Wall clock time and date at job start Tue Mar 31 2020 03:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47036 * 2 1 4 4 C 1.42896 * 114.00090 * 180.02562 * 3 2 1 5 5 C 1.53779 * 113.61726 * 150.00024 * 4 3 2 6 6 C 1.53783 * 87.07824 * 89.11653 * 5 4 3 7 7 C 1.50699 * 113.61331 * 139.98547 * 6 5 4 8 8 O 1.21277 * 120.00015 * 1.52390 * 7 6 5 9 9 N 1.34778 * 119.99984 * 181.52803 * 7 6 5 10 10 C 1.48209 * 119.97152 * 180.02562 * 9 7 6 11 11 C 1.47145 * 110.34413 * 102.46259 * 10 9 7 12 12 C 1.53243 * 111.81310 * 58.22705 * 11 10 9 13 13 N 1.43462 * 108.26428 * 281.67964 * 12 11 10 14 14 C 1.36936 * 118.93883 * 273.78134 * 13 12 11 15 15 H 1.08003 * 119.99731 * 26.79715 * 14 13 12 16 16 C 1.38809 * 119.99905 * 206.79337 * 14 13 12 17 17 N 1.31622 * 120.00122 * 26.38697 * 16 14 13 18 18 Si 1.86795 * 120.00000 * 206.37947 * 16 14 13 19 19 H 1.48507 * 109.47204 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.47199 * 60.00602 * 18 16 14 21 21 H 1.48497 * 109.47468 * 300.00137 * 18 16 14 22 22 C 1.48858 * 122.12143 * 93.50148 * 13 12 11 23 23 C 1.43622 * 119.97145 * 359.97438 * 9 7 6 24 24 C 1.53773 * 87.17712 * 25.39072 * 6 5 4 25 25 H 1.09000 * 109.47224 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47056 * 299.99438 * 1 2 3 27 27 H 1.08994 * 109.47517 * 60.00024 * 1 2 3 28 28 H 1.09000 * 109.46589 * 240.00328 * 2 1 3 29 29 H 1.08993 * 109.47110 * 120.00319 * 2 1 3 30 30 H 1.09004 * 112.90588 * 18.74667 * 4 3 2 31 31 H 1.08997 * 113.61204 * 334.56966 * 5 4 3 32 32 H 1.08993 * 113.68770 * 203.67226 * 5 4 3 33 33 H 1.09004 * 113.61183 * 270.79776 * 6 5 4 34 34 H 1.09005 * 109.32241 * 222.72736 * 10 9 7 35 35 H 1.08997 * 109.32812 * 342.36940 * 10 9 7 36 36 H 1.09000 * 109.00736 * 178.90289 * 11 10 9 37 37 H 1.08999 * 109.00694 * 297.76538 * 11 10 9 38 38 H 1.08998 * 109.49214 * 162.04051 * 12 11 10 39 39 H 1.09006 * 109.73546 * 41.46166 * 12 11 10 40 40 H 0.97001 * 119.99482 * 5.76129 * 17 16 14 41 41 H 1.08993 * 109.48355 * 80.87988 * 22 13 12 42 42 H 1.08997 * 109.47988 * 200.91933 * 22 13 12 43 43 H 1.08997 * 108.87483 * 149.90816 * 23 9 7 44 44 H 1.08997 * 108.87353 * 31.47526 * 23 9 7 45 45 H 1.08999 * 113.61456 * 89.15671 * 24 6 5 46 46 H 1.08999 * 113.61642 * 220.06110 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9483 2.7254 -0.7051 6 6 3.8396 3.4326 0.6561 7 6 4.9841 4.3702 0.9424 8 8 5.8601 4.5270 0.1185 9 7 5.0342 5.0344 2.1141 10 6 6.1598 5.9568 2.3947 11 6 5.7344 7.3535 2.2117 12 6 4.5510 7.7116 3.1171 13 7 3.3568 7.1771 2.5286 14 6 2.6913 7.9192 1.5897 15 1 3.2289 8.6385 0.9897 16 6 1.3259 7.7469 1.4092 17 7 0.5806 7.3106 2.4024 18 14 0.5461 8.1344 -0.2434 19 1 -0.9136 7.8693 -0.1763 20 1 1.1573 7.2787 -1.2920 21 1 0.7743 9.5636 -0.5756 22 6 2.8212 5.8392 2.9013 23 6 3.9962 4.8486 3.0891 24 6 4.0016 2.0471 1.3033 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9288 0.5459 -0.3236 31 1 3.2634 3.1175 -1.4568 32 1 4.9714 2.6359 -1.0701 33 1 2.8651 3.8870 0.8354 34 1 6.4959 5.8137 3.4217 35 1 6.9820 5.7406 1.7127 36 1 6.5714 8.0126 2.4421 37 1 5.4415 7.5022 1.1724 38 1 4.4692 8.7956 3.1970 39 1 4.7002 7.2787 4.1063 40 1 0.9688 7.1892 3.2830 41 1 2.2603 5.9186 3.8325 42 1 2.1640 5.4776 2.1105 43 1 4.4184 4.9871 4.0844 44 1 3.6149 3.8307 3.0086 45 1 5.0394 1.7706 1.4890 46 1 3.3596 1.8925 2.1705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981097607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:15 Heat of formation + Delta-G solvation = -52.720625 kcal Electronic energy + Delta-G solvation = -25959.027641 eV Core-core repulsion = 22463.536675 eV Total energy + Delta-G solvation = -3495.490966 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76733 -39.99169 -38.67899 -36.87925 -36.13790 -34.44418 -32.69279 -31.77272 -29.38849 -27.74904 -26.77683 -26.40052 -25.53591 -23.70358 -23.47863 -21.54276 -20.93631 -19.90155 -19.37902 -18.34746 -17.58967 -17.28845 -16.77691 -16.52788 -16.18331 -16.07264 -15.75345 -15.53939 -15.02235 -14.64177 -14.40968 -14.29492 -14.05368 -13.90652 -13.58775 -13.41079 -13.38180 -12.96604 -12.78442 -12.64719 -12.57813 -12.44583 -12.22320 -12.05961 -12.03765 -11.91518 -11.82829 -11.59320 -11.40652 -11.31907 -10.68393 -10.43175 -10.35312 -9.61634 -8.89075 -8.21906 -5.37969 1.50202 1.56808 1.57960 1.75585 2.15353 2.60591 2.63421 3.16535 3.42450 3.52911 3.59539 3.62793 3.76386 3.98082 4.09958 4.16970 4.22656 4.26690 4.29820 4.36581 4.41118 4.47659 4.53821 4.60805 4.67359 4.69208 4.75836 4.82539 4.85883 4.95776 4.96647 5.00105 5.04461 5.07803 5.13867 5.15941 5.23511 5.31075 5.40963 5.71760 5.85669 6.36798 6.40985 6.50202 7.13697 7.20126 7.81489 8.19530 9.00303 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.006337 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.935279 B = 4417.365559 C = 5816.839800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.393 6.393 4 C 0.079 3.921 5 C -0.122 4.122 6 C -0.136 4.136 7 C 0.524 3.476 8 O -0.588 6.588 9 N -0.586 5.586 10 C 0.125 3.875 11 C -0.154 4.154 12 C 0.161 3.839 13 N -0.609 5.609 14 C -0.354 4.354 15 H 0.033 0.967 16 C -0.062 4.062 17 N -0.934 5.934 18 Si 1.094 2.906 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.278 1.278 22 C 0.144 3.856 23 C 0.101 3.899 24 C -0.124 4.124 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.021 0.979 38 H 0.031 0.969 39 H 0.060 0.940 40 H 0.258 0.742 41 H 0.025 0.975 42 H 0.031 0.969 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.994 -16.106 1.169 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.313 6.313 4 C 0.021 3.979 5 C -0.160 4.160 6 C -0.157 4.157 7 C 0.314 3.686 8 O -0.469 6.469 9 N -0.315 5.315 10 C 0.004 3.996 11 C -0.195 4.195 12 C 0.034 3.966 13 N -0.332 5.332 14 C -0.485 4.485 15 H 0.051 0.949 16 C -0.260 4.260 17 N -0.576 5.576 18 Si 0.920 3.080 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.204 1.204 22 C 0.018 3.982 23 C -0.025 4.025 24 C -0.162 4.162 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.126 0.874 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.914 -15.891 -0.059 16.956 hybrid contribution 1.142 0.783 0.636 1.524 sum 7.055 -15.108 0.577 16.684 Atomic orbital electron populations 1.21794 0.93604 1.03370 1.02299 1.22761 0.95851 0.82577 1.01387 1.87951 1.20254 1.28525 1.94571 1.22948 0.81518 0.97983 0.95495 1.23115 1.02233 0.95445 0.95193 1.22679 0.96720 0.95499 1.00815 1.20872 0.86614 0.80486 0.80658 1.90567 1.41939 1.67675 1.46760 1.47491 1.24126 1.42765 1.17162 1.20686 0.88248 0.88314 1.02319 1.21572 1.00082 0.97577 1.00255 1.20318 0.85565 0.96311 0.94415 1.43864 1.27572 1.14619 1.47158 1.19980 0.92335 1.21829 1.14326 0.94949 1.26684 0.93304 1.00079 1.05910 1.70910 1.37114 1.48423 1.01131 0.83126 0.75379 0.76564 0.72927 1.21077 1.22020 1.20397 1.21980 0.94271 0.84585 0.97393 1.21835 0.88561 0.99549 0.92524 1.23396 1.02884 0.91320 0.98622 0.88623 0.92922 0.92920 0.91865 0.91753 0.87394 0.91949 0.87700 0.89107 0.88220 0.90803 0.89498 0.95958 0.95036 0.92188 0.93119 0.95708 0.95007 0.88831 0.88845 0.87423 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 10.28 71.98 0.74 -2.02 16 2 C 0.05 0.93 6.50 71.98 0.47 1.40 16 3 O -0.39 -10.55 10.27 -148.98 -1.53 -12.08 16 4 C 0.08 1.84 4.38 31.18 0.14 1.98 16 5 C -0.12 -3.66 7.23 31.12 0.22 -3.44 16 6 C -0.14 -4.53 2.74 -11.02 -0.03 -4.56 16 7 C 0.52 19.97 7.20 87.66 0.63 20.60 16 8 O -0.59 -25.56 15.34 -3.02 -0.05 -25.61 16 9 N -0.59 -20.55 2.46 -831.32 -2.04 -22.60 16 10 C 0.13 4.00 5.69 84.23 0.48 4.48 16 11 C -0.15 -5.60 5.63 28.85 0.16 -5.44 16 12 C 0.16 6.51 5.59 87.02 0.49 7.00 16 13 N -0.61 -29.93 2.40 -699.29 -1.68 -31.60 16 14 C -0.35 -20.35 9.11 84.03 0.77 -19.58 16 15 H 0.03 1.96 7.96 -2.91 -0.02 1.93 16 16 C -0.06 -3.58 4.60 84.86 0.39 -3.19 16 17 N -0.93 -56.41 12.63 21.65 0.27 -56.14 16 18 Si 1.09 53.83 29.99 68.60 2.06 55.89 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 20 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 C 0.14 6.39 5.01 86.55 0.43 6.82 16 23 C 0.10 3.29 4.95 87.53 0.43 3.73 16 24 C -0.12 -2.94 6.64 31.18 0.21 -2.73 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.11 1.83 7.87 -2.38 -0.02 1.81 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.10 3.08 7.45 -2.39 -0.02 3.06 16 33 H 0.09 3.61 6.98 -2.39 -0.02 3.59 16 34 H 0.10 2.43 8.06 -2.38 -0.02 2.41 16 35 H 0.07 2.45 7.12 -2.39 -0.02 2.43 16 36 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.02 1.00 7.90 -2.39 -0.02 0.98 16 38 H 0.03 1.35 8.02 -2.39 -0.02 1.33 16 39 H 0.06 2.08 7.58 -2.38 -0.02 2.07 16 40 H 0.26 15.60 6.37 -92.71 -0.59 15.01 16 41 H 0.03 1.15 7.11 -2.39 -0.02 1.13 16 42 H 0.03 1.64 6.09 -2.39 -0.01 1.62 16 43 H 0.09 2.53 7.73 -2.39 -0.02 2.51 16 44 H 0.09 2.66 5.59 -2.39 -0.01 2.65 16 45 H 0.11 2.19 8.09 -2.39 -0.02 2.17 16 46 H 0.09 1.98 7.61 -2.39 -0.02 1.96 16 Total: -1.00 -73.38 354.50 3.69 -69.69 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 1.12 Total: 17.40 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 5.53 Total: 5.04 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -3.45 Total: -110.34 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -1.58 Total: -37.69 kcal Atomic # 14 Polarization: 53.83 SS G_CDS: 2.06 Total: 55.89 kcal Total: -73.38 3.69 -69.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981097607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.971 kcal (2) G-P(sol) polarization free energy of solvation -73.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds