Wall clock time and date at job start Tue Mar 31 2020 03:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47476 * 2 1 4 4 C 1.42896 * 114.00302 * 179.97438 * 3 2 1 5 5 C 1.53778 * 113.61696 * 210.00551 * 4 3 2 6 6 C 1.53783 * 87.08088 * 220.02091 * 5 4 3 7 7 C 1.50699 * 113.61445 * 139.98022 * 6 5 4 8 8 O 1.21282 * 120.00408 * 1.52971 * 7 6 5 9 9 N 1.34781 * 119.99888 * 181.53064 * 7 6 5 10 10 C 1.46501 * 120.00100 * 359.97438 * 9 7 6 11 11 C 1.53000 * 109.46895 * 270.00564 * 10 9 7 12 12 C 1.46499 * 120.00003 * 180.02562 * 9 7 6 13 13 C 1.53499 * 114.20527 * 239.99837 * 12 9 7 14 14 N 1.47066 * 87.98642 * 220.14732 * 13 12 9 15 15 C 1.36935 * 136.05905 * 207.08539 * 14 13 12 16 16 H 1.08000 * 119.99741 * 6.75982 * 15 14 13 17 17 C 1.38807 * 120.00115 * 186.75868 * 15 14 13 18 18 N 1.31618 * 120.00072 * 172.25744 * 17 15 14 19 19 Si 1.86798 * 119.99926 * 352.25358 * 17 15 14 20 20 H 1.48504 * 109.47011 * 175.35922 * 19 17 15 21 21 H 1.48496 * 109.47781 * 295.36183 * 19 17 15 22 22 H 1.48498 * 109.46976 * 55.36546 * 19 17 15 23 23 C 1.47070 * 87.88467 * 27.33761 * 14 13 12 24 24 C 1.53783 * 87.17208 * 25.38783 * 6 5 4 25 25 H 1.08998 * 109.47149 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47413 * 300.00125 * 1 2 3 27 27 H 1.09007 * 109.47274 * 59.99552 * 1 2 3 28 28 H 1.09007 * 109.47085 * 240.00407 * 2 1 3 29 29 H 1.09000 * 109.46921 * 120.00597 * 2 1 3 30 30 H 1.09004 * 112.90726 * 341.25820 * 4 3 2 31 31 H 1.08998 * 113.61552 * 105.46950 * 5 4 3 32 32 H 1.09004 * 113.61355 * 334.56534 * 5 4 3 33 33 H 1.09004 * 113.61428 * 270.79712 * 6 5 4 34 34 H 1.09003 * 109.47009 * 29.99604 * 10 9 7 35 35 H 1.08993 * 109.46991 * 150.00197 * 10 9 7 36 36 H 1.09007 * 109.46967 * 299.99391 * 11 10 9 37 37 H 1.09002 * 109.47914 * 59.99482 * 11 10 9 38 38 H 1.09003 * 109.47386 * 180.02562 * 11 10 9 39 39 H 1.09003 * 113.28482 * 13.05757 * 12 9 7 40 40 H 1.09001 * 113.46838 * 105.36625 * 13 12 9 41 41 H 1.09000 * 113.46246 * 334.92583 * 13 12 9 42 42 H 0.97000 * 119.99802 * 4.88275 * 18 17 15 43 43 H 1.09004 * 113.46146 * 87.44024 * 23 14 13 44 44 H 1.08996 * 113.47229 * 217.87578 * 23 14 13 45 45 H 1.09003 * 113.61352 * 89.16330 * 24 6 5 46 46 H 1.08999 * 113.61151 * 220.05830 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9484 2.7252 0.7052 6 6 4.9900 2.8312 -0.4212 7 6 5.2279 4.2427 -0.8924 8 8 4.6403 5.1646 -0.3672 9 7 6.0937 4.4807 -1.8976 10 6 6.8039 3.3672 -2.5317 11 6 8.1225 3.1187 -1.7965 12 6 6.3254 5.8529 -2.3553 13 6 5.9795 6.0907 -3.8318 14 7 7.1856 6.9270 -3.9259 15 6 7.5954 7.9835 -4.6948 16 1 6.9048 8.4525 -5.3800 17 6 8.8982 8.4515 -4.5934 18 7 9.3376 9.3624 -5.4357 19 14 10.0278 7.7887 -3.2614 20 1 11.3872 8.3606 -3.4355 21 1 9.4975 8.1698 -1.9277 22 1 10.0968 6.3088 -3.3623 23 6 7.7605 6.1252 -2.8353 24 6 4.0049 2.0453 -1.3025 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9288 0.5458 0.3235 31 1 4.3836 2.5318 1.6857 32 1 3.2299 3.5449 0.7141 33 1 5.9147 2.2930 -0.2129 34 1 6.1874 2.4695 -2.4853 35 1 7.0095 3.6135 -3.5733 36 1 8.7391 4.0164 -1.8428 37 1 7.9170 2.8725 -0.7547 38 1 8.6512 2.2905 -2.2685 39 1 5.9272 6.6068 -1.6761 40 1 5.0533 6.6468 -3.9766 41 1 6.0291 5.1875 -4.4400 42 1 8.7318 9.7582 -6.0816 43 1 8.2795 5.2311 -3.1809 44 1 8.3516 6.7106 -2.1311 45 1 3.3020 2.6787 -1.8436 46 1 4.4858 1.3039 -1.9406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949988931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:17 Heat of formation + Delta-G solvation = -18.680253 kcal Electronic energy + Delta-G solvation = -24789.920420 eV Core-core repulsion = 21295.905555 eV Total energy + Delta-G solvation = -3494.014865 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.87086 -40.45604 -39.10863 -36.96031 -36.51494 -34.50340 -31.85591 -31.50758 -29.88643 -27.21946 -27.05587 -26.70826 -24.64822 -24.07756 -23.61231 -21.88490 -20.68680 -19.82311 -19.67204 -18.68110 -17.96334 -17.34966 -16.82304 -16.59388 -16.56481 -16.22479 -15.71070 -15.24481 -15.07426 -14.60445 -14.52546 -14.17250 -13.91933 -13.65122 -13.56201 -13.42993 -13.37408 -13.28936 -13.19388 -12.73502 -12.44859 -12.39330 -12.25838 -12.20752 -12.02380 -11.89583 -11.73876 -11.54913 -11.43882 -11.22140 -11.03370 -10.73173 -10.30782 -9.63862 -9.25767 -8.71278 -5.53802 1.34758 1.45482 1.55611 1.65279 1.87159 2.49533 2.81694 2.93746 3.20344 3.40842 3.50237 3.55804 3.72922 3.80792 3.96300 4.04892 4.13284 4.24405 4.26410 4.32871 4.39553 4.45849 4.48949 4.50818 4.56221 4.58897 4.67357 4.73966 4.81579 4.87109 4.88545 4.97358 5.02937 5.07742 5.09074 5.10675 5.14357 5.24501 5.34854 5.44414 5.61214 5.88777 6.43110 6.44851 6.63707 7.16732 7.25094 8.18321 8.84186 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.032928 B = 0.003206 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.137635 B = 8731.210653 C = 9002.447097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.048 3.952 3 O -0.403 6.403 4 C 0.072 3.928 5 C -0.123 4.123 6 C -0.125 4.125 7 C 0.520 3.480 8 O -0.589 6.589 9 N -0.592 5.592 10 C 0.093 3.907 11 C -0.176 4.176 12 C 0.121 3.879 13 C 0.113 3.887 14 N -0.655 5.655 15 C -0.293 4.293 16 H 0.051 0.949 17 C -0.082 4.082 18 N -0.966 5.966 19 Si 1.108 2.892 20 H -0.301 1.301 21 H -0.282 1.282 22 H -0.248 1.248 23 C 0.092 3.908 24 C -0.134 4.134 25 H 0.090 0.910 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.153 0.847 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.038 0.962 41 H 0.066 0.934 42 H 0.247 0.753 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.085 -28.257 13.035 32.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.027 4.027 3 O -0.322 6.322 4 C 0.015 3.985 5 C -0.161 4.161 6 C -0.146 4.146 7 C 0.310 3.690 8 O -0.469 6.469 9 N -0.323 5.323 10 C -0.029 4.029 11 C -0.234 4.234 12 C 0.015 3.985 13 C -0.013 4.013 14 N -0.384 5.384 15 C -0.421 4.421 16 H 0.068 0.932 17 C -0.274 4.274 18 N -0.611 5.611 19 Si 0.933 3.067 20 H -0.229 1.229 21 H -0.210 1.210 22 H -0.173 1.173 23 C -0.033 4.033 24 C -0.172 4.172 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.143 0.857 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.170 0.830 34 H 0.133 0.867 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.932 -27.372 13.712 31.891 hybrid contribution -1.606 1.097 -1.269 2.322 sum -10.538 -26.275 12.443 30.923 Atomic orbital electron populations 1.21793 0.93853 1.03232 1.02277 1.22720 0.95806 0.82970 1.01253 1.87984 1.21505 1.28146 1.94593 1.23747 0.80926 0.98376 0.95494 1.23121 0.96774 0.98019 0.98209 1.22633 1.01155 0.91400 0.99431 1.21194 0.77395 0.92097 0.78273 1.90672 1.50375 1.47853 1.58044 1.48058 1.42478 1.06694 1.35119 1.21940 0.94392 0.88939 0.97584 1.22355 0.96677 1.02642 1.01745 1.22837 0.96260 0.84645 0.94755 1.22909 0.90237 0.93911 0.94258 1.45727 1.17813 1.33354 1.41459 1.19957 0.97376 1.07113 1.17635 0.93150 1.27117 0.97300 0.99474 1.03499 1.71026 1.36225 1.32301 1.21531 0.83280 0.73562 0.77124 0.72707 1.22862 1.20972 1.17256 1.23443 0.95556 0.94972 0.89333 1.23469 0.96819 0.99300 0.97620 0.89097 0.92708 0.92910 0.92071 0.91871 0.85702 0.88938 0.91489 0.82990 0.86661 0.90459 0.93956 0.91043 0.88750 0.88323 0.94371 0.91622 0.94405 0.90321 0.93826 0.91374 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.05 0.57 6.50 71.98 0.47 1.04 16 3 O -0.40 -7.54 10.36 -148.98 -1.54 -9.08 16 4 C 0.07 1.01 4.31 31.18 0.13 1.14 16 5 C -0.12 -2.31 7.23 31.12 0.22 -2.08 16 6 C -0.13 -2.14 2.80 -11.01 -0.03 -2.17 16 7 C 0.52 14.62 7.20 87.66 0.63 15.25 16 8 O -0.59 -22.55 15.42 -3.04 -0.05 -22.59 16 9 N -0.59 -16.23 2.72 -796.64 -2.16 -18.39 16 10 C 0.09 1.72 4.99 86.38 0.43 2.15 16 11 C -0.18 -2.83 9.86 71.98 0.71 -2.12 16 12 C 0.12 4.44 4.57 45.55 0.21 4.65 16 13 C 0.11 4.57 8.24 83.18 0.69 5.25 16 14 N -0.65 -32.65 3.70 -737.98 -2.73 -35.38 16 15 C -0.29 -17.60 11.08 84.03 0.93 -16.67 16 16 H 0.05 3.27 8.05 -2.91 -0.02 3.24 16 17 C -0.08 -5.00 5.50 84.86 0.47 -4.53 16 18 N -0.97 -63.37 13.70 21.65 0.30 -63.08 16 19 Si 1.11 53.96 25.13 68.60 1.72 55.69 16 20 H -0.30 -14.89 7.11 99.48 0.71 -14.19 16 21 H -0.28 -13.14 6.65 99.48 0.66 -12.48 16 22 H -0.25 -10.39 6.13 99.48 0.61 -9.78 16 23 C 0.09 3.74 4.42 83.27 0.37 4.11 16 24 C -0.13 -1.95 6.69 31.18 0.21 -1.74 16 25 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.13 0.88 7.87 -2.38 -0.02 0.86 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.79 7.45 -2.39 -0.02 1.77 16 33 H 0.15 1.50 6.96 -2.38 -0.02 1.49 16 34 H 0.12 1.32 5.66 -2.39 -0.01 1.30 16 35 H 0.08 1.61 6.18 -2.39 -0.01 1.59 16 36 H 0.04 0.92 6.09 -2.38 -0.01 0.91 16 37 H 0.07 0.94 7.24 -2.39 -0.02 0.92 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 4.15 7.29 -2.39 -0.02 4.13 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 2.33 6.97 -2.39 -0.02 2.32 16 42 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 43 H 0.08 2.84 4.79 -2.38 -0.01 2.83 16 44 H 0.04 1.87 4.65 -2.39 -0.01 1.86 16 45 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 46 H 0.11 0.88 7.60 -2.39 -0.02 0.87 16 Total: -1.00 -80.61 353.33 2.50 -78.11 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.78 Total: 11.46 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 6.18 Total: 3.27 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -4.59 Total: -116.85 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -1.59 Total: -31.67 kcal Atomic # 14 Polarization: 53.96 SS G_CDS: 1.72 Total: 55.69 kcal Total: -80.61 2.50 -78.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949988931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.428 kcal (2) G-P(sol) polarization free energy of solvation -80.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds