Wall clock time and date at job start Tue Mar 31 2020 03:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00085 * 2 1 4 4 H 1.09000 * 110.01658 * 28.61055 * 3 2 1 5 5 C 1.54263 * 110.07567 * 267.19186 * 3 2 1 6 6 C 1.54885 * 104.19851 * 217.08250 * 5 3 2 7 7 C 1.54897 * 102.74811 * 37.94326 * 6 5 3 8 8 C 1.53874 * 110.03435 * 150.00002 * 3 2 1 9 9 H 1.09000 * 110.03362 * 238.62399 * 8 3 2 10 10 C 1.50704 * 110.03130 * 0.02562 * 8 3 2 11 11 O 1.21279 * 120.00279 * 87.03320 * 10 8 3 12 12 N 1.34781 * 119.99769 * 267.04071 * 10 8 3 13 13 C 1.48215 * 119.96830 * 185.18182 * 12 10 8 14 14 C 1.47602 * 110.04559 * 102.54518 * 13 12 10 15 15 C 1.53794 * 111.84031 * 58.43141 * 14 13 12 16 16 N 1.43466 * 107.96372 * 281.54437 * 15 14 13 17 17 C 1.36930 * 118.93923 * 273.63470 * 16 15 14 18 18 H 1.07994 * 120.00411 * 22.99816 * 17 16 15 19 19 C 1.38820 * 119.99782 * 202.99877 * 17 16 15 20 20 N 1.31619 * 119.99802 * 17.60729 * 19 17 16 21 21 Si 1.86796 * 119.99844 * 197.60561 * 19 17 16 22 22 H 1.48489 * 109.47244 * 60.00164 * 21 19 17 23 23 H 1.48505 * 109.46988 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47426 * 299.99690 * 21 19 17 25 25 C 1.48857 * 122.11720 * 93.60705 * 16 15 14 26 26 C 1.43620 * 119.97210 * 5.44694 * 12 10 8 27 27 H 1.09004 * 109.47431 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47104 * 299.99940 * 1 2 3 29 29 H 1.09003 * 109.47308 * 59.99843 * 1 2 3 30 30 H 1.09005 * 110.48327 * 335.75800 * 5 3 2 31 31 H 1.08996 * 110.48943 * 98.26992 * 5 3 2 32 32 H 1.08999 * 110.75910 * 156.25131 * 6 5 3 33 33 H 1.08998 * 110.76029 * 279.62891 * 6 5 3 34 34 H 1.09002 * 110.48414 * 203.38523 * 7 6 5 35 35 H 1.08990 * 110.49035 * 80.73666 * 7 6 5 36 36 H 1.09001 * 109.32432 * 222.77970 * 13 12 10 37 37 H 1.09006 * 109.32219 * 342.24223 * 13 12 10 38 38 H 1.09004 * 109.10150 * 297.76397 * 14 13 12 39 39 H 1.09001 * 108.84787 * 178.93529 * 14 13 12 40 40 H 1.09006 * 109.76347 * 161.92625 * 15 14 13 41 41 H 1.09001 * 109.76314 * 41.16314 * 15 14 13 42 42 H 0.96998 * 119.99952 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.48099 * 200.65731 * 25 16 15 44 44 H 1.09003 * 109.47837 * 80.63306 * 25 16 15 45 45 H 1.09006 * 108.86935 * 31.42946 * 26 12 10 46 46 H 1.09000 * 108.87375 * 149.86443 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 0.4904 5 6 2.2904 1.7603 -1.4472 6 6 3.6248 2.5405 -1.3485 7 6 4.4265 1.7166 -0.3103 8 6 3.3683 1.2778 0.7228 9 1 3.3578 1.9708 1.5641 10 6 3.6669 -0.1177 1.2073 11 8 4.2191 -0.9094 0.4730 12 7 3.3202 -0.4859 2.4566 13 6 3.7154 -1.8180 2.9724 14 6 4.8676 -1.6856 3.8853 15 6 4.5548 -0.7566 5.0704 16 7 4.6515 0.5981 4.6081 17 6 5.8735 1.2158 4.6178 18 1 6.7774 0.6250 4.6028 19 6 5.9505 2.6016 4.6469 20 7 4.9031 3.3113 5.0098 21 14 7.5405 3.4588 4.1712 22 1 7.8916 3.1094 2.7714 23 1 7.3636 4.9289 4.2855 24 1 8.6305 3.0199 5.0793 25 6 3.4663 1.3535 4.1178 26 6 2.5632 0.4106 3.2848 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.4009 0.8972 -2.1037 31 1 1.4917 2.4103 -1.8042 32 1 4.1371 2.5529 -2.3105 33 1 3.4535 3.5547 -0.9877 34 1 5.1876 2.3368 0.1631 35 1 4.8818 0.8466 -0.7832 36 1 2.8761 -2.2605 3.5090 37 1 3.9858 -2.4629 2.1362 38 1 5.7162 -1.2825 3.3326 39 1 5.1294 -2.6724 4.2673 40 1 5.2751 -0.9252 5.8710 41 1 3.5459 -0.9507 5.4346 42 1 4.9570 4.2796 5.0305 43 1 3.7971 2.1843 3.4947 44 1 2.9034 1.7385 4.9681 45 1 1.9142 1.0139 2.6499 46 1 1.9436 -0.1750 3.9639 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981486012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:10 Heat of formation + Delta-G solvation = -54.050591 kcal Electronic energy + Delta-G solvation = -26826.336284 eV Core-core repulsion = 23330.787646 eV Total energy + Delta-G solvation = -3495.548638 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.17572 -38.27365 -36.77794 -35.55719 -34.09384 -32.69691 -30.84960 -29.07732 -28.14296 -27.41496 -26.07299 -25.31857 -23.60613 -22.55395 -20.72714 -20.25653 -19.68693 -18.26438 -17.31809 -16.50323 -16.11085 -15.88039 -15.48187 -15.07094 -14.65141 -14.32968 -14.00381 -13.76200 -13.60042 -13.54154 -13.15938 -12.77261 -12.44868 -12.30202 -12.15922 -11.78922 -11.38864 -11.34356 -11.32391 -11.12345 -10.97473 -10.91659 -10.71626 -10.60304 -10.52975 -10.36194 -10.22359 -10.08701 -9.81936 -9.68349 -9.47753 -9.03676 -8.43843 -7.84493 -6.70710 -5.78851 -3.16913 3.32819 3.38570 3.43889 3.47570 3.67084 3.87516 4.51786 4.64748 4.71226 5.01755 5.20749 5.28144 5.32235 5.33788 5.37469 5.46198 5.57528 5.62305 5.66131 5.74070 5.76228 5.80031 5.82824 5.90537 5.94956 6.00696 6.10561 6.16428 6.19535 6.20964 6.37927 6.41104 6.51458 6.60154 6.62223 6.86152 7.04610 7.10117 7.27500 7.45532 7.50636 7.81367 8.19336 8.43845 8.93690 9.21575 9.90280 10.35035 11.29298 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.006905 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.438908 B = 4053.808525 C = 4991.960735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.373 6.373 3 C 0.098 3.902 4 H 0.069 0.931 5 C -0.143 4.143 6 C -0.120 4.120 7 C -0.111 4.111 8 C -0.116 4.116 9 H 0.107 0.893 10 C 0.552 3.448 11 O -0.556 6.556 12 N -0.583 5.583 13 C 0.131 3.869 14 C -0.168 4.168 15 C 0.163 3.837 16 N -0.590 5.590 17 C -0.249 4.249 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.909 5.909 21 Si 0.895 3.105 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.163 3.837 26 C 0.086 3.914 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.033 0.967 42 H 0.253 0.747 43 H 0.077 0.923 44 H 0.039 0.961 45 H 0.059 0.941 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.512 -3.293 -8.369 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.291 6.291 3 C 0.040 3.960 4 H 0.087 0.913 5 C -0.180 4.180 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.137 4.137 9 H 0.125 0.875 10 C 0.341 3.659 11 O -0.435 6.435 12 N -0.314 5.314 13 C 0.009 3.991 14 C -0.210 4.210 15 C 0.035 3.965 16 N -0.311 5.311 17 C -0.378 4.378 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.554 5.554 21 Si 0.725 3.275 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.037 3.963 26 C -0.040 4.040 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.159 -3.707 -8.695 13.162 hybrid contribution 0.563 0.887 -0.039 1.051 sum -8.596 -2.821 -8.734 12.575 Atomic orbital electron populations 1.22746 0.81697 1.02446 0.99604 1.88071 1.19031 1.27157 1.94851 1.22734 0.93281 0.84720 0.95314 0.91342 1.22860 0.97854 1.00409 0.96918 1.22410 0.95360 0.98627 0.99394 1.22331 0.96767 1.00582 0.95203 1.22179 0.95136 0.96541 0.99859 0.87538 1.19779 0.76884 0.88398 0.80871 1.90555 1.44062 1.53483 1.55352 1.47193 1.54672 1.16399 1.13089 1.20581 0.97034 0.84004 0.97462 1.21968 0.99176 0.99893 0.99914 1.20278 0.97972 0.85324 0.92973 1.43629 1.05645 1.09363 1.72471 1.19150 0.84869 0.89369 1.44443 0.91788 1.24870 0.97054 0.96904 1.00672 1.70034 1.29569 1.05360 1.50442 0.86469 0.83640 0.78472 0.78891 1.21074 1.21656 1.20982 1.21954 0.86789 0.92184 0.95402 1.22082 0.94486 0.93424 0.94037 0.89992 0.94123 0.94372 0.90346 0.91658 0.91196 0.91290 0.90849 0.89628 0.92521 0.90562 0.91425 0.92870 0.93694 0.94885 0.93716 0.90519 0.94265 0.92253 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.85 101.05 1.10 1.45 16 2 O -0.37 -5.72 8.82 -35.23 -0.31 -6.03 16 3 C 0.10 1.40 2.80 -25.62 -0.07 1.33 16 4 H 0.07 0.86 7.80 -51.93 -0.41 0.45 16 5 C -0.14 -1.78 6.56 -25.08 -0.16 -1.95 16 6 C -0.12 -1.53 6.91 -24.74 -0.17 -1.70 16 7 C -0.11 -1.83 6.31 -25.07 -0.16 -1.98 16 8 C -0.12 -2.00 2.38 -90.65 -0.22 -2.22 16 9 H 0.11 1.93 5.51 -51.93 -0.29 1.65 16 10 C 0.55 11.13 5.41 -10.98 -0.06 11.07 16 11 O -0.56 -12.71 15.13 5.56 0.08 -12.63 16 12 N -0.58 -11.11 2.45 -176.40 -0.43 -11.54 16 13 C 0.13 2.34 5.76 -5.70 -0.03 2.31 16 14 C -0.17 -3.15 5.65 -28.92 -0.16 -3.31 16 15 C 0.16 3.33 5.63 -5.23 -0.03 3.30 16 16 N -0.59 -14.11 2.54 -172.00 -0.44 -14.55 16 17 C -0.25 -6.68 9.28 -15.06 -0.14 -6.82 16 18 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 19 C 0.00 0.07 4.88 -17.43 -0.09 -0.01 16 20 N -0.91 -25.18 10.96 55.49 0.61 -24.58 16 21 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.16 3.60 5.04 -1.75 -0.01 3.60 16 26 C 0.09 1.54 4.81 -4.58 -0.02 1.52 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.55 6.88 -51.93 -0.36 1.19 16 36 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 37 H 0.08 1.42 7.08 -51.93 -0.37 1.05 16 38 H 0.07 1.49 7.91 -51.93 -0.41 1.08 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.94 8.02 -51.93 -0.42 0.52 16 41 H 0.03 0.62 7.59 -51.93 -0.39 0.23 16 42 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.08 1.88 5.20 -51.93 -0.27 1.61 16 44 H 0.04 0.93 8.02 -51.93 -0.42 0.51 16 45 H 0.06 0.96 6.29 -51.93 -0.33 0.64 16 46 H 0.06 0.96 7.72 -51.93 -0.40 0.56 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -31.12 348.53 -8.31 -39.43 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.82 Total: 1.45 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -0.23 Total: 6.58 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.26 Total: -50.67 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.23 Total: -18.65 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.12 -8.31 -39.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981486012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.620 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds