45.02 0.15 0.44 16 6 H 0.10 0.95 7.92 -2.39 -0.02 0.93 16 7 C 0.16 3.23 5.71 86.38 0.49 3.72 16 8 N -0.73 -15.65 5.56 -478.53 -2.66 -18.31 16 9 C 0.70 21.67 8.53 179.05 1.53 23.20 16 10 O -0.64 -26.83 16.00 -3.99 -0.06 -26.90 16 11 N -0.73 -20.07 5.08 -457.67 -2.33 -22.40 16 12 C 0.18 6.41 2.42 45.02 0.11 6.52 16 13 C -0.13 -5.51 5.65 30.67 0.17 -5.33 16 14 C 0.18 9.58 5.31 86.36 0.46 10.04 16 15 N -0.61 -31.31 2.99 -699.11 -2.09 -33.41 16 16 C -0.26 -14.53 9.59 84.03 0.81 -13.72 16 17 H 0.07 3.91 7.89 -2.91 -0.02 3.89 16 18 C -0.06 -3.20 4.91 84.86 0.42 -2.78 16 19 N -0.94 -57.82 11.19 21.65 0.24 -57.58 16 20 Si 0.97 45.51 29.59 68.60 2.03 47.54 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C 0.14 5.75 6.52 86.36 0.56 6.31 16 25 C -0.12 -3.74 5.55 30.67 0.17 -3.57 16 26 H 0.05 0.39 7.62 -2.39 -0.02 0.38 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.72 7.15 -2.39 -0.02 0.70 16 29 H 0.09 0.57 7.62 -2.38 -0.02 0.56 16 30 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 1.07 8.10 -2.39 -0.02 1.05 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.41 6.06 7.49 -92.71 -0.69 5.37 16 36 H 0.41 8.07 8.62 -92.71 -0.80 7.27 16 37 H 0.05 2.28 7.58 -2.39 -0.02 2.26 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H 0.05 3.21 6.04 -2.39 -0.01 3.20 16 42 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 43 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 44 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 45 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -75.44 362.93 -4.14 -79.57 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.52 Total: 19.01 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: 7.03 Total: 25.56 kcal Atomic # 7 Polarization: -132.17 SS G_CDS: -12.61 Total: -144.79 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.06 Total: -26.90 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -75.44 -4.14 -79.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917312944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.276 kcal (2) G-P(sol) polarization free energy of solvation -75.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds