Wall clock time and date at job start Tue Mar 31 2020 03:49:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42893 * 114.00401 * 2 1
4 4 H 1.09003 * 109.47325 * 30.00147 * 3 2 1
5 5 C 1.50704 * 109.47343 * 270.00143 * 3 2 1
6 6 O 1.21283 * 119.99746 * 325.70381 * 5 3 2
7 7 N 1.34773 * 120.00225 * 145.70356 * 5 3 2
8 8 C 1.48211 * 119.96755 * 183.89189 * 7 5 3
9 9 C 1.47717 * 110.06839 * 102.59403 * 8 7 5
10 10 C 1.53799 * 111.83566 * 58.36512 * 9 8 7
11 11 N 1.43459 * 107.95634 * 281.59823 * 10 9 8
12 12 C 1.36939 * 118.94079 * 273.62969 * 11 10 9
13 13 H 1.07998 * 120.00159 * 28.88129 * 12 11 10
14 14 C 1.38811 * 119.99755 * 208.88130 * 12 11 10
15 15 N 1.31621 * 120.00516 * 10.33668 * 14 12 11
16 16 Si 1.86803 * 119.99964 * 190.33414 * 14 12 11
17 17 H 1.48494 * 109.47067 * 89.99774 * 16 14 12
18 18 H 1.48496 * 109.47263 * 210.00563 * 16 14 12
19 19 H 1.48510 * 109.46783 * 330.00074 * 16 14 12
20 20 C 1.48862 * 122.11830 * 93.65819 * 11 10 9
21 21 C 1.43616 * 119.97068 * 4.16638 * 7 5 3
22 22 C 1.52997 * 109.47115 * 150.00109 * 3 2 1
23 23 C 1.53781 * 113.61449 * 208.81481 * 22 3 2
24 24 C 1.54055 * 86.98504 * 140.02111 * 23 22 3
25 25 C 1.53779 * 113.61727 * 306.42598 * 22 3 2
26 26 H 1.09008 * 109.46848 * 300.00297 * 1 2 3
27 27 H 1.08998 * 109.47339 * 59.99536 * 1 2 3
28 28 H 1.09003 * 109.47436 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.32287 * 222.78074 * 8 7 5
30 30 H 1.08996 * 109.33073 * 342.24168 * 8 7 5
31 31 H 1.08996 * 109.06538 * 297.72461 * 9 8 7
32 32 H 1.09004 * 108.89395 * 178.89391 * 9 8 7
33 33 H 1.09000 * 109.76407 * 161.98161 * 10 9 8
34 34 H 1.08998 * 109.80706 * 41.24203 * 10 9 8
35 35 H 0.96996 * 120.00198 * 179.97438 * 15 14 12
36 36 H 1.09001 * 109.47758 * 200.61076 * 20 11 10
37 37 H 1.09001 * 109.48789 * 80.58526 * 20 11 10
38 38 H 1.09003 * 108.87406 * 31.41631 * 21 7 5
39 39 H 1.08993 * 108.88042 * 149.96113 * 21 7 5
40 40 H 1.09005 * 112.85061 * 77.62527 * 22 3 2
41 41 H 1.08995 * 113.61787 * 254.61371 * 23 22 3
42 42 H 1.09005 * 113.61469 * 25.51881 * 23 22 3
43 43 H 1.09000 * 113.62028 * 220.02407 * 24 23 22
44 44 H 1.08995 * 113.68751 * 89.13247 * 24 23 22
45 45 H 1.09003 * 113.60821 * 334.48129 * 25 22 3
46 46 H 1.08993 * 113.61546 * 105.29926 * 25 22 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3451 1.9994 0.5139
5 6 2.2146 1.7643 -1.4208
6 8 2.5047 0.9609 -2.2818
7 7 2.0750 3.0675 -1.7347
8 6 2.1909 3.5057 -3.1458
9 6 0.8493 3.7590 -3.7097
10 6 0.0843 4.8260 -2.9087
11 7 -0.4320 4.2037 -1.7237
12 6 -1.6442 3.5693 -1.7828
13 1 -1.9790 3.1299 -2.7107
14 6 -2.4424 3.4911 -0.6499
15 7 -2.1370 4.1939 0.4203
16 14 -3.9504 2.3886 -0.6441
17 1 -3.5715 1.0342 -0.1674
18 1 -4.9793 2.9619 0.2602
19 1 -4.4991 2.2933 -2.0208
20 6 0.3072 4.2259 -0.4318
21 6 1.8200 4.0312 -0.7009
22 6 3.3589 1.2630 0.7212
23 6 3.7397 2.5924 1.3940
24 6 4.2735 1.7512 2.5690
25 6 3.2839 0.6578 2.1329
26 1 -0.3633 0.5139 0.8900
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0277 0.0005
29 1 2.7818 4.4205 -3.1921
30 1 2.6889 2.7283 -3.7253
31 1 0.2781 2.8308 -3.7004
32 1 0.9578 4.0984 -4.7399
33 1 -0.7380 5.2174 -3.5077
34 1 0.7593 5.6369 -2.6351
35 1 -2.6951 4.1395 1.2118
36 1 -0.0548 3.4211 0.2080
37 1 0.1463 5.1838 0.0628
38 1 2.3015 3.6978 0.2185
39 1 2.2500 4.9880 -0.9967
40 1 4.1544 0.8411 0.1069
41 1 4.5150 3.1444 0.8627
42 1 2.8812 3.2115 1.6548
43 1 4.0507 2.1767 3.5475
44 1 5.3189 1.4622 2.4612
45 1 2.3010 0.7489 2.5953
46 1 3.6901 -0.3516 2.1973
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000981702101.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:49:16
Heat of formation + Delta-G solvation = -24.126900 kcal
Electronic energy + Delta-G solvation = -26968.806675 eV
Core-core repulsion = 23474.555626 eV
Total energy + Delta-G solvation = -3494.251050 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-40.35805 -38.43655 -37.14733 -36.38337 -34.20374 -32.78839 -30.94487 -29.32457
-27.55136 -26.11855 -25.41975 -25.40198 -23.71316 -23.63825 -21.41650 -19.83580
-19.49033 -18.65672 -17.24876 -16.58220 -16.18854 -15.77534 -15.61327 -15.14035
-14.79961 -14.36458 -14.12389 -13.72900 -13.55075 -13.31114 -13.16169 -12.82605
-12.58349 -12.32694 -12.26598 -12.06054 -11.66139 -11.62058 -11.37786 -11.06244
-10.88299 -10.82721 -10.60350 -10.47354 -10.39073 -10.30347 -10.22625 -10.13545
-10.03814 -9.86144 -9.71451 -8.70431 -8.55018 -7.99280 -6.69595 -5.85467
-3.31504 3.05959 3.30167 3.38589 3.40203 3.48810 3.99432 4.43163
4.61765 4.73158 4.83215 4.91934 5.16979 5.26438 5.32867 5.37869
5.49505 5.57123 5.66973 5.72682 5.77271 5.78614 5.81185 5.90085
5.91819 5.92690 5.97994 6.05578 6.10231 6.12555 6.22559 6.24214
6.30651 6.44222 6.51575 6.53693 6.81098 6.91382 7.02849 7.29576
7.40008 7.43585 7.74995 8.01687 8.40601 8.73061 9.15824 9.81883
10.29392 11.22063
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.013691 B = 0.007199 C = 0.006038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2044.612413 B = 3888.417312 C = 4635.860514
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.361 6.361
3 C 0.084 3.916
4 H 0.089 0.911
5 C 0.501 3.499
6 O -0.545 6.545
7 N -0.581 5.581
8 C 0.127 3.873
9 C -0.168 4.168
10 C 0.163 3.837
11 N -0.589 5.589
12 C -0.251 4.251
13 H 0.062 0.938
14 C 0.007 3.993
15 N -0.908 5.908
16 Si 0.895 3.105
17 H -0.286 1.286
18 H -0.290 1.290
19 H -0.279 1.279
20 C 0.165 3.835
21 C 0.063 3.937
22 C -0.103 4.103
23 C -0.139 4.139
24 C -0.141 4.141
25 C -0.121 4.121
26 H 0.045 0.955
27 H 0.052 0.948
28 H 0.082 0.918
29 H 0.060 0.940
30 H 0.076 0.924
31 H 0.066 0.934
32 H 0.054 0.946
33 H 0.046 0.954
34 H 0.033 0.967
35 H 0.253 0.747
36 H 0.071 0.929
37 H 0.043 0.957
38 H 0.076 0.924
39 H 0.062 0.938
40 H 0.096 0.904
41 H 0.071 0.929
42 H 0.093 0.907
43 H 0.069 0.931
44 H 0.079 0.921
45 H 0.083 0.917
46 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.768 -0.951 2.839 11.176
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.278 6.278
3 C 0.023 3.977
4 H 0.107 0.893
5 C 0.288 3.712
6 O -0.423 6.423
7 N -0.314 5.314
8 C 0.006 3.994
9 C -0.209 4.209
10 C 0.035 3.965
11 N -0.311 5.311
12 C -0.381 4.381
13 H 0.080 0.920
14 C -0.191 4.191
15 N -0.553 5.553
16 Si 0.725 3.275
17 H -0.213 1.213
18 H -0.216 1.216
19 H -0.204 1.204
20 C 0.039 3.961
21 C -0.063 4.063
22 C -0.121 4.121
23 C -0.176 4.176
24 C -0.179 4.179
25 C -0.159 4.159
26 H 0.063 0.937
27 H 0.071 0.929
28 H 0.101 0.899
29 H 0.078 0.922
30 H 0.094 0.906
31 H 0.085 0.915
32 H 0.073 0.927
33 H 0.064 0.936
34 H 0.052 0.948
35 H 0.064 0.936
36 H 0.089 0.911
37 H 0.061 0.939
38 H 0.094 0.906
39 H 0.080 0.920
40 H 0.115 0.885
41 H 0.090 0.910
42 H 0.111 0.889
43 H 0.088 0.912
44 H 0.097 0.903
45 H 0.102 0.898
46 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 10.936 -1.513 2.548 11.330
hybrid contribution -1.287 -0.267 -0.072 1.316
sum 9.649 -1.780 2.476 10.120
Atomic orbital electron populations
1.22879 0.80142 1.02333 1.01428 1.87890 1.20186 1.25178 1.94591
1.22161 0.96122 0.86804 0.92659 0.89339 1.21205 0.76558 0.82040
0.91354 1.90607 1.48023 1.53041 1.50613 1.47412 1.69416 1.06734
1.07863 1.20667 0.97734 0.99203 0.81842 1.21977 0.97065 1.03074
0.98827 1.20288 0.95494 0.91985 0.88769 1.43585 1.19432 1.62627
1.05456 1.19166 0.93789 1.28360 0.96807 0.91994 1.25048 0.97610
0.98942 0.97524 1.69968 1.39778 1.41556 1.04017 0.86395 0.83031
0.80441 0.77611 1.21324 1.21625 1.20434 1.21928 0.85015 1.01091
0.88092 1.22542 1.00935 0.91976 0.90801 1.22575 0.95411 0.98250
0.95908 1.23183 1.01444 0.95783 0.97197 1.22870 0.99182 0.97523
0.98305 1.22752 0.99905 0.98435 0.94804 0.93664 0.92887 0.89911
0.92181 0.90562 0.91526 0.92727 0.93579 0.94840 0.93645 0.91054
0.93903 0.90625 0.91966 0.88538 0.91032 0.88872 0.91199 0.90283
0.89818 0.91258
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.52 10.81 101.05 1.09 1.62 16
2 O -0.36 -6.87 9.74 -52.29 -0.51 -7.37 16
3 C 0.08 1.48 1.83 -27.88 -0.05 1.43 16
4 H 0.09 1.60 4.75 -51.93 -0.25 1.35 16
5 C 0.50 9.98 6.76 -10.99 -0.07 9.91 16
6 O -0.55 -12.59 16.23 -11.51 -0.19 -12.78 16
7 N -0.58 -10.62 2.45 -176.35 -0.43 -11.05 16
8 C 0.13 2.17 5.76 -5.65 -0.03 2.14 16
9 C -0.17 -3.06 5.66 -28.87 -0.16 -3.22 16
10 C 0.16 3.25 5.63 -5.24 -0.03 3.22 16
11 N -0.59 -13.70 2.53 -171.99 -0.43 -14.13 16
12 C -0.25 -6.56 9.25 -15.06 -0.14 -6.70 16
13 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16
14 C 0.01 0.18 5.03 -17.43 -0.09 0.10 16
15 N -0.91 -24.49 10.91 55.49 0.61 -23.88 16
16 Si 0.90 21.10 29.57 -169.99 -5.03 16.07 16
17 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16
18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
20 C 0.16 3.52 5.01 -1.74 -0.01 3.51 16
21 C 0.06 1.07 4.81 -4.58 -0.02 1.04 16
22 C -0.10 -1.46 3.39 -89.81 -0.30 -1.76 16
23 C -0.14 -1.62 6.19 -25.77 -0.16 -1.78 16
24 C -0.14 -1.44 8.09 -25.77 -0.21 -1.65 16
25 C -0.12 -1.48 7.29 -25.92 -0.19 -1.67 16
26 H 0.04 0.80 8.09 -51.92 -0.42 0.38 16
27 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16
28 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16
29 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16
30 H 0.08 1.36 7.09 -51.93 -0.37 0.99 16
31 H 0.07 1.44 7.91 -51.93 -0.41 1.03 16
32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
33 H 0.05 0.94 8.02 -51.93 -0.42 0.53 16
34 H 0.03 0.61 7.59 -51.93 -0.39 0.22 16
35 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16
36 H 0.07 1.70 5.53 -51.93 -0.29 1.41 16
37 H 0.04 0.98 7.95 -51.93 -0.41 0.57 16
38 H 0.08 1.13 2.84 -51.93 -0.15 0.98 16
39 H 0.06 0.96 7.72 -51.93 -0.40 0.56 16
40 H 0.10 1.44 8.11 -51.93 -0.42 1.02 16
41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
42 H 0.09 1.10 6.19 -51.93 -0.32 0.78 16
43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16
45 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16
46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
LS Contribution 349.33 15.07 5.26 5.26
Total: -1.00 -30.18 349.33 -8.69 -38.87
By element:
Atomic # 1 Polarization: 10.44 SS G_CDS: -7.59 Total: 2.85 kcal
Atomic # 6 Polarization: 6.55 SS G_CDS: -0.38 Total: 6.17 kcal
Atomic # 7 Polarization: -48.81 SS G_CDS: -0.26 Total: -49.07 kcal
Atomic # 8 Polarization: -19.45 SS G_CDS: -0.70 Total: -20.15 kcal
Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -30.18 -8.69 -38.87 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981702101.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.739 kcal
(2) G-P(sol) polarization free energy of solvation -30.178 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.439 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.127 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds