Wall clock time and date at job start Tue Mar 31 2020 03:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36938 * 119.99813 * 2 1 4 4 H 1.08001 * 119.99889 * 201.70604 * 3 2 1 5 5 C 1.38812 * 119.99932 * 21.70320 * 3 2 1 6 6 N 1.31623 * 120.00093 * 13.70356 * 5 3 2 7 7 Si 1.86796 * 119.99943 * 193.69649 * 5 3 2 8 8 H 1.48502 * 109.47480 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.47151 * 120.00158 * 7 5 3 10 10 H 1.48503 * 109.47332 * 240.00116 * 7 5 3 11 11 C 1.46493 * 120.00019 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.78176 * 176.76329 * 11 2 1 13 13 C 1.55157 * 110.72360 * 53.52501 * 11 2 1 14 14 C 1.54908 * 101.58404 * 206.13417 * 13 11 2 15 15 N 1.47425 * 104.83116 * 37.00811 * 14 13 11 16 16 C 1.34780 * 125.64895 * 155.89676 * 15 14 13 17 17 O 1.21283 * 119.99792 * 179.97438 * 16 15 14 18 18 C 1.50698 * 119.99953 * 359.96964 * 16 15 14 19 19 C 1.52999 * 109.47253 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.52169 * 54.87176 * 19 18 16 21 21 C 1.53173 * 109.52325 * 174.99818 * 19 18 16 22 22 C 1.53178 * 109.03497 * 176.88294 * 21 19 18 23 23 C 1.53092 * 109.16668 * 303.02282 * 22 21 19 24 24 O 1.42909 * 109.41384 * 57.61016 * 23 22 21 25 25 C 1.42904 * 114.09191 * 298.83938 * 24 23 22 26 26 C 1.47024 * 108.70314 * 335.87194 * 15 14 13 27 27 H 1.09002 * 109.46985 * 274.47331 * 1 2 3 28 28 H 1.08993 * 109.46851 * 34.47188 * 1 2 3 29 29 H 1.09003 * 109.46795 * 154.46852 * 1 2 3 30 30 H 0.96996 * 120.00076 * 179.97438 * 6 5 3 31 31 H 1.09006 * 111.00149 * 324.20840 * 13 11 2 32 32 H 1.09001 * 111.00478 * 88.05636 * 13 11 2 33 33 H 1.09002 * 110.36601 * 155.84173 * 14 13 11 34 34 H 1.08994 * 110.36658 * 278.06263 * 14 13 11 35 35 H 1.09001 * 109.46861 * 300.00013 * 18 16 15 36 36 H 1.09004 * 109.47158 * 60.00192 * 18 16 15 37 37 H 1.08990 * 109.54711 * 296.75296 * 21 19 18 38 38 H 1.09003 * 109.53887 * 56.93408 * 21 19 18 39 39 H 1.09008 * 109.52133 * 62.93042 * 22 21 19 40 40 H 1.08997 * 109.52089 * 183.05019 * 22 21 19 41 41 H 1.09002 * 109.47961 * 177.58975 * 23 22 21 42 42 H 1.08988 * 109.48150 * 297.61412 * 23 22 21 43 43 H 1.08996 * 109.48392 * 301.17691 * 25 24 23 44 44 H 1.09006 * 109.47303 * 181.14089 * 25 24 23 45 45 H 1.09001 * 109.88395 * 241.64263 * 26 15 14 46 46 H 1.08998 * 109.88346 * 120.48080 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1723 1.2191 -0.3459 5 6 1.5294 2.3455 0.4446 6 7 0.3968 2.2719 1.1110 7 14 2.3022 4.0102 0.0972 8 1 3.5636 3.8214 -0.6635 9 1 1.3615 4.8355 -0.7023 10 1 2.5958 4.6972 1.3806 11 6 2.1976 -1.2687 0.0006 12 1 3.2721 -1.0949 -0.0570 13 6 1.7250 -2.1760 -1.1659 14 6 2.0500 -3.5865 -0.6142 15 7 1.7502 -3.5064 0.8270 16 6 1.4405 -4.5482 1.6240 17 8 1.2118 -4.3644 2.8008 18 6 1.3782 -5.9414 1.0529 19 6 1.0082 -6.9304 2.1601 20 1 0.0809 -6.6129 2.6371 21 6 0.8223 -8.3266 1.5582 22 6 0.5292 -9.3215 2.6853 23 6 1.6698 -9.2757 3.7055 24 8 1.8088 -7.9433 4.2030 25 6 2.1303 -6.9769 3.2005 26 6 1.8455 -2.1018 1.2509 27 1 -0.3633 0.0802 1.0246 28 1 -0.3633 0.8472 -0.5816 29 1 -0.3633 -0.9274 -0.4429 30 1 -0.0365 3.0821 1.4219 31 1 0.6551 -2.0619 -1.3409 32 1 2.2917 -1.9715 -2.0743 33 1 1.4185 -4.3356 -1.0920 34 1 3.1025 -3.8222 -0.7719 35 1 0.6244 -5.9783 0.2664 36 1 2.3502 -6.2075 0.6375 37 1 -0.0122 -8.3134 0.8573 38 1 1.7323 -8.6226 1.0362 39 1 -0.4075 -9.0529 3.1739 40 1 0.4491 -10.3269 2.2720 41 1 1.4459 -9.9507 4.5316 42 1 2.5989 -9.5837 3.2260 43 1 3.0654 -7.2546 2.7144 44 1 2.2381 -5.9957 3.6630 45 1 2.6288 -1.9934 2.0012 46 1 0.8902 -1.7722 1.6592 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980417632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:11 Heat of formation + Delta-G solvation = -84.710759 kcal Electronic energy + Delta-G solvation = -24703.549770 eV Core-core repulsion = 21206.671608 eV Total energy + Delta-G solvation = -3496.878163 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.33482 -40.14153 -38.84124 -36.54361 -35.38184 -33.52056 -32.93557 -31.29089 -29.85771 -28.25349 -28.01340 -25.93605 -25.22979 -23.94593 -23.24548 -21.09185 -20.82545 -20.05611 -18.96801 -18.04942 -17.56988 -17.18548 -17.02278 -16.63823 -16.35677 -15.89553 -15.50406 -15.22197 -15.03598 -14.90863 -14.47623 -14.25521 -14.04908 -13.58056 -13.50610 -13.36240 -13.27649 -13.09469 -12.80029 -12.69181 -12.51780 -12.40793 -12.19211 -12.10408 -12.07121 -11.91986 -11.79801 -11.71887 -11.40272 -11.23353 -10.73816 -10.65831 -10.36518 -9.61155 -8.84685 -7.85248 -5.34271 1.46551 1.47541 1.58352 1.65437 2.01357 2.50530 2.99748 3.27395 3.49293 3.59792 3.78133 3.83386 3.87295 3.94804 4.06173 4.12606 4.28498 4.29267 4.35863 4.39590 4.48679 4.56914 4.61942 4.64036 4.74416 4.77649 4.79753 4.89206 4.91387 4.98882 5.05258 5.11131 5.13011 5.19489 5.26243 5.30009 5.32931 5.43731 5.45493 5.63047 5.68379 6.29270 6.31545 6.63183 7.10750 7.20429 7.82522 8.26722 9.18290 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.036859 B = 0.002862 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.465502 B = 9779.964752 C =10052.875304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.264 4.264 4 H 0.080 0.920 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.972 3.028 8 H -0.260 1.260 9 H -0.291 1.291 10 H -0.297 1.297 11 C 0.164 3.836 12 H 0.082 0.918 13 C -0.142 4.142 14 C 0.106 3.894 15 N -0.615 5.615 16 C 0.510 3.490 17 O -0.593 6.593 18 C -0.116 4.116 19 C -0.104 4.104 20 H 0.054 0.946 21 C -0.111 4.111 22 C -0.154 4.154 23 C 0.048 3.952 24 O -0.413 6.413 25 C 0.062 3.938 26 C 0.097 3.903 27 H -0.008 1.008 28 H 0.020 0.980 29 H 0.034 0.966 30 H 0.247 0.753 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.038 0.962 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.779 -24.981 -6.643 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.324 5.324 3 C -0.394 4.394 4 H 0.098 0.902 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.801 3.199 8 H -0.184 1.184 9 H -0.218 1.218 10 H -0.224 1.224 11 C 0.055 3.945 12 H 0.100 0.900 13 C -0.181 4.181 14 C -0.016 4.016 15 N -0.349 5.349 16 C 0.301 3.699 17 O -0.474 6.474 18 C -0.155 4.155 19 C -0.124 4.124 20 H 0.073 0.927 21 C -0.149 4.149 22 C -0.192 4.192 23 C -0.028 4.028 24 O -0.332 6.332 25 C -0.015 4.015 26 C -0.029 4.029 27 H 0.010 0.990 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.057 0.943 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.531 -24.757 -5.756 25.662 hybrid contribution -0.135 1.713 0.536 1.800 sum 3.396 -23.044 -5.220 23.871 Atomic orbital electron populations 1.20452 0.82965 0.96081 0.96956 1.44150 1.01945 1.01192 1.85080 1.19682 0.98163 0.86031 1.35482 0.90205 1.25868 0.98592 1.02183 0.98561 1.70283 1.20543 1.27384 1.40597 0.85123 0.78174 0.79706 0.76934 1.18443 1.21822 1.22443 1.21585 0.96254 0.84735 0.91877 0.89958 1.23230 1.02283 0.93733 0.98865 1.22582 1.02818 0.98124 0.78068 1.48715 1.68125 1.06266 1.11751 1.21361 0.75442 0.87576 0.85499 1.90679 1.51864 1.86231 1.18651 1.21706 1.06675 0.87624 0.99508 1.21499 0.99255 0.96093 0.95534 0.92696 1.21655 1.03765 0.91737 0.97714 1.22187 0.98826 1.01206 0.96984 1.22839 0.98344 0.83132 0.98524 1.87941 1.91527 1.18432 1.35314 1.22762 0.96457 0.92144 0.90093 1.22452 0.99184 0.81758 0.99486 0.99018 0.96105 0.94814 0.94362 0.91512 0.88040 0.87330 0.88584 0.85852 0.85638 0.89762 0.89518 0.92483 0.88266 0.88264 0.91809 0.91900 0.90807 0.94332 0.95243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.02 7.82 127.77 1.00 10.02 16 2 N -0.60 -29.54 2.93 -696.15 -2.04 -31.58 16 3 C -0.26 -14.18 9.63 84.03 0.81 -13.37 16 4 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 5 C -0.06 -3.21 5.08 84.86 0.43 -2.78 16 6 N -0.94 -56.85 10.68 21.65 0.23 -56.62 16 7 Si 0.97 44.98 29.57 68.60 2.03 47.01 16 8 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 10 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 11 C 0.16 6.24 3.44 46.18 0.16 6.40 16 12 H 0.08 3.04 7.93 -2.39 -0.02 3.02 16 13 C -0.14 -3.83 6.59 31.99 0.21 -3.62 16 14 C 0.11 2.11 6.69 86.85 0.58 2.69 16 15 N -0.62 -18.40 3.33 -811.80 -2.70 -21.10 16 16 C 0.51 15.36 7.58 87.66 0.66 16.03 16 17 O -0.59 -24.14 14.32 -3.04 -0.04 -24.18 16 18 C -0.12 -2.04 4.18 29.85 0.12 -1.91 16 19 C -0.10 -2.13 2.03 -10.70 -0.02 -2.15 16 20 H 0.05 1.48 7.95 -2.39 -0.02 1.46 16 21 C -0.11 -1.40 5.31 30.71 0.16 -1.23 16 22 C -0.15 -2.05 6.14 30.68 0.19 -1.86 16 23 C 0.05 0.78 6.84 72.01 0.49 1.27 16 24 O -0.41 -10.77 10.77 -148.98 -1.60 -12.38 16 25 C 0.06 1.52 5.84 72.01 0.42 1.94 16 26 C 0.10 3.87 6.51 86.73 0.56 4.43 16 27 H -0.01 -0.49 7.32 -2.39 -0.02 -0.51 16 28 H 0.02 1.10 7.23 -2.39 -0.02 1.09 16 29 H 0.03 1.43 6.02 -2.39 -0.01 1.42 16 30 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.07 1.98 6.05 -2.38 -0.01 1.96 16 32 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.11 1.40 7.48 -2.39 -0.02 1.39 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 35 H 0.12 1.53 7.85 -2.39 -0.02 1.52 16 36 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 2.39 6.04 -2.38 -0.01 2.38 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.03 1.41 7.11 -2.39 -0.02 1.39 16 Total: -1.00 -75.82 353.28 2.60 -73.21 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.94 Total: 9.80 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 5.79 Total: 15.85 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -4.51 Total: -109.31 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.65 Total: -36.56 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.82 2.60 -73.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980417632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.498 kcal (2) G-P(sol) polarization free energy of solvation -75.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds