Wall clock time and date at job start Tue Mar 31 2020 03:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36938 * 119.99813 * 2 1 4 4 H 1.08001 * 119.99889 * 201.70604 * 3 2 1 5 5 C 1.38812 * 119.99932 * 21.70320 * 3 2 1 6 6 N 1.31623 * 120.00093 * 13.70356 * 5 3 2 7 7 Si 1.86796 * 119.99943 * 193.69649 * 5 3 2 8 8 H 1.48502 * 109.47480 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.47151 * 120.00158 * 7 5 3 10 10 H 1.48503 * 109.47332 * 240.00116 * 7 5 3 11 11 C 1.46493 * 120.00019 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.78176 * 176.76329 * 11 2 1 13 13 C 1.55157 * 110.72360 * 53.52501 * 11 2 1 14 14 C 1.54908 * 101.58404 * 206.13417 * 13 11 2 15 15 N 1.47425 * 104.83116 * 37.00811 * 14 13 11 16 16 C 1.34780 * 125.64895 * 155.89676 * 15 14 13 17 17 O 1.21283 * 119.99792 * 179.97438 * 16 15 14 18 18 C 1.50698 * 119.99953 * 359.96964 * 16 15 14 19 19 C 1.52999 * 109.47253 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.52169 * 54.87176 * 19 18 16 21 21 C 1.53173 * 109.52325 * 174.99818 * 19 18 16 22 22 C 1.53178 * 109.03497 * 176.88294 * 21 19 18 23 23 C 1.53092 * 109.16668 * 303.02282 * 22 21 19 24 24 O 1.42909 * 109.41384 * 57.61016 * 23 22 21 25 25 C 1.42904 * 114.09191 * 298.83938 * 24 23 22 26 26 C 1.47024 * 108.70314 * 335.87194 * 15 14 13 27 27 H 1.09002 * 109.46985 * 274.47331 * 1 2 3 28 28 H 1.08993 * 109.46851 * 34.47188 * 1 2 3 29 29 H 1.09003 * 109.46795 * 154.46852 * 1 2 3 30 30 H 0.96996 * 120.00076 * 179.97438 * 6 5 3 31 31 H 1.09006 * 111.00149 * 324.20840 * 13 11 2 32 32 H 1.09001 * 111.00478 * 88.05636 * 13 11 2 33 33 H 1.09002 * 110.36601 * 155.84173 * 14 13 11 34 34 H 1.08994 * 110.36658 * 278.06263 * 14 13 11 35 35 H 1.09001 * 109.46861 * 300.00013 * 18 16 15 36 36 H 1.09004 * 109.47158 * 60.00192 * 18 16 15 37 37 H 1.08990 * 109.54711 * 296.75296 * 21 19 18 38 38 H 1.09003 * 109.53887 * 56.93408 * 21 19 18 39 39 H 1.09008 * 109.52133 * 62.93042 * 22 21 19 40 40 H 1.08997 * 109.52089 * 183.05019 * 22 21 19 41 41 H 1.09002 * 109.47961 * 177.58975 * 23 22 21 42 42 H 1.08988 * 109.48150 * 297.61412 * 23 22 21 43 43 H 1.08996 * 109.48392 * 301.17691 * 25 24 23 44 44 H 1.09006 * 109.47303 * 181.14089 * 25 24 23 45 45 H 1.09001 * 109.88395 * 241.64263 * 26 15 14 46 46 H 1.08998 * 109.88346 * 120.48080 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1723 1.2191 -0.3459 5 6 1.5294 2.3455 0.4446 6 7 0.3968 2.2719 1.1110 7 14 2.3022 4.0102 0.0972 8 1 3.5636 3.8214 -0.6635 9 1 1.3615 4.8355 -0.7023 10 1 2.5958 4.6972 1.3806 11 6 2.1976 -1.2687 0.0006 12 1 3.2721 -1.0949 -0.0570 13 6 1.7250 -2.1760 -1.1659 14 6 2.0500 -3.5865 -0.6142 15 7 1.7502 -3.5064 0.8270 16 6 1.4405 -4.5482 1.6240 17 8 1.2118 -4.3644 2.8008 18 6 1.3782 -5.9414 1.0529 19 6 1.0082 -6.9304 2.1601 20 1 0.0809 -6.6129 2.6371 21 6 0.8223 -8.3266 1.5582 22 6 0.5292 -9.3215 2.6853 23 6 1.6698 -9.2757 3.7055 24 8 1.8088 -7.9433 4.2030 25 6 2.1303 -6.9769 3.2005 26 6 1.8455 -2.1018 1.2509 27 1 -0.3633 0.0802 1.0246 28 1 -0.3633 0.8472 -0.5816 29 1 -0.3633 -0.9274 -0.4429 30 1 -0.0365 3.0821 1.4219 31 1 0.6551 -2.0619 -1.3409 32 1 2.2917 -1.9715 -2.0743 33 1 1.4185 -4.3356 -1.0920 34 1 3.1025 -3.8222 -0.7719 35 1 0.6244 -5.9783 0.2664 36 1 2.3502 -6.2075 0.6375 37 1 -0.0122 -8.3134 0.8573 38 1 1.7323 -8.6226 1.0362 39 1 -0.4075 -9.0529 3.1739 40 1 0.4491 -10.3269 2.2720 41 1 1.4459 -9.9507 4.5316 42 1 2.5989 -9.5837 3.2260 43 1 3.0654 -7.2546 2.7144 44 1 2.2381 -5.9957 3.6630 45 1 2.6288 -1.9934 2.0012 46 1 0.8902 -1.7722 1.6592 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980417632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:12 Heat of formation + Delta-G solvation = -64.032009 kcal Electronic energy + Delta-G solvation = -24702.653073 eV Core-core repulsion = 21206.671608 eV Total energy + Delta-G solvation = -3495.981465 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.20712 -39.12309 -37.44121 -34.80841 -34.49827 -32.25768 -31.64028 -29.79062 -28.58819 -27.05180 -26.05118 -25.14808 -23.77545 -22.49418 -22.29137 -20.28420 -19.26222 -18.88585 -17.08820 -16.86295 -16.48569 -16.16523 -15.82347 -15.27318 -15.10008 -14.71405 -14.45724 -14.11358 -13.55198 -13.35922 -13.22057 -12.88799 -12.80101 -12.61965 -12.29329 -12.15208 -11.98155 -11.77910 -11.52679 -11.40893 -11.13526 -10.97403 -10.94124 -10.81484 -10.58286 -10.48234 -10.42600 -10.27449 -9.89714 -9.83490 -9.58546 -9.47168 -8.59720 -8.29390 -6.85009 -5.78003 -3.24675 2.83843 3.21850 3.35561 3.42723 3.44696 3.80937 4.42320 4.46813 4.52278 4.60127 4.72283 4.83598 4.95887 4.97951 5.16819 5.21281 5.25409 5.32126 5.35495 5.40821 5.43476 5.49704 5.57948 5.60236 5.66893 5.76655 5.80001 5.83315 5.87734 5.98103 6.13648 6.18784 6.31569 6.35298 6.52715 6.66410 6.81390 6.85213 7.12322 7.32424 7.69189 7.76601 7.82950 8.31982 8.41343 9.16514 9.79212 10.27568 11.26649 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.036859 B = 0.002862 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.465502 B = 9779.964752 C =10052.875304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.101 3.899 15 N -0.613 5.613 16 C 0.519 3.481 17 O -0.542 6.542 18 C -0.130 4.130 19 C -0.107 4.107 20 H 0.088 0.912 21 C -0.118 4.118 22 C -0.155 4.155 23 C 0.057 3.943 24 O -0.380 6.380 25 C 0.062 3.938 26 C 0.086 3.914 27 H 0.030 0.970 28 H 0.045 0.955 29 H 0.002 0.998 30 H 0.253 0.747 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.114 0.886 45 H 0.059 0.941 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.286 -21.975 -3.503 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.548 5.548 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.022 4.022 15 N -0.347 5.347 16 C 0.308 3.692 17 O -0.420 6.420 18 C -0.170 4.170 19 C -0.126 4.126 20 H 0.107 0.893 21 C -0.155 4.155 22 C -0.193 4.193 23 C -0.020 4.020 24 O -0.298 6.298 25 C -0.014 4.014 26 C -0.039 4.039 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.020 0.980 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.132 0.868 45 H 0.077 0.923 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.004 -21.693 -2.569 21.937 hybrid contribution 0.298 0.875 -0.522 1.061 sum 2.302 -20.819 -3.091 21.172 Atomic orbital electron populations 1.20810 0.82398 0.95708 0.99517 1.43943 1.01925 0.99928 1.84836 1.19268 0.97852 0.84950 1.36980 0.91084 1.25046 0.97808 0.98638 0.98045 1.70095 1.18835 1.27097 1.38752 0.86156 0.78522 0.84095 0.77561 1.20269 1.21580 1.21678 1.21347 0.96349 0.85975 0.90113 0.90406 1.23351 1.02834 0.93279 0.99957 1.22313 1.00022 0.99091 0.80799 1.48622 1.68077 1.08080 1.09948 1.20294 0.76961 0.85886 0.86107 1.90685 1.49924 1.85310 1.16084 1.21652 1.03891 0.91987 0.99484 1.21556 1.01489 0.93863 0.95702 0.89325 1.21657 1.02031 0.94224 0.97638 1.22179 1.00153 0.99689 0.97286 1.22568 0.96968 0.84990 0.97502 1.87994 1.91206 1.16573 1.34036 1.22878 0.94815 0.93748 0.90006 1.22936 1.02287 0.78715 0.99946 0.95153 0.93605 0.97972 0.93643 0.90381 0.90407 0.91407 0.91644 0.88780 0.89111 0.91336 0.91782 0.90945 0.90999 0.89192 0.93487 0.93950 0.86828 0.92270 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 7.82 59.85 0.47 4.33 16 2 N -0.59 -14.14 2.93 -171.39 -0.50 -14.65 16 3 C -0.26 -6.96 9.63 -15.06 -0.14 -7.10 16 4 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 5 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16 6 N -0.90 -26.13 10.68 55.49 0.59 -25.53 16 7 Si 0.91 21.50 29.57 -169.99 -5.03 16.48 16 8 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 C 0.17 3.34 3.44 -66.10 -0.23 3.11 16 12 H 0.08 1.48 7.93 -51.93 -0.41 1.07 16 13 C -0.15 -2.33 6.59 -24.58 -0.16 -2.49 16 14 C 0.10 1.25 6.69 -2.53 -0.02 1.23 16 15 N -0.61 -9.65 3.33 -170.52 -0.57 -10.21 16 16 C 0.52 8.05 7.58 -10.98 -0.08 7.97 16 17 O -0.54 -10.52 14.32 5.56 0.08 -10.44 16 18 C -0.13 -1.38 4.18 -27.88 -0.12 -1.50 16 19 C -0.11 -1.18 2.03 -90.48 -0.18 -1.37 16 20 H 0.09 1.18 7.95 -51.93 -0.41 0.76 16 21 C -0.12 -0.97 5.31 -26.55 -0.14 -1.11 16 22 C -0.16 -1.24 6.14 -26.59 -0.16 -1.41 16 23 C 0.06 0.52 6.84 37.20 0.25 0.77 16 24 O -0.38 -4.96 10.77 -35.23 -0.38 -5.34 16 25 C 0.06 0.77 5.84 37.21 0.22 0.99 16 26 C 0.09 1.66 6.51 -3.06 -0.02 1.64 16 27 H 0.03 0.81 7.32 -51.93 -0.38 0.43 16 28 H 0.05 1.19 7.23 -51.93 -0.38 0.81 16 29 H 0.00 0.04 6.02 -51.93 -0.31 -0.27 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.08 1.27 6.05 -51.93 -0.31 0.95 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.85 7.85 -51.93 -0.41 0.44 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.38 8.14 -51.94 -0.42 -0.05 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.11 1.73 6.04 -51.93 -0.31 1.42 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.07 1.63 7.11 -51.93 -0.37 1.26 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -31.59 353.28 -8.77 -40.36 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.88 Total: -1.05 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.41 Total: 5.06 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.48 Total: -50.39 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.30 Total: -15.78 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.59 -8.77 -40.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980417632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.669 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds