Wall clock time and date at job start Tue Mar 31 2020 03:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00101 * 2 1 4 4 H 1.09004 * 109.47729 * 29.99900 * 3 2 1 5 5 C 1.50694 * 109.47414 * 149.99914 * 3 2 1 6 6 O 1.21286 * 120.00154 * 26.91381 * 5 3 2 7 7 N 1.34782 * 120.00546 * 206.90858 * 5 3 2 8 8 C 1.47025 * 125.64550 * 354.95496 * 7 5 3 9 9 C 1.54316 * 107.26977 * 178.90390 * 8 7 5 10 10 C 1.55160 * 102.94397 * 337.80185 * 9 8 7 11 11 H 1.09000 * 111.00482 * 277.43286 * 10 9 8 12 12 N 1.46502 * 111.00415 * 153.57885 * 10 9 8 13 13 C 1.46499 * 119.99981 * 301.45266 * 12 10 9 14 14 C 1.36936 * 119.99941 * 121.45585 * 12 10 9 15 15 H 1.07997 * 119.99938 * 17.52628 * 14 12 10 16 16 C 1.38812 * 119.99760 * 197.52000 * 14 12 10 17 17 N 1.31614 * 120.00224 * 7.28486 * 16 14 12 18 18 Si 1.86796 * 119.99826 * 187.28332 * 16 14 12 19 19 H 1.48504 * 109.47365 * 60.00013 * 18 16 14 20 20 H 1.48497 * 109.47246 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47609 * 300.00331 * 18 16 14 22 22 C 1.47424 * 125.65097 * 174.90736 * 7 5 3 23 23 C 1.53003 * 109.47175 * 269.99842 * 3 2 1 24 24 C 1.53782 * 113.61348 * 155.91099 * 23 3 2 25 25 C 1.53954 * 87.02218 * 220.04940 * 24 23 3 26 26 C 1.53785 * 113.61076 * 58.30694 * 23 3 2 27 27 H 1.09003 * 109.47242 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46883 * 300.00284 * 1 2 3 29 29 H 1.09000 * 109.47278 * 59.99907 * 1 2 3 30 30 H 1.09000 * 109.87979 * 59.48246 * 8 7 5 31 31 H 1.08999 * 110.00532 * 298.39177 * 8 7 5 32 32 H 1.08998 * 110.72403 * 96.16684 * 9 8 7 33 33 H 1.09000 * 110.71846 * 219.44569 * 9 8 7 34 34 H 1.09004 * 109.46888 * 95.35559 * 13 12 10 35 35 H 1.09001 * 109.47382 * 215.35718 * 13 12 10 36 36 H 1.09003 * 109.47544 * 335.35998 * 13 12 10 37 37 H 0.96998 * 120.00007 * 180.02562 * 17 16 14 38 38 H 1.09003 * 110.36579 * 323.00571 * 22 7 5 39 39 H 1.09001 * 110.36724 * 85.21781 * 22 7 5 40 40 H 1.08993 * 112.85149 * 287.11003 * 23 3 2 41 41 H 1.08997 * 113.61824 * 334.57127 * 24 23 3 42 42 H 1.09008 * 113.61415 * 105.47589 * 24 23 3 43 43 H 1.08998 * 113.54030 * 270.81611 * 25 24 23 44 44 H 1.09004 * 113.66630 * 139.93008 * 25 24 23 45 45 H 1.09001 * 113.61568 * 254.52756 * 26 23 3 46 46 H 1.08997 * 113.61510 * 25.43638 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3386 1.2639 0.7104 6 8 3.9782 0.2338 0.7407 7 7 3.8161 2.3714 1.3121 8 6 3.2001 3.7055 1.2645 9 6 4.0781 4.6462 2.1163 10 6 4.8263 3.6655 3.0576 11 1 4.2083 3.3990 3.9150 12 7 6.1076 4.2283 3.4911 13 6 7.1155 4.6058 2.4972 14 6 6.3630 4.4014 4.8252 15 1 5.7687 3.8800 5.5609 16 6 7.3860 5.2470 5.2319 17 7 8.0156 5.9911 4.3475 18 14 7.8690 5.3288 7.0345 19 1 8.3109 3.9862 7.4900 20 1 8.9790 6.3003 7.2059 21 1 6.7009 5.7653 7.8408 22 6 5.0419 2.4455 2.1277 23 6 2.2177 1.7713 -1.4425 24 6 2.2692 3.3007 -1.5945 25 6 1.4436 3.1202 -2.8814 26 6 0.9221 1.8089 -2.2700 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.1924 3.6635 1.6778 31 1 3.1639 4.0630 0.2354 32 1 4.7828 5.1905 1.4876 33 1 3.4597 5.3358 2.6908 34 1 7.0263 5.6692 2.2750 35 1 8.1103 4.3993 2.8920 36 1 6.9599 4.0298 1.5849 37 1 8.7306 6.5817 4.6317 38 1 5.1612 1.5360 2.7167 39 1 5.9126 2.6010 1.4907 40 1 3.0387 1.2552 -1.9401 41 1 1.7387 3.8359 -0.8069 42 1 3.2728 3.6886 -1.7694 43 1 2.0534 2.9741 -3.7729 44 1 0.6708 3.8772 -3.0153 45 1 0.8396 0.9942 -2.9895 46 1 0.0227 1.9356 -1.6675 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972026515.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:51 Heat of formation + Delta-G solvation = -35.748084 kcal Electronic energy + Delta-G solvation = -25318.711700 eV Core-core repulsion = 21823.956718 eV Total energy + Delta-G solvation = -3494.754982 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67940 -39.96061 -38.82781 -37.79872 -36.58154 -33.53405 -31.59943 -30.73753 -29.16338 -28.11047 -27.38218 -26.47960 -25.65622 -24.23253 -23.44420 -20.98325 -20.70220 -20.24780 -18.98945 -18.48288 -17.65584 -17.50144 -17.11145 -16.64959 -16.21626 -16.01353 -15.51818 -15.09511 -14.88549 -14.77382 -14.44878 -14.35390 -14.15826 -13.71498 -13.55046 -13.35259 -13.06962 -12.91876 -12.87279 -12.73931 -12.55140 -12.36979 -12.33931 -12.12891 -12.11446 -11.86452 -11.82371 -11.48998 -11.41712 -11.17355 -10.90436 -10.62975 -10.28642 -9.68599 -8.85504 -7.81598 -5.28083 1.42929 1.48307 1.50568 1.56558 1.71030 2.50726 2.89104 3.27466 3.36260 3.54188 3.65161 3.71615 3.85709 3.87028 3.93180 3.95828 4.12128 4.17566 4.29744 4.34595 4.42552 4.52816 4.54733 4.65199 4.74894 4.78409 4.81539 4.87955 4.90343 4.95455 4.99943 5.09864 5.12664 5.16038 5.22680 5.27489 5.34670 5.45047 5.54246 5.60859 5.77518 6.07921 6.30133 6.49875 7.06072 7.14569 7.84618 8.26243 9.20641 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027852 B = 0.003493 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.069517 B = 8014.382097 C = 8483.907016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.394 6.394 3 C 0.098 3.902 4 H 0.110 0.890 5 C 0.521 3.479 6 O -0.584 6.584 7 N -0.606 5.606 8 C 0.094 3.906 9 C -0.141 4.141 10 C 0.168 3.832 11 H 0.077 0.923 12 N -0.605 5.605 13 C 0.182 3.818 14 C -0.266 4.266 15 H 0.075 0.925 16 C -0.051 4.051 17 N -0.940 5.940 18 Si 0.971 3.029 19 H -0.283 1.283 20 H -0.295 1.295 21 H -0.273 1.273 22 C 0.096 3.904 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.132 4.132 26 C -0.125 4.125 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.007 0.993 35 H 0.025 0.975 36 H 0.020 0.980 37 H 0.248 0.752 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.567 -3.322 -13.412 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.312 6.312 3 C 0.037 3.963 4 H 0.127 0.873 5 C 0.310 3.690 6 O -0.463 6.463 7 N -0.341 5.341 8 C -0.028 4.028 9 C -0.181 4.181 10 C 0.059 3.941 11 H 0.095 0.905 12 N -0.327 5.327 13 C 0.038 3.962 14 C -0.395 4.395 15 H 0.093 0.907 16 C -0.246 4.246 17 N -0.587 5.587 18 Si 0.800 3.200 19 H -0.209 1.209 20 H -0.221 1.221 21 H -0.199 1.199 22 C -0.030 4.030 23 C -0.153 4.153 24 C -0.178 4.178 25 C -0.169 4.169 26 C -0.162 4.162 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.026 0.974 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.011 -3.978 -13.392 23.592 hybrid contribution 1.044 0.085 1.124 1.537 sum -17.967 -3.893 -12.268 22.101 Atomic orbital electron populations 1.23353 0.78565 1.04412 1.02021 1.87987 1.22101 1.25996 1.95127 1.21976 0.91134 0.86892 0.96293 0.87263 1.20882 0.88263 0.81676 0.78197 1.90668 1.61406 1.32657 1.61583 1.48439 1.25953 1.09851 1.49830 1.22619 0.97511 0.80290 1.02352 1.23076 0.98828 0.97997 0.98168 1.21509 0.86937 0.90918 0.94764 0.90528 1.44007 1.12847 1.72790 1.03028 1.20558 0.91437 0.95596 0.88613 1.19597 1.15454 1.20778 0.83702 0.90723 1.25683 1.00064 0.97324 1.01518 1.70263 1.26344 1.28476 1.33596 0.85278 0.77491 0.77035 0.80226 1.20892 1.22072 1.19906 1.22644 0.87059 0.99806 0.93442 1.23011 1.01016 0.98160 0.93124 1.23271 1.01438 0.93347 0.99769 1.22812 0.99782 0.97677 0.96641 1.23025 0.95919 0.98666 0.98634 0.88578 0.92750 0.90828 0.88647 0.88194 0.91647 0.89201 0.97447 0.95670 0.96172 0.94285 0.93177 0.92601 0.90828 0.87424 0.91592 0.90289 0.89233 0.91031 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 10.56 113.37 1.20 1.37 16 2 O -0.39 -10.17 9.96 -131.49 -1.31 -11.48 16 3 C 0.10 2.27 2.02 29.85 0.06 2.33 16 4 H 0.11 1.82 6.61 -2.38 -0.02 1.81 16 5 C 0.52 17.31 7.05 87.65 0.62 17.92 16 6 O -0.58 -25.55 17.00 14.44 0.25 -25.30 16 7 N -0.61 -18.80 3.33 -811.79 -2.70 -21.50 16 8 C 0.09 2.13 5.57 86.73 0.48 2.62 16 9 C -0.14 -4.23 6.54 31.78 0.21 -4.02 16 10 C 0.17 6.50 3.54 46.38 0.16 6.67 16 11 H 0.08 2.97 7.91 -2.39 -0.02 2.95 16 12 N -0.61 -29.63 2.97 -695.01 -2.06 -31.69 16 13 C 0.18 9.01 7.79 127.77 1.00 10.00 16 14 C -0.27 -14.32 9.72 84.03 0.82 -13.50 16 15 H 0.07 3.88 7.77 -2.91 -0.02 3.86 16 16 C -0.05 -2.83 5.24 84.86 0.44 -2.39 16 17 N -0.94 -54.50 10.11 21.65 0.22 -54.28 16 18 Si 0.97 44.65 29.56 68.60 2.03 46.68 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 C 0.10 3.63 6.42 86.85 0.56 4.19 16 23 C -0.13 -2.56 3.34 -10.26 -0.03 -2.59 16 24 C -0.14 -2.01 5.51 31.18 0.17 -1.84 16 25 C -0.13 -1.47 8.09 31.18 0.25 -1.22 16 26 C -0.13 -1.56 6.23 31.12 0.19 -1.37 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 28 H 0.05 0.66 8.09 -2.38 -0.02 0.64 16 29 H 0.07 0.74 4.85 -2.39 -0.01 0.73 16 30 H 0.10 1.60 7.67 -2.39 -0.02 1.58 16 31 H 0.10 1.83 4.49 -2.39 -0.01 1.82 16 32 H 0.06 2.15 7.28 -2.39 -0.02 2.13 16 33 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.01 0.38 7.53 -2.39 -0.02 0.36 16 35 H 0.02 1.37 6.79 -2.39 -0.02 1.36 16 36 H 0.02 0.88 6.05 -2.39 -0.01 0.86 16 37 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 38 H 0.05 2.09 8.09 -2.39 -0.02 2.07 16 39 H 0.06 2.27 6.04 -2.39 -0.01 2.26 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.11 1.14 6.50 -2.39 -0.02 1.13 16 42 H 0.07 1.09 7.83 -2.38 -0.02 1.07 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.10 0.90 6.16 -2.39 -0.01 0.88 16 Total: -1.00 -72.50 348.68 3.52 -68.98 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.97 Total: 10.43 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 6.13 Total: 18.17 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -4.54 Total: -107.48 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.06 Total: -36.78 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.50 3.52 -68.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972026515.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.236 kcal (2) G-P(sol) polarization free energy of solvation -72.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds