Wall clock time and date at job start Tue Mar 31 2020 03:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 119.99626 * 2 1 4 4 H 1.08009 * 119.99726 * 203.25533 * 3 2 1 5 5 C 1.38813 * 120.00273 * 23.25898 * 3 2 1 6 6 N 1.31618 * 119.99932 * 13.82093 * 5 3 2 7 7 Si 1.86804 * 119.99918 * 193.81912 * 5 3 2 8 8 H 1.48506 * 109.46931 * 89.99922 * 7 5 3 9 9 H 1.48498 * 109.47039 * 209.99901 * 7 5 3 10 10 H 1.48496 * 109.47192 * 330.00031 * 7 5 3 11 11 C 1.46498 * 120.00175 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.91610 * 183.90512 * 11 2 1 13 13 C 1.55152 * 111.00654 * 307.80800 * 11 2 1 14 14 C 1.54338 * 103.02487 * 153.37993 * 13 11 2 15 15 N 1.47022 * 107.26004 * 338.14216 * 14 13 11 16 16 C 1.34778 * 125.64702 * 178.84880 * 15 14 13 17 17 O 1.21279 * 120.00231 * 179.69090 * 16 15 14 18 18 C 1.50701 * 119.99726 * 359.69052 * 16 15 14 19 19 C 1.53010 * 109.46958 * 179.97438 * 18 16 15 20 20 H 1.08998 * 109.51800 * 54.99892 * 19 18 16 21 21 C 1.53178 * 109.57268 * 175.15927 * 19 18 16 22 22 C 1.53172 * 109.03719 * 176.92000 * 21 19 18 23 23 C 1.53096 * 109.16127 * 303.01739 * 22 21 19 24 24 O 1.42910 * 109.41394 * 57.60838 * 23 22 21 25 25 C 1.42895 * 114.09678 * 298.84272 * 24 23 22 26 26 C 1.47424 * 108.70555 * 358.58206 * 15 14 13 27 27 H 1.08992 * 109.47158 * 275.16281 * 1 2 3 28 28 H 1.09002 * 109.47108 * 35.16533 * 1 2 3 29 29 H 1.09004 * 109.46715 * 155.16288 * 1 2 3 30 30 H 0.97001 * 119.99682 * 180.02562 * 6 5 3 31 31 H 1.08998 * 110.72318 * 271.93686 * 13 11 2 32 32 H 1.09001 * 110.72202 * 35.03330 * 13 11 2 33 33 H 1.08997 * 109.99381 * 218.66781 * 14 13 11 34 34 H 1.08999 * 109.77819 * 97.49159 * 14 13 11 35 35 H 1.09003 * 109.47072 * 60.00193 * 18 16 15 36 36 H 1.08997 * 109.47178 * 299.99958 * 18 16 15 37 37 H 1.09006 * 109.54021 * 296.78556 * 21 19 18 38 38 H 1.08996 * 109.54564 * 57.04829 * 21 19 18 39 39 H 1.08992 * 109.52353 * 183.11215 * 22 21 19 40 40 H 1.09001 * 109.57228 * 62.95149 * 22 21 19 41 41 H 1.08990 * 109.48105 * 297.62652 * 23 22 21 42 42 H 1.09001 * 109.47949 * 177.58779 * 23 22 21 43 43 H 1.09002 * 109.48125 * 301.17603 * 25 24 23 44 44 H 1.09002 * 109.48405 * 181.14187 * 25 24 23 45 45 H 1.09003 * 110.36531 * 143.19339 * 26 15 14 46 46 H 1.08998 * 110.36600 * 265.51451 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1639 1.2239 -0.3693 5 6 1.5402 2.3392 0.4747 6 7 0.4248 2.2563 1.1685 7 14 2.3031 4.0089 0.1289 8 1 1.7625 4.5457 -1.1458 9 1 1.9760 4.9417 1.2371 10 1 3.7773 3.8667 0.0204 11 6 2.1976 -1.2687 0.0006 12 1 3.2718 -1.0977 0.0698 13 6 1.7068 -2.1938 1.1453 14 6 2.0191 -3.6068 0.6088 15 7 2.1178 -3.5058 -0.8547 16 6 2.4013 -4.5208 -1.6948 17 8 2.4517 -4.3226 -2.8902 18 6 2.6556 -5.9022 -1.1486 19 6 2.9509 -6.8610 -2.3039 20 1 3.7763 -6.4707 -2.8992 21 6 3.3280 -8.2366 -1.7455 22 6 3.5456 -9.2064 -2.9110 23 6 2.2779 -9.2548 -3.7679 24 8 1.9661 -7.9388 -4.2297 25 6 1.7061 -7.0000 -3.1843 26 6 1.8490 -2.1116 -1.2515 27 1 -0.3633 0.0925 1.0234 28 1 -0.3633 0.8401 -0.5919 29 1 -0.3633 -0.9327 -0.4317 30 1 -0.0013 3.0623 1.4999 31 1 2.2592 -1.9969 2.0641 32 1 0.6358 -2.0719 1.3074 33 1 1.2175 -4.2939 0.8797 34 1 2.9655 -3.9570 1.0208 35 1 1.7746 -6.2467 -0.6071 36 1 3.5098 -5.8738 -0.4722 37 1 4.2457 -8.1546 -1.1631 38 1 2.5230 -8.6053 -1.1099 39 1 3.7603 -10.2015 -2.5217 40 1 4.3833 -8.8645 -3.5189 41 1 1.4498 -9.6361 -3.1707 42 1 2.4419 -9.9106 -4.6230 43 1 0.8705 -7.3518 -2.5792 44 1 1.4582 -6.0315 -3.6186 45 1 2.4849 -1.8265 -2.0897 46 1 0.7980 -1.9873 -1.5121 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980417633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:15 Heat of formation + Delta-G solvation = -85.742398 kcal Electronic energy + Delta-G solvation = -24617.742002 eV Core-core repulsion = 21120.819104 eV Total energy + Delta-G solvation = -3496.922898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.33789 -40.13904 -38.82963 -36.55283 -35.37248 -33.51930 -32.93187 -31.34011 -29.83017 -28.23431 -28.01540 -25.93033 -25.26258 -23.92341 -23.20035 -21.07282 -20.91718 -20.02789 -18.96005 -18.06818 -17.60599 -17.21171 -16.97267 -16.51784 -16.38812 -15.88476 -15.46621 -15.22589 -15.06670 -14.82288 -14.43305 -14.34835 -14.12834 -13.62684 -13.52157 -13.50011 -13.29402 -12.95165 -12.82979 -12.67208 -12.50335 -12.40476 -12.14885 -12.11417 -12.08847 -11.91548 -11.84582 -11.71950 -11.43476 -11.23487 -10.75030 -10.64910 -10.36094 -9.63047 -8.80145 -7.85554 -5.34954 1.45876 1.48157 1.55922 1.64816 1.98984 2.50221 3.00090 3.26102 3.49020 3.56854 3.78821 3.84598 3.93770 3.94416 4.06402 4.12317 4.20251 4.29678 4.35356 4.38501 4.45974 4.56869 4.61482 4.67832 4.73107 4.77657 4.79929 4.89291 4.90593 4.99492 5.02274 5.10675 5.13346 5.22074 5.24839 5.29539 5.30411 5.43015 5.45100 5.62721 5.69064 6.30077 6.31626 6.61236 7.11723 7.18755 7.82419 8.26336 9.17039 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.039115 B = 0.002764 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.661213 B =10126.191070 C =10290.136568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.602 5.602 3 C -0.269 4.269 4 H 0.069 0.931 5 C -0.047 4.047 6 N -0.933 5.933 7 Si 0.967 3.033 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.269 1.269 11 C 0.165 3.835 12 H 0.072 0.928 13 C -0.142 4.142 14 C 0.110 3.890 15 N -0.615 5.615 16 C 0.515 3.485 17 O -0.588 6.588 18 C -0.118 4.118 19 C -0.103 4.103 20 H 0.059 0.941 21 C -0.112 4.112 22 C -0.154 4.154 23 C 0.048 3.952 24 O -0.412 6.412 25 C 0.061 3.939 26 C 0.096 3.904 27 H 0.014 0.986 28 H 0.010 0.990 29 H 0.028 0.972 30 H 0.249 0.751 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.379 -24.753 -0.008 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.324 5.324 3 C -0.399 4.399 4 H 0.086 0.914 5 C -0.243 4.243 6 N -0.579 5.579 7 Si 0.795 3.205 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.193 1.193 11 C 0.057 3.943 12 H 0.090 0.910 13 C -0.182 4.182 14 C -0.012 4.012 15 N -0.349 5.349 16 C 0.306 3.694 17 O -0.469 6.469 18 C -0.157 4.157 19 C -0.122 4.122 20 H 0.077 0.923 21 C -0.150 4.150 22 C -0.192 4.192 23 C -0.029 4.029 24 O -0.331 6.331 25 C -0.015 4.015 26 C -0.029 4.029 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.318 -24.522 -0.785 24.912 hybrid contribution 0.023 1.657 -0.148 1.663 sum 4.341 -22.866 -0.933 23.293 Atomic orbital electron populations 1.20501 0.82670 0.95574 0.97959 1.43971 1.02031 1.00937 1.85421 1.19511 0.98761 0.86713 1.34915 0.91363 1.25736 0.98677 1.01687 0.98158 1.70206 1.21311 1.27752 1.38586 0.85272 0.78452 0.79952 0.76785 1.21656 1.21873 1.19346 1.21535 0.95713 0.84888 0.92212 0.91003 1.23053 1.02037 0.93839 0.99278 1.22205 1.03512 0.97577 0.77952 1.48631 1.68883 1.08458 1.08900 1.21225 0.75488 0.87188 0.85496 1.90672 1.54109 1.84856 1.17290 1.21707 1.06285 0.88379 0.99363 1.21492 0.98701 0.96171 0.95884 0.92266 1.21660 1.03292 0.92326 0.97703 1.22181 0.98169 1.01300 0.97508 1.22838 0.96810 0.83576 0.99632 1.87937 1.90454 1.20985 1.33720 1.22773 0.96212 0.92680 0.89859 1.22585 0.99682 0.81600 0.99054 0.96746 0.97083 0.95337 0.94132 0.89745 0.91665 0.88821 0.88555 0.86102 0.85812 0.89710 0.89818 0.88402 0.92263 0.92010 0.88215 0.92234 0.90521 0.93328 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.61 7.57 127.77 0.97 9.58 16 2 N -0.60 -29.46 2.96 -695.02 -2.05 -31.52 16 3 C -0.27 -14.62 9.60 84.03 0.81 -13.81 16 4 H 0.07 3.64 7.87 -2.91 -0.02 3.61 16 5 C -0.05 -2.59 5.08 84.86 0.43 -2.16 16 6 N -0.93 -54.16 10.77 21.65 0.23 -53.93 16 7 Si 0.97 44.87 29.58 68.60 2.03 46.90 16 8 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 9 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 11 C 0.17 6.40 3.54 46.38 0.16 6.57 16 12 H 0.07 2.84 7.96 -2.39 -0.02 2.82 16 13 C -0.14 -4.27 6.50 31.79 0.21 -4.06 16 14 C 0.11 2.34 6.49 86.73 0.56 2.90 16 15 N -0.62 -17.58 3.33 -811.77 -2.70 -20.28 16 16 C 0.51 14.51 7.58 87.66 0.66 15.18 16 17 O -0.59 -22.08 14.24 -3.03 -0.04 -22.12 16 18 C -0.12 -1.99 4.38 29.85 0.13 -1.85 16 19 C -0.10 -1.98 2.03 -10.70 -0.02 -2.00 16 20 H 0.06 1.48 7.96 -2.39 -0.02 1.46 16 21 C -0.11 -1.35 5.32 30.71 0.16 -1.19 16 22 C -0.15 -1.94 6.14 30.68 0.19 -1.75 16 23 C 0.05 0.75 6.84 72.01 0.49 1.24 16 24 O -0.41 -10.34 10.77 -148.98 -1.60 -11.94 16 25 C 0.06 1.44 5.84 72.01 0.42 1.86 16 26 C 0.10 3.54 6.47 86.86 0.56 4.10 16 27 H 0.01 0.75 7.33 -2.39 -0.02 0.73 16 28 H 0.01 0.56 7.38 -2.39 -0.02 0.55 16 29 H 0.03 1.19 6.38 -2.38 -0.02 1.18 16 30 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.06 2.12 6.99 -2.39 -0.02 2.11 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 2.36 6.02 -2.39 -0.01 2.35 16 45 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 46 H 0.05 2.06 6.42 -2.39 -0.02 2.05 16 Total: -1.00 -70.95 354.67 2.54 -68.41 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.94 Total: 9.88 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 5.74 Total: 14.60 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -4.52 Total: -105.73 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.65 Total: -34.06 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -70.95 2.54 -68.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980417633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.336 kcal (2) G-P(sol) polarization free energy of solvation -70.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds