Wall clock time and date at job start Tue Mar 31 2020 03:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 119.99907 * 2 1 4 4 H 1.07995 * 119.99944 * 203.88717 * 3 2 1 5 5 C 1.38815 * 119.99736 * 23.88630 * 3 2 1 6 6 N 1.31611 * 120.00304 * 10.68464 * 5 3 2 7 7 Si 1.86802 * 119.99636 * 190.68866 * 5 3 2 8 8 H 1.48497 * 109.47146 * 359.97438 * 7 5 3 9 9 H 1.48508 * 109.47022 * 119.99863 * 7 5 3 10 10 H 1.48497 * 109.46938 * 239.99763 * 7 5 3 11 11 C 1.46498 * 120.00094 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.88728 * 183.88052 * 11 2 1 13 13 C 1.55155 * 111.04009 * 307.78844 * 11 2 1 14 14 C 1.54327 * 103.01942 * 153.39586 * 13 11 2 15 15 N 1.47018 * 107.26986 * 338.13880 * 14 13 11 16 16 C 1.34783 * 125.65119 * 178.85130 * 15 14 13 17 17 O 1.21283 * 119.99778 * 184.64163 * 16 15 14 18 18 C 1.50699 * 119.99862 * 4.64948 * 16 15 14 19 19 C 1.52994 * 109.47096 * 145.58161 * 18 16 15 20 20 C 1.52997 * 109.47001 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.47131 * 299.99719 * 20 19 18 22 22 O 1.42898 * 109.47058 * 300.00143 * 21 20 19 23 23 C 1.52994 * 109.46948 * 60.00249 * 21 20 19 24 24 C 1.53002 * 109.47319 * 299.99858 * 23 21 20 25 25 C 1.47425 * 108.70189 * 358.58629 * 15 14 13 26 26 H 1.09005 * 109.47265 * 275.02286 * 1 2 3 27 27 H 1.08997 * 109.47253 * 35.02382 * 1 2 3 28 28 H 1.08997 * 109.47258 * 155.02508 * 1 2 3 29 29 H 0.97003 * 120.00361 * 180.02562 * 6 5 3 30 30 H 1.09004 * 110.71476 * 271.95375 * 13 11 2 31 31 H 1.08998 * 110.71687 * 35.04471 * 13 11 2 32 32 H 1.09004 * 109.98952 * 218.66361 * 14 13 11 33 33 H 1.08997 * 109.78113 * 97.49818 * 14 13 11 34 34 H 1.09000 * 109.47064 * 25.57524 * 18 16 15 35 35 H 1.08997 * 109.47193 * 59.99620 * 19 18 16 36 36 H 1.08998 * 109.47133 * 299.99785 * 19 18 16 37 37 H 1.08997 * 109.47210 * 59.99933 * 20 19 18 38 38 H 1.09002 * 109.47454 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.46577 * 180.02562 * 21 20 19 40 40 H 0.96708 * 113.99672 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47133 * 179.97438 * 23 21 20 42 42 H 1.09000 * 109.47684 * 59.99785 * 23 21 20 43 43 H 1.09000 * 109.46683 * 300.00540 * 24 23 21 44 44 H 1.08992 * 109.47659 * 180.02562 * 24 23 21 45 45 H 1.09001 * 110.36710 * 143.19336 * 25 15 14 46 46 H 1.08998 * 110.37238 * 265.40937 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1602 1.2260 -0.3787 5 6 1.5447 2.3366 0.4868 6 7 0.4036 2.2553 1.1375 7 14 2.3502 4.0005 0.2181 8 1 3.6170 3.8212 -0.5357 9 1 1.4329 4.8754 -0.5555 10 1 2.6413 4.6275 1.5324 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0972 0.0694 13 6 1.7076 -2.1943 1.1454 14 6 2.0205 -3.6069 0.6084 15 7 2.1186 -3.5057 -0.8550 16 6 2.4023 -4.5205 -1.6953 17 8 2.5407 -4.3055 -2.8809 18 6 2.5473 -5.9224 -1.1618 19 6 2.0225 -6.9190 -2.1973 20 6 2.1703 -8.3423 -1.6559 21 6 3.6463 -8.6299 -1.3737 22 8 4.3966 -8.4999 -2.5829 23 6 4.1712 -7.6334 -0.3383 24 6 4.0234 -6.2100 -0.8796 25 6 1.8490 -2.1116 -1.2516 26 1 -0.3634 0.0900 1.0238 27 1 -0.3633 0.8415 -0.5898 28 1 -0.3633 -0.9315 -0.4339 29 1 -0.0193 3.0594 1.4774 30 1 2.2604 -1.9971 2.0639 31 1 0.6366 -2.0728 1.3078 32 1 1.2194 -4.2945 0.8796 33 1 2.9672 -3.9566 1.0201 34 1 1.9748 -6.0212 -0.2396 35 1 2.5950 -6.8201 -3.1195 36 1 0.9711 -6.7139 -2.3987 37 1 1.5980 -8.4415 -0.7336 38 1 1.7960 -9.0523 -2.3934 39 1 3.7516 -9.6441 -0.9884 40 1 5.3430 -8.6691 -2.4787 41 1 5.2225 -7.8385 -0.1369 42 1 3.5989 -7.7324 0.5841 43 1 4.5956 -6.1109 -1.8020 44 1 4.3976 -5.5000 -0.1422 45 1 2.4843 -1.8261 -2.0900 46 1 0.7981 -1.9881 -1.5135 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971439224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:36 Heat of formation + Delta-G solvation = -96.576882 kcal Electronic energy + Delta-G solvation = -24982.307529 eV Core-core repulsion = 21484.914812 eV Total energy + Delta-G solvation = -3497.392716 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47855 -39.79093 -38.70239 -36.56396 -35.87761 -33.49394 -31.83413 -31.48842 -30.86604 -29.28648 -28.07574 -25.72205 -24.16785 -23.65304 -23.34326 -21.04886 -20.83322 -19.94016 -18.96856 -18.29091 -17.58131 -17.48408 -16.93827 -16.35771 -16.22830 -15.66904 -15.47218 -15.06918 -14.88627 -14.44497 -14.36379 -14.35005 -13.94170 -13.82754 -13.49796 -13.17914 -13.08192 -12.98159 -12.96679 -12.83016 -12.50772 -12.40837 -12.29100 -12.12998 -12.09028 -11.93033 -11.85327 -11.56379 -11.38849 -11.17044 -10.79165 -10.67798 -10.48168 -9.66745 -8.79620 -7.85369 -5.36009 1.45316 1.47452 1.57268 1.58799 1.96029 2.49729 3.26232 3.39293 3.53025 3.55505 3.75969 3.81586 3.92596 4.01754 4.14224 4.18225 4.25321 4.29058 4.31396 4.43456 4.44097 4.49007 4.59731 4.68728 4.76261 4.80544 4.88351 4.94733 4.99607 5.08091 5.10320 5.17274 5.21873 5.26519 5.27453 5.29118 5.32319 5.42343 5.52143 5.62484 5.70258 6.30331 6.57352 7.01441 7.11709 7.15099 7.81904 8.26092 9.17307 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.036540 B = 0.003018 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.101282 B = 9274.657048 C = 9346.658556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.602 5.602 3 C -0.270 4.270 4 H 0.068 0.932 5 C -0.046 4.046 6 N -0.933 5.933 7 Si 0.968 3.032 8 H -0.269 1.269 9 H -0.292 1.292 10 H -0.288 1.288 11 C 0.167 3.833 12 H 0.071 0.929 13 C -0.140 4.140 14 C 0.109 3.891 15 N -0.614 5.614 16 C 0.522 3.478 17 O -0.595 6.595 18 C -0.089 4.089 19 C -0.098 4.098 20 C -0.109 4.109 21 C 0.099 3.901 22 O -0.588 6.588 23 C -0.141 4.141 24 C -0.100 4.100 25 C 0.094 3.906 26 H 0.014 0.986 27 H 0.012 0.988 28 H 0.026 0.974 29 H 0.249 0.751 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.389 0.611 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -24.335 2.308 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.324 5.324 3 C -0.400 4.400 4 H 0.086 0.914 5 C -0.242 4.242 6 N -0.579 5.579 7 Si 0.797 3.203 8 H -0.194 1.194 9 H -0.219 1.219 10 H -0.215 1.215 11 C 0.058 3.942 12 H 0.090 0.910 13 C -0.180 4.180 14 C -0.013 4.013 15 N -0.347 5.347 16 C 0.313 3.687 17 O -0.476 6.476 18 C -0.110 4.110 19 C -0.136 4.136 20 C -0.147 4.147 21 C 0.041 3.959 22 O -0.396 6.396 23 C -0.178 4.178 24 C -0.138 4.138 25 C -0.031 4.031 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.238 0.762 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.173 -23.991 1.479 24.587 hybrid contribution 0.532 1.589 -0.254 1.694 sum 5.705 -22.403 1.225 23.150 Atomic orbital electron populations 1.20499 0.82590 0.95471 0.97952 1.43964 1.02064 1.00859 1.85504 1.19553 0.98999 0.86909 1.34498 0.91410 1.25766 0.98406 1.01756 0.98231 1.70204 1.19646 1.27798 1.40285 0.85189 0.77994 0.80003 0.77141 1.19387 1.21914 1.21478 1.21516 0.95708 0.84917 0.92064 0.91042 1.23046 1.02155 0.93531 0.99277 1.22207 1.03324 0.97793 0.77939 1.48642 1.68758 1.08435 1.08891 1.21228 0.74873 0.87429 0.85166 1.90657 1.53008 1.85456 1.18466 1.21340 1.00309 0.88400 1.00953 1.21257 1.00030 0.94562 0.97738 1.21606 0.95405 0.94938 1.02716 1.21933 0.91409 0.98090 0.84457 1.86550 1.24771 1.94037 1.34195 1.22225 1.03184 0.93015 0.99405 1.21340 0.92599 0.98640 1.01263 1.22625 0.99674 0.81596 0.99229 0.96728 0.96916 0.95587 0.94121 0.89557 0.91485 0.88873 0.88865 0.86641 0.93289 0.92768 0.88056 0.91250 0.90406 0.76193 0.89666 0.88641 0.93169 0.91021 0.93494 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.79 7.55 127.77 0.97 9.76 16 2 N -0.60 -29.82 2.96 -695.03 -2.06 -31.88 16 3 C -0.27 -14.76 9.61 84.03 0.81 -13.96 16 4 H 0.07 3.65 7.85 -2.91 -0.02 3.63 16 5 C -0.05 -2.55 5.15 84.86 0.44 -2.11 16 6 N -0.93 -54.24 10.64 21.65 0.23 -54.01 16 7 Si 0.97 44.97 29.57 68.60 2.03 47.00 16 8 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 9 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 11 C 0.17 6.63 3.53 46.38 0.16 6.79 16 12 H 0.07 2.90 7.96 -2.39 -0.02 2.88 16 13 C -0.14 -4.33 6.50 31.78 0.21 -4.12 16 14 C 0.11 2.53 6.16 86.73 0.53 3.07 16 15 N -0.61 -19.04 3.33 -811.78 -2.70 -21.74 16 16 C 0.52 16.65 6.85 87.66 0.60 17.25 16 17 O -0.60 -24.86 16.49 -3.04 -0.05 -24.91 16 18 C -0.09 -1.89 2.15 -11.54 -0.02 -1.92 16 19 C -0.10 -2.17 4.71 30.59 0.14 -2.03 16 20 C -0.11 -1.58 5.66 30.59 0.17 -1.41 16 21 C 0.10 1.21 3.77 30.59 0.12 1.33 16 22 O -0.59 -9.83 11.97 -148.98 -1.78 -11.62 16 23 C -0.14 -1.46 5.64 30.59 0.17 -1.29 16 24 C -0.10 -1.80 5.04 30.60 0.15 -1.64 16 25 C 0.09 3.61 6.49 86.86 0.56 4.18 16 26 H 0.01 0.76 7.33 -2.38 -0.02 0.74 16 27 H 0.01 0.66 7.33 -2.39 -0.02 0.64 16 28 H 0.03 1.11 6.38 -2.39 -0.02 1.09 16 29 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.22 7.00 -2.39 -0.02 2.21 16 32 H 0.09 1.66 7.73 -2.39 -0.02 1.64 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.12 1.78 6.98 -2.39 -0.02 1.77 16 35 H 0.05 1.43 7.39 -2.39 -0.02 1.42 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.39 3.37 9.08 -74.05 -0.67 2.70 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.05 1.17 7.68 -2.39 -0.02 1.15 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.05 2.00 7.99 -2.39 -0.02 1.98 16 46 H 0.05 2.19 6.43 -2.39 -0.02 2.17 16 Total: -1.00 -73.31 353.81 0.97 -72.35 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.29 Total: 10.92 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 5.01 Total: 13.89 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -4.53 Total: -107.63 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.83 Total: -36.53 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -73.31 0.97 -72.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971439224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.231 kcal (2) G-P(sol) polarization free energy of solvation -73.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds