Wall clock time and date at job start Tue Mar 31 2020 03:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47036 * 2 1 4 4 C 1.42896 * 114.00090 * 180.02562 * 3 2 1 5 5 C 1.53779 * 113.61726 * 150.00024 * 4 3 2 6 6 C 1.53783 * 87.07824 * 89.11653 * 5 4 3 7 7 C 1.50699 * 113.61331 * 139.98547 * 6 5 4 8 8 O 1.21277 * 120.00015 * 1.52390 * 7 6 5 9 9 N 1.34778 * 119.99984 * 181.52803 * 7 6 5 10 10 C 1.48209 * 119.97152 * 180.02562 * 9 7 6 11 11 C 1.47145 * 110.34413 * 102.46259 * 10 9 7 12 12 C 1.53243 * 111.81310 * 58.22705 * 11 10 9 13 13 N 1.43462 * 108.26428 * 281.67964 * 12 11 10 14 14 C 1.36936 * 118.93883 * 273.78134 * 13 12 11 15 15 H 1.08003 * 119.99731 * 26.79715 * 14 13 12 16 16 C 1.38809 * 119.99905 * 206.79337 * 14 13 12 17 17 N 1.31622 * 120.00122 * 26.38697 * 16 14 13 18 18 Si 1.86795 * 120.00000 * 206.37947 * 16 14 13 19 19 H 1.48507 * 109.47204 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.47199 * 60.00602 * 18 16 14 21 21 H 1.48497 * 109.47468 * 300.00137 * 18 16 14 22 22 C 1.48858 * 122.12143 * 93.50148 * 13 12 11 23 23 C 1.43622 * 119.97145 * 359.97438 * 9 7 6 24 24 C 1.53773 * 87.17712 * 25.39072 * 6 5 4 25 25 H 1.09000 * 109.47224 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47056 * 299.99438 * 1 2 3 27 27 H 1.08994 * 109.47517 * 60.00024 * 1 2 3 28 28 H 1.09000 * 109.46589 * 240.00328 * 2 1 3 29 29 H 1.08993 * 109.47110 * 120.00319 * 2 1 3 30 30 H 1.09004 * 112.90588 * 18.74667 * 4 3 2 31 31 H 1.08997 * 113.61204 * 334.56966 * 5 4 3 32 32 H 1.08993 * 113.68770 * 203.67226 * 5 4 3 33 33 H 1.09004 * 113.61183 * 270.79776 * 6 5 4 34 34 H 1.09005 * 109.32241 * 222.72736 * 10 9 7 35 35 H 1.08997 * 109.32812 * 342.36940 * 10 9 7 36 36 H 1.09000 * 109.00736 * 178.90289 * 11 10 9 37 37 H 1.08999 * 109.00694 * 297.76538 * 11 10 9 38 38 H 1.08998 * 109.49214 * 162.04051 * 12 11 10 39 39 H 1.09006 * 109.73546 * 41.46166 * 12 11 10 40 40 H 0.97001 * 119.99482 * 5.76129 * 17 16 14 41 41 H 1.08993 * 109.48355 * 80.87988 * 22 13 12 42 42 H 1.08997 * 109.47988 * 200.91933 * 22 13 12 43 43 H 1.08997 * 108.87483 * 149.90816 * 23 9 7 44 44 H 1.08997 * 108.87353 * 31.47526 * 23 9 7 45 45 H 1.08999 * 113.61456 * 89.15671 * 24 6 5 46 46 H 1.08999 * 113.61642 * 220.06110 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9483 2.7254 -0.7051 6 6 3.8396 3.4326 0.6561 7 6 4.9841 4.3702 0.9424 8 8 5.8601 4.5270 0.1185 9 7 5.0342 5.0344 2.1141 10 6 6.1598 5.9568 2.3947 11 6 5.7344 7.3535 2.2117 12 6 4.5510 7.7116 3.1171 13 7 3.3568 7.1771 2.5286 14 6 2.6913 7.9192 1.5897 15 1 3.2289 8.6385 0.9897 16 6 1.3259 7.7469 1.4092 17 7 0.5806 7.3106 2.4024 18 14 0.5461 8.1344 -0.2434 19 1 -0.9136 7.8693 -0.1763 20 1 1.1573 7.2787 -1.2920 21 1 0.7743 9.5636 -0.5756 22 6 2.8212 5.8392 2.9013 23 6 3.9962 4.8486 3.0891 24 6 4.0016 2.0471 1.3033 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9288 0.5459 -0.3236 31 1 3.2634 3.1175 -1.4568 32 1 4.9714 2.6359 -1.0701 33 1 2.8651 3.8870 0.8354 34 1 6.4959 5.8137 3.4217 35 1 6.9820 5.7406 1.7127 36 1 6.5714 8.0126 2.4421 37 1 5.4415 7.5022 1.1724 38 1 4.4692 8.7956 3.1970 39 1 4.7002 7.2787 4.1063 40 1 0.9688 7.1892 3.2830 41 1 2.2603 5.9186 3.8325 42 1 2.1640 5.4776 2.1105 43 1 4.4184 4.9871 4.0844 44 1 3.6149 3.8307 3.0086 45 1 5.0394 1.7706 1.4890 46 1 3.3596 1.8925 2.1705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981097607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:16 Heat of formation + Delta-G solvation = -32.970607 kcal Electronic energy + Delta-G solvation = -25958.171216 eV Core-core repulsion = 22463.536675 eV Total energy + Delta-G solvation = -3494.634541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.41328 -38.74540 -37.10353 -35.73601 -34.36546 -32.82312 -30.96454 -30.73298 -27.71023 -26.26156 -25.65981 -24.85536 -23.64743 -22.90887 -22.02738 -19.76766 -19.71591 -18.51435 -17.50555 -16.86523 -16.21998 -16.03100 -15.62175 -15.44509 -14.60601 -14.48556 -14.16980 -13.63606 -13.44780 -13.39293 -13.06308 -12.90467 -12.66369 -12.59960 -12.33852 -12.17128 -11.96438 -11.59766 -11.46511 -11.32519 -11.18671 -11.05461 -10.66535 -10.57419 -10.36614 -10.25680 -10.22961 -10.19466 -9.96169 -9.51202 -9.33934 -9.12864 -8.28511 -8.08338 -6.85080 -6.03019 -3.19989 3.06914 3.49978 3.52588 3.58189 3.59090 3.74414 4.55163 4.63714 4.68321 4.84845 4.88954 4.99027 5.13280 5.17791 5.24240 5.26120 5.33545 5.47214 5.57249 5.58773 5.64890 5.73705 5.77243 5.82504 5.84692 5.88332 6.00793 6.01961 6.05323 6.13549 6.20082 6.22829 6.37347 6.41969 6.48783 6.71823 6.78694 6.96049 7.02956 7.23058 7.26200 7.95899 8.09497 8.60754 8.68887 9.19097 9.87998 10.27544 11.23385 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.006337 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.935279 B = 4417.365559 C = 5816.839800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.362 6.362 4 C 0.066 3.934 5 C -0.117 4.117 6 C -0.126 4.126 7 C 0.532 3.468 8 O -0.558 6.558 9 N -0.583 5.583 10 C 0.129 3.871 11 C -0.169 4.169 12 C 0.165 3.835 13 N -0.593 5.593 14 C -0.352 4.352 15 H 0.052 0.948 16 C -0.018 4.018 17 N -0.913 5.913 18 Si 1.054 2.946 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.293 1.293 22 C 0.138 3.862 23 C 0.089 3.911 24 C -0.142 4.142 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.030 0.970 40 H 0.267 0.733 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 -14.081 0.199 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.281 6.281 4 C 0.008 3.992 5 C -0.155 4.155 6 C -0.147 4.147 7 C 0.320 3.680 8 O -0.437 6.437 9 N -0.314 5.314 10 C 0.007 3.993 11 C -0.210 4.210 12 C 0.037 3.963 13 N -0.316 5.316 14 C -0.481 4.481 15 H 0.070 0.930 16 C -0.220 4.220 17 N -0.553 5.553 18 Si 0.884 3.116 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.220 1.220 22 C 0.011 3.989 23 C -0.037 4.037 24 C -0.180 4.180 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.585 -13.869 -1.054 14.645 hybrid contribution 1.524 0.093 0.939 1.792 sum 6.108 -13.776 -0.116 15.070 Atomic orbital electron populations 1.21752 0.93690 1.02005 1.03581 1.22515 0.95682 0.83957 0.99764 1.87975 1.19571 1.26051 1.94479 1.23021 0.81656 0.97967 0.96560 1.23085 1.02330 0.93822 0.96256 1.22683 0.99325 0.94160 0.98486 1.20380 0.86469 0.80305 0.80829 1.90593 1.40578 1.66602 1.45907 1.47338 1.23857 1.43002 1.17220 1.20542 0.88791 0.89905 1.00038 1.21757 0.99978 0.95418 1.03853 1.20160 0.86338 0.96992 0.92810 1.43656 1.26853 1.13762 1.47338 1.19892 0.92195 1.21996 1.14040 0.92977 1.25697 0.92543 0.99760 1.04027 1.70825 1.36954 1.46413 1.01156 0.83685 0.76166 0.75940 0.75803 1.21072 1.22002 1.22047 1.22099 0.92816 0.84529 0.99428 1.21952 0.90314 1.00044 0.91387 1.23419 1.01590 0.94719 0.98271 0.91309 0.91557 0.91728 0.93533 0.93496 0.90727 0.90117 0.87914 0.86084 0.92283 0.90512 0.92670 0.91241 0.93573 0.95167 0.92145 0.94834 0.91226 0.92009 0.91100 0.89265 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 37.16 0.38 -1.09 16 2 C 0.06 0.60 6.50 37.16 0.24 0.84 16 3 O -0.36 -5.06 10.27 -35.23 -0.36 -5.42 16 4 C 0.07 0.84 4.38 -25.83 -0.11 0.73 16 5 C -0.12 -1.77 7.23 -25.92 -0.19 -1.95 16 6 C -0.13 -2.10 2.74 -90.96 -0.25 -2.35 16 7 C 0.53 10.25 7.20 -10.99 -0.08 10.17 16 8 O -0.56 -12.12 15.34 5.56 0.09 -12.04 16 9 N -0.58 -10.69 2.46 -176.69 -0.43 -11.13 16 10 C 0.13 2.22 5.69 -5.91 -0.03 2.18 16 11 C -0.17 -3.18 5.63 -29.42 -0.17 -3.34 16 12 C 0.17 3.43 5.59 -5.52 -0.03 3.40 16 13 N -0.59 -14.43 2.40 -172.38 -0.41 -14.84 16 14 C -0.35 -9.81 9.11 -15.06 -0.14 -9.95 16 15 H 0.05 1.51 7.96 -52.48 -0.42 1.09 16 16 C -0.02 -0.51 4.60 -17.43 -0.08 -0.59 16 17 N -0.91 -26.89 12.63 55.49 0.70 -26.19 16 18 Si 1.05 25.93 29.99 -169.99 -5.10 20.83 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 C 0.14 3.04 5.01 -1.78 -0.01 3.03 16 23 C 0.09 1.54 4.95 -4.61 -0.02 1.52 16 24 C -0.14 -1.84 6.64 -25.83 -0.17 -2.02 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.10 1.53 7.45 -51.93 -0.39 1.14 16 33 H 0.12 2.31 6.98 -51.93 -0.36 1.94 16 34 H 0.06 0.86 8.06 -51.93 -0.42 0.45 16 35 H 0.08 1.35 7.12 -51.93 -0.37 0.98 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.57 7.90 -51.93 -0.41 1.16 16 38 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 39 H 0.03 0.57 7.58 -51.93 -0.39 0.17 16 40 H 0.27 7.85 6.37 -40.82 -0.26 7.59 16 41 H 0.03 0.77 7.11 -51.93 -0.37 0.40 16 42 H 0.07 1.74 6.09 -51.93 -0.32 1.42 16 43 H 0.06 0.97 7.73 -51.93 -0.40 0.56 16 44 H 0.07 1.09 5.59 -51.93 -0.29 0.80 16 45 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 46 H 0.08 1.00 7.61 -51.93 -0.40 0.60 16 LS Contribution 354.50 15.07 5.34 5.34 Total: -1.00 -32.38 354.50 -8.63 -41.01 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.79 Total: 1.87 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.66 Total: 0.57 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.15 Total: -52.16 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.28 Total: -17.46 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.10 Total: 20.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.38 -8.63 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981097607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.038 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds