Wall clock time and date at job start Tue Mar 31 2020 03:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 119.99907 * 2 1 4 4 H 1.07995 * 119.99944 * 203.88717 * 3 2 1 5 5 C 1.38815 * 119.99736 * 23.88630 * 3 2 1 6 6 N 1.31611 * 120.00304 * 10.68464 * 5 3 2 7 7 Si 1.86802 * 119.99636 * 190.68866 * 5 3 2 8 8 H 1.48497 * 109.47146 * 359.97438 * 7 5 3 9 9 H 1.48508 * 109.47022 * 119.99863 * 7 5 3 10 10 H 1.48497 * 109.46938 * 239.99763 * 7 5 3 11 11 C 1.46498 * 120.00094 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.88728 * 183.88052 * 11 2 1 13 13 C 1.55155 * 111.04009 * 307.78844 * 11 2 1 14 14 C 1.54327 * 103.01942 * 153.39586 * 13 11 2 15 15 N 1.47018 * 107.26986 * 338.13880 * 14 13 11 16 16 C 1.34783 * 125.65119 * 178.85130 * 15 14 13 17 17 O 1.21283 * 119.99778 * 184.64163 * 16 15 14 18 18 C 1.50699 * 119.99862 * 4.64948 * 16 15 14 19 19 C 1.52994 * 109.47096 * 145.58161 * 18 16 15 20 20 C 1.52997 * 109.47001 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.47131 * 299.99719 * 20 19 18 22 22 O 1.42898 * 109.47058 * 300.00143 * 21 20 19 23 23 C 1.52994 * 109.46948 * 60.00249 * 21 20 19 24 24 C 1.53002 * 109.47319 * 299.99858 * 23 21 20 25 25 C 1.47425 * 108.70189 * 358.58629 * 15 14 13 26 26 H 1.09005 * 109.47265 * 275.02286 * 1 2 3 27 27 H 1.08997 * 109.47253 * 35.02382 * 1 2 3 28 28 H 1.08997 * 109.47258 * 155.02508 * 1 2 3 29 29 H 0.97003 * 120.00361 * 180.02562 * 6 5 3 30 30 H 1.09004 * 110.71476 * 271.95375 * 13 11 2 31 31 H 1.08998 * 110.71687 * 35.04471 * 13 11 2 32 32 H 1.09004 * 109.98952 * 218.66361 * 14 13 11 33 33 H 1.08997 * 109.78113 * 97.49818 * 14 13 11 34 34 H 1.09000 * 109.47064 * 25.57524 * 18 16 15 35 35 H 1.08997 * 109.47193 * 59.99620 * 19 18 16 36 36 H 1.08998 * 109.47133 * 299.99785 * 19 18 16 37 37 H 1.08997 * 109.47210 * 59.99933 * 20 19 18 38 38 H 1.09002 * 109.47454 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.46577 * 180.02562 * 21 20 19 40 40 H 0.96708 * 113.99672 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47133 * 179.97438 * 23 21 20 42 42 H 1.09000 * 109.47684 * 59.99785 * 23 21 20 43 43 H 1.09000 * 109.46683 * 300.00540 * 24 23 21 44 44 H 1.08992 * 109.47659 * 180.02562 * 24 23 21 45 45 H 1.09001 * 110.36710 * 143.19336 * 25 15 14 46 46 H 1.08998 * 110.37238 * 265.40937 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1602 1.2260 -0.3787 5 6 1.5447 2.3366 0.4868 6 7 0.4036 2.2553 1.1375 7 14 2.3502 4.0005 0.2181 8 1 3.6170 3.8212 -0.5357 9 1 1.4329 4.8754 -0.5555 10 1 2.6413 4.6275 1.5324 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0972 0.0694 13 6 1.7076 -2.1943 1.1454 14 6 2.0205 -3.6069 0.6084 15 7 2.1186 -3.5057 -0.8550 16 6 2.4023 -4.5205 -1.6953 17 8 2.5407 -4.3055 -2.8809 18 6 2.5473 -5.9224 -1.1618 19 6 2.0225 -6.9190 -2.1973 20 6 2.1703 -8.3423 -1.6559 21 6 3.6463 -8.6299 -1.3737 22 8 4.3966 -8.4999 -2.5829 23 6 4.1712 -7.6334 -0.3383 24 6 4.0234 -6.2100 -0.8796 25 6 1.8490 -2.1116 -1.2516 26 1 -0.3634 0.0900 1.0238 27 1 -0.3633 0.8415 -0.5898 28 1 -0.3633 -0.9315 -0.4339 29 1 -0.0193 3.0594 1.4774 30 1 2.2604 -1.9971 2.0639 31 1 0.6366 -2.0728 1.3078 32 1 1.2194 -4.2945 0.8796 33 1 2.9672 -3.9566 1.0201 34 1 1.9748 -6.0212 -0.2396 35 1 2.5950 -6.8201 -3.1195 36 1 0.9711 -6.7139 -2.3987 37 1 1.5980 -8.4415 -0.7336 38 1 1.7960 -9.0523 -2.3934 39 1 3.7516 -9.6441 -0.9884 40 1 5.3430 -8.6691 -2.4787 41 1 5.2225 -7.8385 -0.1369 42 1 3.5989 -7.7324 0.5841 43 1 4.5956 -6.1109 -1.8020 44 1 4.3976 -5.5000 -0.1422 45 1 2.4843 -1.8261 -2.0900 46 1 0.7981 -1.9881 -1.5135 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971439224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:37 Heat of formation + Delta-G solvation = -74.338953 kcal Electronic energy + Delta-G solvation = -24981.343220 eV Core-core repulsion = 21484.914812 eV Total energy + Delta-G solvation = -3496.428408 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.32220 -38.80471 -37.32813 -35.07247 -34.78858 -31.72315 -31.04369 -30.33568 -29.63721 -27.82243 -26.05959 -24.31757 -22.95430 -22.65146 -22.17472 -20.15570 -19.30434 -18.77770 -17.27669 -17.03021 -16.71786 -16.17610 -15.72920 -15.05141 -14.97299 -14.54943 -14.07220 -13.67827 -13.47397 -13.34021 -13.17922 -12.82792 -12.62589 -12.52474 -12.43789 -12.28286 -11.99217 -11.89812 -11.48608 -11.32162 -11.25287 -10.93431 -10.82124 -10.65868 -10.49456 -10.48291 -10.40715 -10.22567 -10.03658 -9.90764 -9.84463 -9.39044 -8.61044 -8.29282 -6.80553 -5.77281 -3.26002 2.85277 3.24328 3.35809 3.43582 3.45778 3.99676 4.39692 4.45386 4.47381 4.60010 4.87904 4.88422 5.01288 5.03884 5.13990 5.24006 5.27222 5.29873 5.36787 5.50172 5.53368 5.56052 5.61484 5.73095 5.75086 5.79893 5.89405 5.97424 6.00769 6.04101 6.09102 6.31760 6.35772 6.39283 6.57440 6.66789 6.77061 6.88137 7.34638 7.42108 7.69313 7.77607 7.84904 8.34277 8.44166 9.18294 9.79996 10.28897 11.27070 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.036540 B = 0.003018 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.101282 B = 9274.657048 C = 9346.658556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.174 3.826 12 H 0.077 0.923 13 C -0.151 4.151 14 C 0.104 3.896 15 N -0.614 5.614 16 C 0.529 3.471 17 O -0.545 6.545 18 C -0.099 4.099 19 C -0.099 4.099 20 C -0.111 4.111 21 C 0.104 3.896 22 O -0.561 6.561 23 C -0.149 4.149 24 C -0.102 4.102 25 C 0.084 3.916 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.000 1.000 29 H 0.253 0.747 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.374 0.626 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.930 -21.859 0.394 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.095 0.905 13 C -0.191 4.191 14 C -0.020 4.020 15 N -0.348 5.348 16 C 0.317 3.683 17 O -0.423 6.423 18 C -0.121 4.121 19 C -0.137 4.137 20 C -0.149 4.149 21 C 0.045 3.955 22 O -0.366 6.366 23 C -0.187 4.187 24 C -0.140 4.140 25 C -0.041 4.041 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.221 0.779 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.299 -21.467 -0.458 21.898 hybrid contribution 0.770 0.847 0.425 1.221 sum 5.068 -20.620 -0.033 21.234 Atomic orbital electron populations 1.20811 0.82435 0.95558 0.99579 1.43813 1.01882 0.99871 1.85062 1.19276 0.98949 0.85517 1.35141 0.91227 1.25060 0.97679 0.98681 0.97941 1.70064 1.18449 1.27354 1.39184 0.86151 0.78754 0.84038 0.77402 1.20232 1.21556 1.21672 1.21404 0.96349 0.85836 0.90094 0.90457 1.23207 1.02829 0.92669 1.00419 1.22040 1.00416 0.99274 0.80239 1.48551 1.69020 1.09801 1.07411 1.20264 0.76316 0.85899 0.85804 1.90680 1.50919 1.84574 1.16097 1.21277 0.98548 0.92070 1.00193 1.21306 1.01282 0.92207 0.98916 1.21555 0.93950 0.97612 1.01743 1.21788 0.92333 0.96615 0.84783 1.86575 1.23289 1.93806 1.32906 1.22241 1.01594 0.95767 0.99108 1.21337 0.94447 0.96077 1.02146 1.23010 1.01085 0.79511 1.00488 0.94843 0.93840 0.98161 0.93717 0.90535 0.90529 0.92182 0.91985 0.89679 0.89708 0.91922 0.90684 0.91025 0.92895 0.77895 0.91403 0.90822 0.90491 0.91611 0.91051 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.55 59.85 0.45 4.30 16 2 N -0.59 -14.30 2.96 -171.03 -0.51 -14.81 16 3 C -0.26 -7.00 9.61 -15.06 -0.14 -7.15 16 4 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 5 C 0.00 0.14 5.15 -17.43 -0.09 0.05 16 6 N -0.91 -25.85 10.64 55.49 0.59 -25.26 16 7 Si 0.91 21.62 29.57 -169.99 -5.03 16.60 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 C 0.17 3.47 3.53 -65.78 -0.23 3.24 16 12 H 0.08 1.57 7.96 -51.93 -0.41 1.16 16 13 C -0.15 -2.49 6.50 -24.90 -0.16 -2.65 16 14 C 0.10 1.40 6.16 -3.06 -0.02 1.38 16 15 N -0.61 -9.96 3.33 -170.52 -0.57 -10.52 16 16 C 0.53 8.61 6.85 -10.98 -0.08 8.54 16 17 O -0.55 -11.02 16.49 5.56 0.09 -10.93 16 18 C -0.10 -1.18 2.15 -91.77 -0.20 -1.37 16 19 C -0.10 -1.15 4.71 -26.74 -0.13 -1.28 16 20 C -0.11 -0.96 5.66 -26.73 -0.15 -1.11 16 21 C 0.10 0.81 3.77 -26.73 -0.10 0.70 16 22 O -0.56 -5.11 11.97 -35.23 -0.42 -5.53 16 23 C -0.15 -1.09 5.64 -26.73 -0.15 -1.24 16 24 C -0.10 -1.05 5.04 -26.73 -0.13 -1.18 16 25 C 0.08 1.58 6.49 -2.53 -0.02 1.57 16 26 H 0.03 0.86 7.33 -51.93 -0.38 0.48 16 27 H 0.04 1.13 7.33 -51.93 -0.38 0.75 16 28 H 0.00 0.00 6.38 -51.93 -0.33 -0.33 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.08 1.34 7.00 -51.93 -0.36 0.98 16 32 H 0.06 0.70 7.73 -51.93 -0.40 0.29 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.87 6.98 -51.93 -0.36 0.50 16 35 H 0.08 1.20 7.39 -51.93 -0.38 0.82 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.37 1.92 9.08 45.56 0.41 2.34 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.93 7.68 -51.93 -0.40 0.53 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 1.46 7.99 -51.93 -0.42 1.04 16 46 H 0.07 1.32 6.43 -51.93 -0.33 0.99 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -32.22 353.81 -8.76 -40.98 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.10 Total: 0.36 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.15 Total: 3.78 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.48 Total: -50.59 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.33 Total: -16.46 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.22 -8.76 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971439224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.357 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds