Wall clock time and date at job start Tue Mar 31 2020 03:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00085 * 2 1 4 4 H 1.09000 * 110.01658 * 28.61055 * 3 2 1 5 5 C 1.54263 * 110.07567 * 267.19186 * 3 2 1 6 6 C 1.54885 * 104.19851 * 217.08250 * 5 3 2 7 7 C 1.54897 * 102.74811 * 37.94326 * 6 5 3 8 8 C 1.53874 * 110.03435 * 150.00002 * 3 2 1 9 9 H 1.09000 * 110.03362 * 238.62399 * 8 3 2 10 10 C 1.50704 * 110.03130 * 0.02562 * 8 3 2 11 11 O 1.21279 * 120.00279 * 87.03320 * 10 8 3 12 12 N 1.34781 * 119.99769 * 267.04071 * 10 8 3 13 13 C 1.48215 * 119.96830 * 185.18182 * 12 10 8 14 14 C 1.47602 * 110.04559 * 102.54518 * 13 12 10 15 15 C 1.53794 * 111.84031 * 58.43141 * 14 13 12 16 16 N 1.43466 * 107.96372 * 281.54437 * 15 14 13 17 17 C 1.36930 * 118.93923 * 273.63470 * 16 15 14 18 18 H 1.07994 * 120.00411 * 22.99816 * 17 16 15 19 19 C 1.38820 * 119.99782 * 202.99877 * 17 16 15 20 20 N 1.31619 * 119.99802 * 17.60729 * 19 17 16 21 21 Si 1.86796 * 119.99844 * 197.60561 * 19 17 16 22 22 H 1.48489 * 109.47244 * 60.00164 * 21 19 17 23 23 H 1.48505 * 109.46988 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47426 * 299.99690 * 21 19 17 25 25 C 1.48857 * 122.11720 * 93.60705 * 16 15 14 26 26 C 1.43620 * 119.97210 * 5.44694 * 12 10 8 27 27 H 1.09004 * 109.47431 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47104 * 299.99940 * 1 2 3 29 29 H 1.09003 * 109.47308 * 59.99843 * 1 2 3 30 30 H 1.09005 * 110.48327 * 335.75800 * 5 3 2 31 31 H 1.08996 * 110.48943 * 98.26992 * 5 3 2 32 32 H 1.08999 * 110.75910 * 156.25131 * 6 5 3 33 33 H 1.08998 * 110.76029 * 279.62891 * 6 5 3 34 34 H 1.09002 * 110.48414 * 203.38523 * 7 6 5 35 35 H 1.08990 * 110.49035 * 80.73666 * 7 6 5 36 36 H 1.09001 * 109.32432 * 222.77970 * 13 12 10 37 37 H 1.09006 * 109.32219 * 342.24223 * 13 12 10 38 38 H 1.09004 * 109.10150 * 297.76397 * 14 13 12 39 39 H 1.09001 * 108.84787 * 178.93529 * 14 13 12 40 40 H 1.09006 * 109.76347 * 161.92625 * 15 14 13 41 41 H 1.09001 * 109.76314 * 41.16314 * 15 14 13 42 42 H 0.96998 * 119.99952 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.48099 * 200.65731 * 25 16 15 44 44 H 1.09003 * 109.47837 * 80.63306 * 25 16 15 45 45 H 1.09006 * 108.86935 * 31.42946 * 26 12 10 46 46 H 1.09000 * 108.87375 * 149.86443 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 0.4904 5 6 2.2904 1.7603 -1.4472 6 6 3.6248 2.5405 -1.3485 7 6 4.4265 1.7166 -0.3103 8 6 3.3683 1.2778 0.7228 9 1 3.3578 1.9708 1.5641 10 6 3.6669 -0.1177 1.2073 11 8 4.2191 -0.9094 0.4730 12 7 3.3202 -0.4859 2.4566 13 6 3.7154 -1.8180 2.9724 14 6 4.8676 -1.6856 3.8853 15 6 4.5548 -0.7566 5.0704 16 7 4.6515 0.5981 4.6081 17 6 5.8735 1.2158 4.6178 18 1 6.7774 0.6250 4.6028 19 6 5.9505 2.6016 4.6469 20 7 4.9031 3.3113 5.0098 21 14 7.5405 3.4588 4.1712 22 1 7.8916 3.1094 2.7714 23 1 7.3636 4.9289 4.2855 24 1 8.6305 3.0199 5.0793 25 6 3.4663 1.3535 4.1178 26 6 2.5632 0.4106 3.2848 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.4009 0.8972 -2.1037 31 1 1.4917 2.4103 -1.8042 32 1 4.1371 2.5529 -2.3105 33 1 3.4535 3.5547 -0.9877 34 1 5.1876 2.3368 0.1631 35 1 4.8818 0.8466 -0.7832 36 1 2.8761 -2.2605 3.5090 37 1 3.9858 -2.4629 2.1362 38 1 5.7162 -1.2825 3.3326 39 1 5.1294 -2.6724 4.2673 40 1 5.2751 -0.9252 5.8710 41 1 3.5459 -0.9507 5.4346 42 1 4.9570 4.2796 5.0305 43 1 3.7971 2.1843 3.4947 44 1 2.9034 1.7385 4.9681 45 1 1.9142 1.0139 2.6499 46 1 1.9436 -0.1750 3.9639 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981486012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:09 Heat of formation + Delta-G solvation = -72.671094 kcal Electronic energy + Delta-G solvation = -26827.143730 eV Core-core repulsion = 23330.787646 eV Total energy + Delta-G solvation = -3496.356084 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58765 -39.57116 -38.36380 -36.73452 -35.85102 -34.33448 -32.73570 -30.34317 -29.24539 -29.09666 -27.18912 -26.84371 -25.42222 -24.04870 -21.80858 -21.66501 -21.38688 -19.69395 -18.91913 -18.09189 -17.52612 -17.27585 -17.03110 -16.30178 -16.11617 -15.76347 -15.57623 -15.22605 -15.07094 -14.88627 -14.62850 -14.31184 -13.95019 -13.84549 -13.42464 -13.36862 -13.11592 -12.82904 -12.54960 -12.50381 -12.40534 -12.30988 -12.26218 -12.06962 -12.02318 -11.83074 -11.69530 -11.63349 -11.51532 -11.43816 -10.62627 -10.50439 -10.43383 -9.42894 -8.65767 -7.84695 -5.23931 1.42247 1.45027 1.51197 1.80978 2.25056 2.51732 2.83582 3.27443 3.49978 3.58496 3.67555 3.76603 4.03957 4.20736 4.25459 4.27080 4.35479 4.39233 4.45662 4.49804 4.53976 4.58306 4.59842 4.63982 4.72267 4.73161 4.84360 4.89425 4.93494 4.95625 5.02610 5.07200 5.12803 5.15892 5.24124 5.31602 5.39479 5.49907 5.61609 5.72883 5.88586 6.30945 6.40332 6.66731 7.19539 7.39539 7.97218 8.34915 9.19928 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.006905 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.438908 B = 4053.808525 C = 4991.960735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.100 3.900 4 H 0.091 0.909 5 C -0.135 4.135 6 C -0.111 4.111 7 C -0.116 4.116 8 C -0.119 4.119 9 H 0.094 0.906 10 C 0.545 3.455 11 O -0.592 6.592 12 N -0.586 5.586 13 C 0.128 3.872 14 C -0.153 4.153 15 C 0.159 3.841 16 N -0.604 5.604 17 C -0.258 4.258 18 H 0.051 0.949 19 C -0.038 4.038 20 N -0.926 5.926 21 Si 0.945 3.055 22 H -0.289 1.289 23 H -0.288 1.288 24 H -0.281 1.281 25 C 0.171 3.829 26 C 0.098 3.902 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.057 0.943 42 H 0.250 0.750 43 H 0.047 0.953 44 H 0.022 0.978 45 H 0.080 0.920 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.455 -3.348 -8.924 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.042 3.958 4 H 0.109 0.891 5 C -0.173 4.173 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.141 4.141 9 H 0.112 0.888 10 C 0.334 3.666 11 O -0.473 6.473 12 N -0.315 5.315 13 C 0.006 3.994 14 C -0.194 4.194 15 C 0.032 3.968 16 N -0.326 5.326 17 C -0.388 4.388 18 H 0.069 0.931 19 C -0.234 4.234 20 N -0.572 5.572 21 Si 0.775 3.225 22 H -0.216 1.216 23 H -0.213 1.213 24 H -0.207 1.207 25 C 0.046 3.954 26 C -0.027 4.027 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.098 0.902 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.120 -3.781 -9.233 14.940 hybrid contribution 1.192 0.825 0.186 1.461 sum -9.927 -2.957 -9.047 13.753 Atomic orbital electron populations 1.22949 0.79559 1.03425 1.01045 1.88032 1.21430 1.27644 1.95080 1.22775 0.91746 0.85121 0.96154 0.89128 1.22833 0.98477 1.00406 0.95573 1.22408 0.95014 0.98658 0.98763 1.22314 0.96870 1.00035 0.96141 1.22234 0.97608 0.94326 0.99901 0.88795 1.20322 0.76089 0.89183 0.80973 1.90526 1.45632 1.54738 1.56408 1.47346 1.54414 1.16895 1.12893 1.20696 0.97891 0.83621 0.97158 1.21772 0.98016 1.00754 0.98839 1.20426 0.99127 0.83911 0.93322 1.43855 1.05193 1.10546 1.73014 1.19282 0.85875 0.89728 1.43958 0.93111 1.25383 0.99384 0.97366 1.01243 1.70137 1.30668 1.05137 1.51305 0.85681 0.81105 0.77636 0.78119 1.21599 1.21324 1.20726 1.21766 0.86521 0.92391 0.94769 1.21920 0.93544 0.93139 0.94125 0.89359 0.92991 0.92554 0.91501 0.88388 0.89742 0.89753 0.92539 0.92000 0.89007 0.91500 0.95600 0.89737 0.94485 0.92439 0.94069 0.93419 0.95954 0.90187 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 113.37 1.23 1.73 16 2 O -0.40 -11.55 8.82 -148.98 -1.31 -12.87 16 3 C 0.10 2.66 2.80 31.32 0.09 2.75 16 4 H 0.09 1.98 7.80 -2.39 -0.02 1.96 16 5 C -0.14 -3.04 6.56 31.67 0.21 -2.83 16 6 C -0.11 -2.64 6.91 31.89 0.22 -2.42 16 7 C -0.12 -3.87 6.31 31.67 0.20 -3.67 16 8 C -0.12 -4.11 2.38 -10.81 -0.03 -4.14 16 9 H 0.09 3.44 5.51 -2.39 -0.01 3.43 16 10 C 0.54 22.04 5.41 87.66 0.47 22.51 16 11 O -0.59 -27.68 15.13 -3.03 -0.05 -27.73 16 12 N -0.59 -21.78 2.45 -830.40 -2.03 -23.81 16 13 C 0.13 4.36 5.76 84.36 0.49 4.85 16 14 C -0.15 -5.58 5.65 29.17 0.16 -5.42 16 15 C 0.16 6.36 5.63 87.21 0.49 6.85 16 16 N -0.60 -29.05 2.54 -698.08 -1.78 -30.82 16 17 C -0.26 -14.14 9.28 84.04 0.78 -13.36 16 18 H 0.05 2.86 7.89 -2.91 -0.02 2.83 16 19 C -0.04 -2.09 4.88 84.86 0.41 -1.68 16 20 N -0.93 -52.03 10.96 21.65 0.24 -51.79 16 21 Si 0.95 45.28 29.59 68.60 2.03 47.31 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 25 C 0.17 7.58 5.04 86.56 0.44 8.01 16 26 C 0.10 3.36 4.81 87.55 0.42 3.78 16 27 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.67 8.08 -2.38 -0.02 1.65 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 2.34 6.88 -2.39 -0.02 2.33 16 36 H 0.09 2.52 8.05 -2.39 -0.02 2.50 16 37 H 0.07 2.44 7.08 -2.38 -0.02 2.42 16 38 H 0.03 1.15 7.91 -2.39 -0.02 1.13 16 39 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.04 1.52 8.02 -2.38 -0.02 1.50 16 41 H 0.06 2.02 7.59 -2.39 -0.02 2.00 16 42 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 43 H 0.05 2.38 5.20 -2.39 -0.01 2.37 16 44 H 0.02 1.06 8.02 -2.39 -0.02 1.04 16 45 H 0.08 2.43 6.29 -2.38 -0.01 2.42 16 46 H 0.08 2.47 7.72 -2.39 -0.02 2.46 16 Total: -1.00 -69.21 348.53 3.64 -65.57 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.95 Total: 17.16 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 5.59 Total: 16.98 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -3.57 Total: -106.43 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.36 Total: -40.60 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.21 3.64 -65.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981486012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.096 kcal (2) G-P(sol) polarization free energy of solvation -69.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds