Wall clock time and date at job start Tue Mar 31 2020 03:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47126 * 2 1 4 4 C 1.42894 * 113.99865 * 179.97438 * 3 2 1 5 5 C 1.53785 * 113.61196 * 150.00160 * 4 3 2 6 6 C 1.53786 * 87.08291 * 89.11635 * 5 4 3 7 7 C 1.50694 * 113.61348 * 139.97942 * 6 5 4 8 8 O 1.21279 * 120.00653 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99844 * 179.97438 * 7 6 5 10 10 C 1.47419 * 125.64792 * 359.97438 * 9 7 6 11 11 C 1.54911 * 104.83211 * 155.90494 * 10 9 7 12 12 C 1.55158 * 101.58031 * 37.01062 * 11 10 9 13 13 H 1.09001 * 110.71798 * 83.04023 * 12 11 10 14 14 N 1.46502 * 110.71988 * 206.13343 * 12 11 10 15 15 C 1.46499 * 119.99769 * 58.54339 * 14 12 11 16 16 C 1.36933 * 120.00064 * 238.55020 * 14 12 11 17 17 H 1.08007 * 119.99648 * 327.78517 * 16 14 12 18 18 C 1.38808 * 120.00431 * 147.78627 * 16 14 12 19 19 N 1.31620 * 120.00076 * 154.16086 * 18 16 14 20 20 Si 1.86803 * 120.00010 * 334.16806 * 18 16 14 21 21 H 1.48500 * 109.47371 * 95.21086 * 20 18 16 22 22 H 1.48499 * 109.47120 * 215.21303 * 20 18 16 23 23 H 1.48507 * 109.46803 * 335.21370 * 20 18 16 24 24 C 1.47018 * 125.64919 * 180.02562 * 9 7 6 25 25 C 1.53778 * 87.07856 * 25.43068 * 6 5 4 26 26 H 1.09000 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46993 * 300.00044 * 1 2 3 28 28 H 1.08996 * 109.47476 * 59.99873 * 1 2 3 29 29 H 1.08999 * 109.46993 * 239.99956 * 2 1 3 30 30 H 1.09000 * 109.47136 * 119.99771 * 2 1 3 31 31 H 1.08996 * 112.91016 * 18.75474 * 4 3 2 32 32 H 1.09001 * 113.61714 * 334.56866 * 5 4 3 33 33 H 1.09000 * 113.61423 * 203.66319 * 5 4 3 34 34 H 1.08998 * 113.60977 * 270.80187 * 6 5 4 35 35 H 1.09008 * 110.36549 * 37.06813 * 10 9 7 36 36 H 1.08994 * 110.46251 * 274.79474 * 10 9 7 37 37 H 1.08999 * 111.00392 * 278.93821 * 11 10 9 38 38 H 1.09000 * 111.00218 * 155.08419 * 11 10 9 39 39 H 1.09008 * 109.46934 * 95.43184 * 15 14 12 40 40 H 1.08992 * 109.47426 * 335.43416 * 15 14 12 41 41 H 1.09004 * 109.47105 * 215.42708 * 15 14 12 42 42 H 0.97004 * 119.99886 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.88155 * 61.60640 * 24 9 7 44 44 H 1.09005 * 109.88415 * 300.44436 * 24 9 7 45 45 H 1.09004 * 113.61516 * 89.11650 * 25 6 5 46 46 H 1.09000 * 113.61868 * 220.01802 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.9488 2.7251 -0.7039 6 6 3.8390 3.4328 0.6570 7 6 4.9834 4.3704 0.9439 8 8 5.8742 4.5063 0.1322 9 7 5.0164 5.0589 2.1022 10 6 4.0036 4.9907 3.1713 11 6 4.7545 5.4194 4.4566 12 6 5.6975 6.5249 3.9125 13 1 5.1751 7.4793 3.8467 14 7 6.8920 6.6467 4.7519 15 6 7.7692 5.4902 4.9497 16 6 7.1883 7.8414 5.3517 17 1 6.9259 8.7695 4.8656 18 6 7.8260 7.8598 6.5845 19 7 8.5538 8.8995 6.9335 20 14 7.6514 6.4090 7.7482 21 1 8.8033 5.4891 7.5688 22 1 7.6229 6.8992 9.1497 23 1 6.3891 5.6853 7.4511 24 6 6.0677 6.0029 2.5082 25 6 4.0018 2.0466 1.3025 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9290 0.5458 -0.3219 32 1 3.2646 3.1172 -1.4563 33 1 4.9724 2.6343 -1.0674 34 1 2.8645 3.8873 0.8354 35 1 3.6276 3.9726 3.2733 36 1 3.1836 5.6781 2.9638 37 1 5.3251 4.5885 4.8713 38 1 4.0635 5.8244 5.1960 39 1 8.5924 5.5324 4.2363 40 1 7.2014 4.5728 4.7953 41 1 8.1669 5.5051 5.9645 42 1 8.9997 8.9122 7.7949 43 1 6.1123 6.8335 1.8038 44 1 7.0303 5.4927 2.5443 45 1 5.0399 1.7702 1.4874 46 1 3.3603 1.8907 2.1698 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971486271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:11 Heat of formation + Delta-G solvation = -44.687865 kcal Electronic energy + Delta-G solvation = -24612.114248 eV Core-core repulsion = 21116.971608 eV Total energy + Delta-G solvation = -3495.142640 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.61975 -40.07804 -38.84432 -36.81307 -36.62590 -33.80771 -31.89188 -31.56399 -29.88380 -28.17248 -27.21606 -26.72609 -24.95705 -23.84250 -23.67862 -21.41699 -20.83588 -19.93137 -19.01617 -18.46978 -17.87676 -17.35103 -16.93547 -16.70137 -16.44951 -15.97163 -15.64064 -15.34409 -14.93912 -14.66104 -14.41411 -14.35813 -14.06346 -14.00235 -13.75461 -13.40499 -13.35100 -13.26498 -13.02440 -12.66678 -12.52869 -12.44584 -12.41826 -12.38207 -12.19428 -12.06391 -11.62904 -11.58559 -11.42841 -11.40455 -10.79142 -10.62339 -10.38856 -9.67164 -8.93295 -8.22336 -5.55241 1.31618 1.42472 1.54166 1.56659 1.96359 2.41878 2.61433 2.99119 3.28512 3.41616 3.53431 3.63957 3.75487 3.77501 3.98207 4.21359 4.24497 4.25261 4.30156 4.31382 4.38378 4.43958 4.48200 4.56284 4.66909 4.69481 4.73956 4.78006 4.83088 4.88522 4.94262 4.96858 4.99355 5.05972 5.10154 5.17351 5.21926 5.28570 5.33193 5.35652 5.86585 6.12987 6.33337 6.55437 6.89476 7.12868 7.58051 7.97802 8.97297 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028239 B = 0.003131 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.288926 B = 8940.482341 C = 9417.528697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.382 6.382 4 C 0.075 3.925 5 C -0.120 4.120 6 C -0.120 4.120 7 C 0.529 3.471 8 O -0.591 6.591 9 N -0.612 5.612 10 C 0.108 3.892 11 C -0.147 4.147 12 C 0.166 3.834 13 H 0.081 0.919 14 N -0.609 5.609 15 C 0.110 3.890 16 C -0.265 4.265 17 H 0.047 0.953 18 C -0.024 4.024 19 N -0.945 5.945 20 Si 0.950 3.050 21 H -0.279 1.279 22 H -0.310 1.310 23 H -0.250 1.250 24 C 0.099 3.901 25 C -0.133 4.133 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.015 0.985 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.264 0.736 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.534 -21.101 -11.557 29.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.302 6.302 4 C 0.017 3.983 5 C -0.158 4.158 6 C -0.141 4.141 7 C 0.320 3.680 8 O -0.472 6.472 9 N -0.345 5.345 10 C -0.014 4.014 11 C -0.187 4.187 12 C 0.058 3.942 13 H 0.099 0.901 14 N -0.332 5.332 15 C -0.034 4.034 16 C -0.394 4.394 17 H 0.064 0.936 18 C -0.221 4.221 19 N -0.589 5.589 20 Si 0.779 3.221 21 H -0.207 1.207 22 H -0.239 1.239 23 H -0.174 1.174 24 C -0.027 4.027 25 C -0.171 4.171 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.146 0.854 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.033 0.967 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.109 -20.830 -11.930 29.477 hybrid contribution 0.877 0.130 0.753 1.163 sum -16.232 -20.700 -11.176 28.581 Atomic orbital electron populations 1.21770 0.93069 1.03284 1.02698 1.22743 0.96141 0.82779 1.01050 1.87874 1.19669 1.28066 1.94575 1.22884 0.81698 0.98149 0.95574 1.23107 1.02187 0.94981 0.95533 1.22737 0.96912 0.94334 1.00121 1.20939 0.87721 0.80066 0.79312 1.90655 1.41479 1.67363 1.47704 1.48609 1.24910 1.42543 1.18403 1.22493 0.90643 1.03629 0.84667 1.23308 0.98890 0.99150 0.97343 1.21547 0.86905 0.98021 0.87736 0.90076 1.44073 1.24294 1.08757 1.56038 1.21344 0.93849 0.90010 0.98225 1.18692 1.36062 0.84941 0.99693 0.93561 1.25978 0.97770 0.99540 0.98803 1.70044 1.31709 1.34393 1.22778 0.85796 0.79399 0.79728 0.77132 1.20712 1.23945 1.17402 1.22298 0.91249 0.91903 0.97219 1.23361 1.02345 0.92356 0.99048 0.89364 0.92236 0.92394 0.92406 0.92321 0.88718 0.90053 0.88877 0.85357 0.87967 0.89280 0.91109 0.88842 0.96719 0.91370 0.95490 0.92740 0.93331 0.93114 0.89246 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 71.98 0.74 -0.65 16 2 C 0.05 0.54 6.50 71.98 0.47 1.00 16 3 O -0.38 -6.15 10.27 -148.98 -1.53 -7.68 16 4 C 0.08 1.14 4.37 31.12 0.14 1.28 16 5 C -0.12 -2.33 7.24 31.12 0.23 -2.10 16 6 C -0.12 -2.45 3.07 -11.01 -0.03 -2.48 16 7 C 0.53 15.58 7.37 87.65 0.65 16.22 16 8 O -0.59 -22.52 16.23 -3.03 -0.05 -22.57 16 9 N -0.61 -17.65 3.33 -811.82 -2.70 -20.35 16 10 C 0.11 2.32 6.66 86.86 0.58 2.90 16 11 C -0.15 -4.09 6.60 31.99 0.21 -3.88 16 12 C 0.17 6.08 3.44 46.18 0.16 6.24 16 13 H 0.08 3.07 7.95 -2.39 -0.02 3.05 16 14 N -0.61 -27.98 2.58 -696.15 -1.80 -29.78 16 15 C 0.11 4.63 8.32 127.77 1.06 5.70 16 16 C -0.26 -14.79 9.88 84.03 0.83 -13.96 16 17 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 18 C -0.02 -1.40 5.29 84.86 0.45 -0.95 16 19 N -0.95 -58.80 13.97 21.65 0.30 -58.50 16 20 Si 0.95 45.14 25.06 68.60 1.72 46.85 16 21 H -0.28 -12.81 6.64 99.48 0.66 -12.15 16 22 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 23 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 24 C 0.10 3.51 6.50 86.73 0.56 4.07 16 25 C -0.13 -2.14 7.04 31.12 0.22 -1.92 16 26 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 1.13 7.87 -2.39 -0.02 1.11 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 33 H 0.09 2.07 7.43 -2.39 -0.02 2.05 16 34 H 0.13 2.29 8.09 -2.39 -0.02 2.27 16 35 H 0.10 1.64 7.23 -2.38 -0.02 1.63 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 2.03 6.36 -2.39 -0.02 2.02 16 38 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.01 0.63 8.06 -2.38 -0.02 0.61 16 40 H 0.07 2.41 6.37 -2.39 -0.02 2.39 16 41 H 0.03 1.22 2.63 -2.38 -0.01 1.21 16 42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 2.00 6.90 -2.38 -0.02 1.99 16 45 H 0.09 1.55 8.09 -2.38 -0.02 1.53 16 46 H 0.10 1.29 8.05 -2.39 -0.02 1.27 16 Total: -1.00 -71.64 359.54 3.10 -68.53 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.90 Total: 12.03 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 6.26 Total: 11.47 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -4.19 Total: -108.62 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.58 Total: -30.26 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.72 Total: 46.85 kcal Total: -71.64 3.10 -68.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971486271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.844 kcal (2) G-P(sol) polarization free energy of solvation -71.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds