Wall clock time and date at job start Tue Mar 31 2020 03:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47126 * 2 1 4 4 C 1.42894 * 113.99865 * 179.97438 * 3 2 1 5 5 C 1.53785 * 113.61196 * 150.00160 * 4 3 2 6 6 C 1.53786 * 87.08291 * 89.11635 * 5 4 3 7 7 C 1.50694 * 113.61348 * 139.97942 * 6 5 4 8 8 O 1.21279 * 120.00653 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99844 * 179.97438 * 7 6 5 10 10 C 1.47419 * 125.64792 * 359.97438 * 9 7 6 11 11 C 1.54911 * 104.83211 * 155.90494 * 10 9 7 12 12 C 1.55158 * 101.58031 * 37.01062 * 11 10 9 13 13 H 1.09001 * 110.71798 * 83.04023 * 12 11 10 14 14 N 1.46502 * 110.71988 * 206.13343 * 12 11 10 15 15 C 1.46499 * 119.99769 * 58.54339 * 14 12 11 16 16 C 1.36933 * 120.00064 * 238.55020 * 14 12 11 17 17 H 1.08007 * 119.99648 * 327.78517 * 16 14 12 18 18 C 1.38808 * 120.00431 * 147.78627 * 16 14 12 19 19 N 1.31620 * 120.00076 * 154.16086 * 18 16 14 20 20 Si 1.86803 * 120.00010 * 334.16806 * 18 16 14 21 21 H 1.48500 * 109.47371 * 95.21086 * 20 18 16 22 22 H 1.48499 * 109.47120 * 215.21303 * 20 18 16 23 23 H 1.48507 * 109.46803 * 335.21370 * 20 18 16 24 24 C 1.47018 * 125.64919 * 180.02562 * 9 7 6 25 25 C 1.53778 * 87.07856 * 25.43068 * 6 5 4 26 26 H 1.09000 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46993 * 300.00044 * 1 2 3 28 28 H 1.08996 * 109.47476 * 59.99873 * 1 2 3 29 29 H 1.08999 * 109.46993 * 239.99956 * 2 1 3 30 30 H 1.09000 * 109.47136 * 119.99771 * 2 1 3 31 31 H 1.08996 * 112.91016 * 18.75474 * 4 3 2 32 32 H 1.09001 * 113.61714 * 334.56866 * 5 4 3 33 33 H 1.09000 * 113.61423 * 203.66319 * 5 4 3 34 34 H 1.08998 * 113.60977 * 270.80187 * 6 5 4 35 35 H 1.09008 * 110.36549 * 37.06813 * 10 9 7 36 36 H 1.08994 * 110.46251 * 274.79474 * 10 9 7 37 37 H 1.08999 * 111.00392 * 278.93821 * 11 10 9 38 38 H 1.09000 * 111.00218 * 155.08419 * 11 10 9 39 39 H 1.09008 * 109.46934 * 95.43184 * 15 14 12 40 40 H 1.08992 * 109.47426 * 335.43416 * 15 14 12 41 41 H 1.09004 * 109.47105 * 215.42708 * 15 14 12 42 42 H 0.97004 * 119.99886 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.88155 * 61.60640 * 24 9 7 44 44 H 1.09005 * 109.88415 * 300.44436 * 24 9 7 45 45 H 1.09004 * 113.61516 * 89.11650 * 25 6 5 46 46 H 1.09000 * 113.61868 * 220.01802 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.9488 2.7251 -0.7039 6 6 3.8390 3.4328 0.6570 7 6 4.9834 4.3704 0.9439 8 8 5.8742 4.5063 0.1322 9 7 5.0164 5.0589 2.1022 10 6 4.0036 4.9907 3.1713 11 6 4.7545 5.4194 4.4566 12 6 5.6975 6.5249 3.9125 13 1 5.1751 7.4793 3.8467 14 7 6.8920 6.6467 4.7519 15 6 7.7692 5.4902 4.9497 16 6 7.1883 7.8414 5.3517 17 1 6.9259 8.7695 4.8656 18 6 7.8260 7.8598 6.5845 19 7 8.5538 8.8995 6.9335 20 14 7.6514 6.4090 7.7482 21 1 8.8033 5.4891 7.5688 22 1 7.6229 6.8992 9.1497 23 1 6.3891 5.6853 7.4511 24 6 6.0677 6.0029 2.5082 25 6 4.0018 2.0466 1.3025 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9290 0.5458 -0.3219 32 1 3.2646 3.1172 -1.4563 33 1 4.9724 2.6343 -1.0674 34 1 2.8645 3.8873 0.8354 35 1 3.6276 3.9726 3.2733 36 1 3.1836 5.6781 2.9638 37 1 5.3251 4.5885 4.8713 38 1 4.0635 5.8244 5.1960 39 1 8.5924 5.5324 4.2363 40 1 7.2014 4.5728 4.7953 41 1 8.1669 5.5051 5.9645 42 1 8.9997 8.9122 7.7949 43 1 6.1123 6.8335 1.8038 44 1 7.0303 5.4927 2.5443 45 1 5.0399 1.7702 1.4874 46 1 3.3603 1.8907 2.1698 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971486271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:12 Heat of formation + Delta-G solvation = -23.745810 kcal Electronic energy + Delta-G solvation = -24611.206132 eV Core-core repulsion = 21116.971608 eV Total energy + Delta-G solvation = -3494.234524 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.57397 -39.03464 -37.57071 -35.98278 -34.96262 -31.84840 -31.26143 -30.20199 -28.54909 -26.45527 -25.98637 -25.89968 -23.43354 -23.19202 -22.44364 -20.44787 -19.33457 -18.92903 -17.42426 -17.03584 -16.52431 -16.27432 -15.95436 -15.78205 -15.21356 -14.78395 -14.30339 -14.07567 -13.58415 -13.21489 -13.16963 -13.10180 -13.02214 -12.62585 -12.53041 -12.41445 -12.22928 -11.95067 -11.82635 -11.74124 -11.58397 -11.44572 -11.02047 -10.88718 -10.86440 -10.62913 -10.56029 -10.20580 -9.98566 -9.82112 -9.56071 -9.50196 -8.54328 -8.38780 -6.99903 -6.05174 -3.40901 2.75053 3.15995 3.24849 3.28128 3.43610 3.47728 4.25186 4.35296 4.47903 4.52354 4.57116 4.71056 4.80974 4.83815 4.96897 5.00521 5.03122 5.06767 5.19535 5.33311 5.41473 5.44677 5.49585 5.53343 5.54496 5.67548 5.73369 5.74109 5.78475 5.85781 5.89041 6.01248 6.10443 6.21618 6.32080 6.41964 6.50009 6.60444 6.70740 6.77133 6.93778 7.74723 7.93702 8.28593 8.34812 8.89062 9.64871 10.01785 11.10292 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028239 B = 0.003131 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.288926 B = 8940.482341 C = 9417.528697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.367 6.367 4 C 0.064 3.936 5 C -0.116 4.116 6 C -0.124 4.124 7 C 0.533 3.467 8 O -0.547 6.547 9 N -0.611 5.611 10 C 0.101 3.899 11 C -0.157 4.157 12 C 0.172 3.828 13 H 0.088 0.912 14 N -0.597 5.597 15 C 0.110 3.890 16 C -0.274 4.274 17 H 0.083 0.917 18 C 0.034 3.966 19 N -0.894 5.894 20 Si 0.882 3.118 21 H -0.287 1.287 22 H -0.303 1.303 23 H -0.271 1.271 24 C 0.089 3.911 25 C -0.140 4.140 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.021 0.979 40 H 0.035 0.965 41 H 0.040 0.960 42 H 0.264 0.736 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 -17.800 -11.715 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.286 6.286 4 C 0.006 3.994 5 C -0.154 4.154 6 C -0.145 4.145 7 C 0.321 3.679 8 O -0.425 6.425 9 N -0.345 5.345 10 C -0.022 4.022 11 C -0.197 4.197 12 C 0.063 3.937 13 H 0.106 0.894 14 N -0.319 5.319 15 C -0.035 4.035 16 C -0.401 4.401 17 H 0.101 0.899 18 C -0.166 4.166 19 N -0.535 5.535 20 Si 0.713 3.287 21 H -0.215 1.215 22 H -0.231 1.231 23 H -0.196 1.196 24 C -0.035 4.035 25 C -0.178 4.178 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.562 -17.484 -12.069 25.757 hybrid contribution 0.108 -0.958 0.957 1.359 sum -14.454 -18.442 -11.112 25.933 Atomic orbital electron populations 1.21750 0.93682 1.02263 1.03236 1.22540 0.95591 0.83775 1.00126 1.87893 1.19717 1.26399 1.94560 1.23012 0.81523 0.98274 0.96588 1.23115 1.02701 0.93823 0.95740 1.22637 0.98320 0.94518 0.99042 1.20152 0.87296 0.80292 0.80163 1.90674 1.39522 1.66005 1.46339 1.48529 1.25096 1.43287 1.17589 1.22338 0.91406 1.01139 0.87357 1.23431 0.99502 1.00975 0.95827 1.21456 0.87633 0.96688 0.87937 0.89358 1.44038 1.22286 1.09673 1.55861 1.21318 0.93635 0.89240 0.99276 1.18797 1.37170 0.84314 0.99866 0.89935 1.25328 0.97723 0.96455 0.97137 1.69914 1.29805 1.31533 1.22255 0.86900 0.78466 0.83063 0.80239 1.21544 1.23143 1.19613 1.22650 0.91021 0.91890 0.97982 1.23373 1.02166 0.94098 0.98202 0.91114 0.91753 0.91826 0.93306 0.93281 0.90435 0.90158 0.87561 0.86811 0.91196 0.91423 0.90912 0.90054 0.96116 0.94626 0.94200 0.92620 0.91787 0.91172 0.88844 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.40 6.50 37.16 0.24 0.64 16 3 O -0.37 -3.53 10.27 -35.23 -0.36 -3.89 16 4 C 0.06 0.58 4.37 -25.92 -0.11 0.47 16 5 C -0.12 -1.23 7.24 -25.91 -0.19 -1.42 16 6 C -0.12 -1.43 3.07 -90.96 -0.28 -1.71 16 7 C 0.53 8.23 7.37 -10.99 -0.08 8.15 16 8 O -0.55 -10.42 16.23 5.56 0.09 -10.33 16 9 N -0.61 -9.42 3.33 -170.53 -0.57 -9.98 16 10 C 0.10 1.29 6.66 -2.53 -0.02 1.27 16 11 C -0.16 -2.45 6.60 -24.58 -0.16 -2.61 16 12 C 0.17 3.24 3.44 -66.10 -0.23 3.01 16 13 H 0.09 1.67 7.95 -51.93 -0.41 1.26 16 14 N -0.60 -13.81 2.58 -171.39 -0.44 -14.25 16 15 C 0.11 2.39 8.32 59.85 0.50 2.89 16 16 C -0.27 -7.47 9.88 -15.06 -0.15 -7.62 16 17 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 18 C 0.03 0.98 5.29 -17.43 -0.09 0.88 16 19 N -0.89 -26.98 13.97 55.49 0.78 -26.20 16 20 Si 0.88 21.88 25.06 -169.99 -4.26 17.62 16 21 H -0.29 -6.98 6.64 56.52 0.38 -6.61 16 22 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.09 1.59 6.50 -3.07 -0.02 1.57 16 25 C -0.14 -1.37 7.04 -25.92 -0.18 -1.56 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.11 1.22 7.43 -51.93 -0.39 0.83 16 34 H 0.11 1.22 8.09 -51.93 -0.42 0.80 16 35 H 0.07 0.75 7.23 -51.92 -0.38 0.38 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.20 6.36 -51.93 -0.33 0.87 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.02 0.45 8.06 -51.92 -0.42 0.03 16 40 H 0.04 0.68 6.37 -51.93 -0.33 0.34 16 41 H 0.04 0.94 2.63 -51.93 -0.14 0.80 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.07 1.38 6.90 -51.93 -0.36 1.02 16 45 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 46 H 0.08 0.74 8.05 -51.93 -0.42 0.32 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -32.14 359.54 -7.54 -39.69 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.81 Total: -1.51 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.39 Total: 3.45 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.23 Total: -50.44 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.27 Total: -14.22 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.26 Total: 17.62 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.14 -7.54 -39.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971486271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.940 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds