Wall clock time and date at job start Tue Mar 31 2020 03:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47668 * 2 1 4 4 C 1.34773 * 120.00076 * 275.19311 * 3 2 1 5 5 O 1.21286 * 119.99790 * 354.71619 * 4 3 2 6 6 C 1.50696 * 119.99832 * 174.71946 * 4 3 2 7 7 H 1.08992 * 109.54633 * 334.79690 * 6 4 3 8 8 C 1.53179 * 109.54347 * 94.97575 * 6 4 3 9 9 C 1.53088 * 109.16804 * 62.88072 * 8 6 4 10 10 O 1.42903 * 109.40991 * 57.61020 * 9 8 6 11 11 C 1.42905 * 114.10052 * 298.84187 * 10 9 8 12 12 C 1.53179 * 109.54166 * 214.61574 * 6 4 3 13 13 H 1.09004 * 109.52158 * 177.21090 * 12 6 4 14 14 C 1.53000 * 109.52130 * 57.02311 * 12 6 4 15 15 C 1.46495 * 119.99584 * 95.19063 * 3 2 1 16 16 C 1.53502 * 114.20802 * 300.00065 * 15 3 2 17 17 N 1.47068 * 87.98510 * 87.71933 * 16 15 3 18 18 C 1.36929 * 136.05934 * 206.86125 * 17 16 15 19 19 H 1.08008 * 120.00083 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00204 * 180.02562 * 18 17 16 21 21 N 1.31615 * 120.00195 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00008 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47151 * 89.99598 * 22 20 18 24 24 H 1.48497 * 109.47277 * 209.99597 * 22 20 18 25 25 H 1.48500 * 109.47333 * 329.99808 * 22 20 18 26 26 C 1.47070 * 87.88376 * 27.12249 * 17 16 15 27 27 H 1.08995 * 109.47601 * 184.96450 * 1 2 3 28 28 H 1.09003 * 109.47068 * 304.97054 * 1 2 3 29 29 H 1.09002 * 109.47233 * 64.96553 * 1 2 3 30 30 H 1.09009 * 109.47178 * 239.99861 * 2 1 3 31 31 H 1.09004 * 109.47275 * 120.00215 * 2 1 3 32 32 H 1.09000 * 109.52261 * 182.79413 * 8 6 4 33 33 H 1.09011 * 109.51722 * 302.91233 * 8 6 4 34 34 H 1.09002 * 109.48218 * 177.59279 * 9 8 6 35 35 H 1.08999 * 109.48507 * 297.61968 * 9 8 6 36 36 H 1.08997 * 109.47977 * 181.14136 * 11 10 9 37 37 H 1.08995 * 109.47766 * 301.16092 * 11 10 9 38 38 H 1.08992 * 109.47164 * 54.95827 * 14 12 6 39 39 H 1.09005 * 109.47049 * 174.95648 * 14 12 6 40 40 H 1.09001 * 109.47117 * 294.95699 * 14 12 6 41 41 H 1.09007 * 113.27995 * 166.93837 * 15 3 2 42 42 H 1.09001 * 113.46811 * 332.93798 * 16 15 3 43 43 H 1.09000 * 113.51982 * 202.51094 * 16 15 3 44 44 H 0.96998 * 120.00686 * 180.02562 * 21 20 18 45 45 H 1.09002 * 113.47067 * 87.65474 * 26 17 16 46 46 H 1.09002 * 113.46838 * 218.10031 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1435 2.0517 -1.1624 5 8 1.9439 1.4831 -2.2149 6 6 2.5313 3.5079 -1.1542 7 1 2.2414 3.9572 -0.2044 8 6 4.0464 3.6357 -1.3402 9 6 4.4341 3.0713 -2.7094 10 8 3.7181 3.7688 -3.7306 11 6 2.2975 3.6456 -3.6353 12 6 1.8223 4.2334 -2.3019 13 1 2.0640 5.2957 -2.2658 14 6 0.3097 4.0471 -2.1676 15 6 2.3708 2.0334 1.2635 16 6 1.2115 2.1341 2.2647 17 7 1.5917 0.8024 2.7596 18 6 0.9506 -0.2434 3.3681 19 1 -0.1053 -0.1767 3.5855 20 6 1.6576 -1.3892 3.7057 21 7 2.9442 -1.4708 3.4404 22 14 0.7828 -2.8161 4.5352 23 1 0.2585 -3.7440 3.5009 24 1 1.7380 -3.5404 5.4115 25 1 -0.3439 -2.2984 5.3524 26 6 2.9650 1.0908 2.3193 27 1 -0.3634 -1.0237 0.0889 28 1 -0.3633 0.5890 0.8421 29 1 -0.3634 0.4349 -0.9311 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.3329 4.6859 -1.2846 33 1 4.5580 3.0766 -0.5566 34 1 5.5054 3.1985 -2.8650 35 1 4.1844 2.0111 -2.7496 36 1 1.8298 4.1865 -4.4579 37 1 2.0197 2.5929 -3.6879 38 1 -0.0110 4.3783 -1.1800 39 1 -0.1982 4.6364 -2.9311 40 1 0.0605 2.9937 -2.2962 41 1 2.9270 2.9612 1.1290 42 1 0.2299 2.1573 1.7913 43 1 1.3420 2.9252 3.0031 44 1 3.4382 -2.2716 3.6759 45 1 3.5634 1.6042 3.0719 46 1 3.4744 0.2269 1.8923 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951700759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:46 Heat of formation + Delta-G solvation = -32.409995 kcal Electronic energy + Delta-G solvation = -26579.602659 eV Core-core repulsion = 23084.992428 eV Total energy + Delta-G solvation = -3494.610231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07539 -40.33760 -38.69384 -35.63458 -35.35356 -34.06023 -33.27359 -31.60974 -29.32121 -27.90644 -26.79746 -26.22980 -25.25538 -24.05794 -23.25068 -22.14718 -21.39766 -19.25099 -18.51687 -18.19305 -17.13116 -17.05737 -16.86929 -16.70078 -16.10465 -15.63784 -15.59776 -15.38260 -14.98873 -14.54695 -14.49217 -14.20950 -13.96210 -13.69019 -13.48151 -13.29056 -13.12574 -12.96325 -12.84870 -12.82326 -12.73834 -12.47850 -12.30659 -12.00111 -11.97942 -11.77920 -11.69401 -11.54343 -11.35807 -11.18575 -10.85807 -10.58272 -9.91730 -9.46797 -8.83589 -7.85562 -5.15578 1.46799 1.48332 1.54883 1.66103 2.08277 2.49690 3.04084 3.36872 3.46863 3.50211 3.67144 3.77411 3.84394 4.00799 4.07206 4.31947 4.35344 4.40106 4.44477 4.53586 4.59115 4.62568 4.67269 4.74328 4.77287 4.84489 4.85967 4.91687 4.96449 4.98208 5.02125 5.11972 5.15772 5.18068 5.28093 5.31812 5.36090 5.39976 5.46316 5.55271 5.74930 5.96805 6.32421 6.67653 6.96807 7.29612 7.66550 8.64803 9.31071 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027445 B = 0.004544 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.972772 B = 6160.452211 C = 6320.613567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.119 3.881 3 N -0.574 5.574 4 C 0.520 3.480 5 O -0.571 6.571 6 C -0.107 4.107 7 H 0.117 0.883 8 C -0.139 4.139 9 C 0.055 3.945 10 O -0.396 6.396 11 C 0.041 3.959 12 C -0.099 4.099 13 H 0.104 0.896 14 C -0.146 4.146 15 C 0.098 3.902 16 C 0.105 3.895 17 N -0.626 5.626 18 C -0.204 4.204 19 H 0.079 0.921 20 C -0.057 4.057 21 N -0.948 5.948 22 Si 0.960 3.040 23 H -0.291 1.291 24 H -0.300 1.300 25 H -0.273 1.273 26 C 0.142 3.858 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.029 0.971 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.137 0.863 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.245 0.755 45 H 0.039 0.961 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 14.204 -9.123 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.004 4.004 3 N -0.304 5.304 4 C 0.311 3.689 5 O -0.452 6.452 6 C -0.129 4.129 7 H 0.135 0.865 8 C -0.177 4.177 9 C -0.022 4.022 10 O -0.315 6.315 11 C -0.035 4.035 12 C -0.118 4.118 13 H 0.122 0.878 14 C -0.203 4.203 15 C -0.008 4.008 16 C -0.021 4.021 17 N -0.352 5.352 18 C -0.333 4.333 19 H 0.097 0.903 20 C -0.250 4.250 21 N -0.597 5.597 22 Si 0.790 3.210 23 H -0.218 1.218 24 H -0.227 1.227 25 H -0.198 1.198 26 C 0.015 3.985 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.047 0.953 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.154 0.846 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.396 13.672 -9.645 16.736 hybrid contribution -0.470 -1.694 1.142 2.096 sum -0.866 11.978 -8.503 14.715 Atomic orbital electron populations 1.21821 0.95630 1.01407 1.00432 1.21229 0.94733 0.82837 1.01622 1.47660 1.63257 1.13545 1.05916 1.21104 0.75645 0.89784 0.82409 1.90521 1.52979 1.70763 1.30902 1.21613 0.97964 0.90796 1.02481 0.86538 1.22147 0.92859 1.04571 0.98136 1.22636 0.97260 0.94799 0.87479 1.87817 1.18860 1.73653 1.51216 1.23194 0.80515 1.02662 0.97178 1.21607 0.95694 1.00596 0.93890 0.87784 1.21773 0.94413 1.01303 1.02856 1.22737 0.98011 0.96745 0.83260 1.23084 0.97223 0.88041 0.93774 1.45815 1.06456 1.12358 1.70562 1.19043 0.92480 0.91751 1.29999 0.90349 1.25313 0.96345 1.00264 1.03121 1.69949 1.07568 1.28322 1.53884 0.85345 0.77413 0.80165 0.78052 1.21803 1.22665 1.19765 1.22439 0.88714 0.95257 0.92064 0.92876 0.92488 0.93804 0.93592 0.89527 0.87370 0.89800 0.87290 0.95303 0.88675 0.91238 0.91487 0.90831 0.94566 0.84611 0.93424 0.91661 0.94575 0.94353 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 10.15 71.98 0.73 -4.26 16 2 C 0.12 4.74 5.33 86.38 0.46 5.20 16 3 N -0.57 -19.34 2.73 -797.12 -2.17 -21.51 16 4 C 0.52 16.02 5.09 87.66 0.45 16.46 16 5 O -0.57 -20.86 11.16 -3.05 -0.03 -20.89 16 6 C -0.11 -2.39 1.80 -11.42 -0.02 -2.41 16 7 H 0.12 2.13 6.30 -2.39 -0.02 2.11 16 8 C -0.14 -2.76 5.51 30.68 0.17 -2.59 16 9 C 0.05 1.33 6.56 72.01 0.47 1.80 16 10 O -0.40 -10.59 10.77 -148.98 -1.60 -12.19 16 11 C 0.04 1.02 5.84 72.08 0.42 1.44 16 12 C -0.10 -2.06 2.68 -10.64 -0.03 -2.09 16 13 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 14 C -0.15 -3.01 8.80 71.98 0.63 -2.38 16 15 C 0.10 3.03 4.25 45.47 0.19 3.22 16 16 C 0.10 3.56 7.82 83.18 0.65 4.21 16 17 N -0.63 -27.97 2.47 -738.47 -1.82 -29.79 16 18 C -0.20 -10.40 10.20 84.03 0.86 -9.54 16 19 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 20 C -0.06 -3.04 5.50 84.86 0.47 -2.57 16 21 N -0.95 -53.72 11.51 21.65 0.25 -53.48 16 22 Si 0.96 44.12 29.55 68.60 2.03 46.15 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.14 5.85 6.41 83.18 0.53 6.39 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 2.17 6.04 -2.39 -0.01 2.15 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.91 7.51 -2.38 -0.02 1.89 16 31 H 0.09 4.15 5.09 -2.39 -0.01 4.14 16 32 H 0.11 1.62 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.62 7.98 -2.38 -0.02 1.60 16 34 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.03 0.87 6.65 -2.39 -0.02 0.85 16 36 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 2.19 5.12 -2.39 -0.01 2.18 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.04 0.96 6.76 -2.39 -0.02 0.94 16 41 H 0.14 3.08 5.86 -2.38 -0.01 3.06 16 42 H 0.05 1.61 6.62 -2.39 -0.02 1.60 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 46 H 0.04 2.09 6.33 -2.39 -0.02 2.07 16 Total: -1.00 -63.26 343.25 3.59 -59.67 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.97 Total: 19.16 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.98 Total: 12.88 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -3.75 Total: -104.78 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.64 Total: -33.08 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -63.26 3.59 -59.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951700759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.257 kcal (2) G-P(sol) polarization free energy of solvation -63.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds