Wall clock time and date at job start Tue Mar 31 2020 03:49:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42893 * 114.00401 * 2 1
4 4 H 1.09003 * 109.47325 * 30.00147 * 3 2 1
5 5 C 1.50704 * 109.47343 * 270.00143 * 3 2 1
6 6 O 1.21283 * 119.99746 * 325.70381 * 5 3 2
7 7 N 1.34773 * 120.00225 * 145.70356 * 5 3 2
8 8 C 1.48211 * 119.96755 * 183.89189 * 7 5 3
9 9 C 1.47717 * 110.06839 * 102.59403 * 8 7 5
10 10 C 1.53799 * 111.83566 * 58.36512 * 9 8 7
11 11 N 1.43459 * 107.95634 * 281.59823 * 10 9 8
12 12 C 1.36939 * 118.94079 * 273.62969 * 11 10 9
13 13 H 1.07998 * 120.00159 * 28.88129 * 12 11 10
14 14 C 1.38811 * 119.99755 * 208.88130 * 12 11 10
15 15 N 1.31621 * 120.00516 * 10.33668 * 14 12 11
16 16 Si 1.86803 * 119.99964 * 190.33414 * 14 12 11
17 17 H 1.48494 * 109.47067 * 89.99774 * 16 14 12
18 18 H 1.48496 * 109.47263 * 210.00563 * 16 14 12
19 19 H 1.48510 * 109.46783 * 330.00074 * 16 14 12
20 20 C 1.48862 * 122.11830 * 93.65819 * 11 10 9
21 21 C 1.43616 * 119.97068 * 4.16638 * 7 5 3
22 22 C 1.52997 * 109.47115 * 150.00109 * 3 2 1
23 23 C 1.53781 * 113.61449 * 208.81481 * 22 3 2
24 24 C 1.54055 * 86.98504 * 140.02111 * 23 22 3
25 25 C 1.53779 * 113.61727 * 306.42598 * 22 3 2
26 26 H 1.09008 * 109.46848 * 300.00297 * 1 2 3
27 27 H 1.08998 * 109.47339 * 59.99536 * 1 2 3
28 28 H 1.09003 * 109.47436 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.32287 * 222.78074 * 8 7 5
30 30 H 1.08996 * 109.33073 * 342.24168 * 8 7 5
31 31 H 1.08996 * 109.06538 * 297.72461 * 9 8 7
32 32 H 1.09004 * 108.89395 * 178.89391 * 9 8 7
33 33 H 1.09000 * 109.76407 * 161.98161 * 10 9 8
34 34 H 1.08998 * 109.80706 * 41.24203 * 10 9 8
35 35 H 0.96996 * 120.00198 * 179.97438 * 15 14 12
36 36 H 1.09001 * 109.47758 * 200.61076 * 20 11 10
37 37 H 1.09001 * 109.48789 * 80.58526 * 20 11 10
38 38 H 1.09003 * 108.87406 * 31.41631 * 21 7 5
39 39 H 1.08993 * 108.88042 * 149.96113 * 21 7 5
40 40 H 1.09005 * 112.85061 * 77.62527 * 22 3 2
41 41 H 1.08995 * 113.61787 * 254.61371 * 23 22 3
42 42 H 1.09005 * 113.61469 * 25.51881 * 23 22 3
43 43 H 1.09000 * 113.62028 * 220.02407 * 24 23 22
44 44 H 1.08995 * 113.68751 * 89.13247 * 24 23 22
45 45 H 1.09003 * 113.60821 * 334.48129 * 25 22 3
46 46 H 1.08993 * 113.61546 * 105.29926 * 25 22 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3451 1.9994 0.5139
5 6 2.2146 1.7643 -1.4208
6 8 2.5047 0.9609 -2.2818
7 7 2.0750 3.0675 -1.7347
8 6 2.1909 3.5057 -3.1458
9 6 0.8493 3.7590 -3.7097
10 6 0.0843 4.8260 -2.9087
11 7 -0.4320 4.2037 -1.7237
12 6 -1.6442 3.5693 -1.7828
13 1 -1.9790 3.1299 -2.7107
14 6 -2.4424 3.4911 -0.6499
15 7 -2.1370 4.1939 0.4203
16 14 -3.9504 2.3886 -0.6441
17 1 -3.5715 1.0342 -0.1674
18 1 -4.9793 2.9619 0.2602
19 1 -4.4991 2.2933 -2.0208
20 6 0.3072 4.2259 -0.4318
21 6 1.8200 4.0312 -0.7009
22 6 3.3589 1.2630 0.7212
23 6 3.7397 2.5924 1.3940
24 6 4.2735 1.7512 2.5690
25 6 3.2839 0.6578 2.1329
26 1 -0.3633 0.5139 0.8900
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0277 0.0005
29 1 2.7818 4.4205 -3.1921
30 1 2.6889 2.7283 -3.7253
31 1 0.2781 2.8308 -3.7004
32 1 0.9578 4.0984 -4.7399
33 1 -0.7380 5.2174 -3.5077
34 1 0.7593 5.6369 -2.6351
35 1 -2.6951 4.1395 1.2118
36 1 -0.0548 3.4211 0.2080
37 1 0.1463 5.1838 0.0628
38 1 2.3015 3.6978 0.2185
39 1 2.2500 4.9880 -0.9967
40 1 4.1544 0.8411 0.1069
41 1 4.5150 3.1444 0.8627
42 1 2.8812 3.2115 1.6548
43 1 4.0507 2.1767 3.5475
44 1 5.3189 1.4622 2.4612
45 1 2.3010 0.7489 2.5953
46 1 3.6901 -0.3516 2.1973
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981702101.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:49:15
Heat of formation + Delta-G solvation = -41.033224 kcal
Electronic energy + Delta-G solvation = -26969.539789 eV
Core-core repulsion = 23474.555626 eV
Total energy + Delta-G solvation = -3494.984163 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.77374 -39.69451 -38.64015 -37.91311 -35.93241 -34.38580 -32.78379 -30.67986
-29.22047 -27.55048 -26.97553 -26.50177 -25.40586 -24.94856 -22.84488 -21.52013
-20.55213 -20.14813 -18.89082 -18.18919 -17.79056 -17.20682 -16.97459 -16.61005
-16.15461 -15.99821 -15.77337 -15.43444 -15.00407 -14.82901 -14.57581 -14.32734
-13.91637 -13.87168 -13.69238 -13.22415 -13.15397 -12.98768 -12.89297 -12.76086
-12.53254 -12.38792 -12.29326 -12.09215 -11.77532 -11.72793 -11.61848 -11.48219
-11.43949 -11.31793 -11.15546 -10.54437 -10.20686 -9.53829 -8.59633 -7.85954
-5.33257 1.39170 1.43042 1.49124 1.50711 2.07168 2.48211 2.64553
3.27007 3.45129 3.64859 3.71610 3.78194 3.86064 4.00154 4.05947
4.13589 4.21742 4.28600 4.30547 4.35919 4.47186 4.52475 4.57864
4.66395 4.69195 4.78106 4.82869 4.88430 4.90591 4.94811 5.03298
5.09486 5.16223 5.22683 5.26494 5.28562 5.45642 5.57471 5.60141
5.68950 5.77170 5.92804 6.41137 6.51247 7.18168 7.20356 7.94683
8.34134 9.17664
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.013691 B = 0.007199 C = 0.006038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2044.612413 B = 3888.417312 C = 4635.860514
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.371 6.371
3 C 0.085 3.915
4 H 0.082 0.918
5 C 0.494 3.506
6 O -0.584 6.584
7 N -0.580 5.580
8 C 0.123 3.877
9 C -0.154 4.154
10 C 0.159 3.841
11 N -0.604 5.604
12 C -0.258 4.258
13 H 0.046 0.954
14 C -0.031 4.031
15 N -0.924 5.924
16 Si 0.941 3.059
17 H -0.283 1.283
18 H -0.290 1.290
19 H -0.280 1.280
20 C 0.173 3.827
21 C 0.072 3.928
22 C -0.110 4.110
23 C -0.135 4.135
24 C -0.125 4.125
25 C -0.123 4.123
26 H 0.047 0.953
27 H 0.017 0.983
28 H 0.107 0.893
29 H 0.100 0.900
30 H 0.068 0.932
31 H 0.022 0.978
32 H 0.085 0.915
33 H 0.036 0.964
34 H 0.060 0.940
35 H 0.250 0.750
36 H 0.041 0.959
37 H 0.027 0.973
38 H 0.099 0.901
39 H 0.092 0.908
40 H 0.089 0.911
41 H 0.085 0.915
42 H 0.091 0.909
43 H 0.085 0.915
44 H 0.094 0.906
45 H 0.077 0.923
46 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.567 -0.147 3.486 13.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 O -0.289 6.289
3 C 0.024 3.976
4 H 0.100 0.900
5 C 0.282 3.718
6 O -0.465 6.465
7 N -0.311 5.311
8 C 0.002 3.998
9 C -0.195 4.195
10 C 0.032 3.968
11 N -0.326 5.326
12 C -0.389 4.389
13 H 0.063 0.937
14 C -0.228 4.228
15 N -0.570 5.570
16 Si 0.770 3.230
17 H -0.209 1.209
18 H -0.216 1.216
19 H -0.206 1.206
20 C 0.047 3.953
21 C -0.053 4.053
22 C -0.129 4.129
23 C -0.172 4.172
24 C -0.162 4.162
25 C -0.160 4.160
26 H 0.066 0.934
27 H 0.035 0.965
28 H 0.125 0.875
29 H 0.118 0.882
30 H 0.087 0.913
31 H 0.041 0.959
32 H 0.104 0.896
33 H 0.054 0.946
34 H 0.078 0.922
35 H 0.060 0.940
36 H 0.060 0.940
37 H 0.045 0.955
38 H 0.117 0.883
39 H 0.110 0.890
40 H 0.107 0.893
41 H 0.104 0.896
42 H 0.109 0.891
43 H 0.103 0.897
44 H 0.113 0.887
45 H 0.095 0.905
46 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 12.749 -0.682 3.186 13.159
hybrid contribution -1.872 -0.502 -0.351 1.969
sum 10.877 -1.184 2.834 11.303
Atomic orbital electron populations
1.22833 0.80171 1.03429 0.99693 1.87878 1.20217 1.26310 1.94472
1.22335 0.97769 0.85935 0.91609 0.90022 1.21683 0.75849 0.82299
0.91925 1.90577 1.50036 1.54095 1.51804 1.47540 1.68304 1.06519
1.08757 1.20827 0.97339 1.00668 0.80987 1.21792 0.96782 1.00323
1.00570 1.20432 0.95778 0.92929 0.87656 1.43807 1.19053 1.62837
1.06916 1.19227 0.95096 1.28312 0.96252 0.93655 1.25515 0.99638
1.00166 0.97458 1.70074 1.40355 1.42488 1.04113 0.85677 0.80712
0.79336 0.77273 1.20947 1.21641 1.20562 1.21738 0.87639 0.99029
0.86878 1.22464 0.97826 0.93180 0.91799 1.22706 0.93022 1.00844
0.96363 1.23193 1.01761 0.94731 0.97519 1.22824 0.99352 0.95665
0.98360 1.22779 1.00444 0.99446 0.93377 0.93413 0.96452 0.87494
0.88171 0.91315 0.95885 0.89620 0.94583 0.92210 0.94031 0.94033
0.95526 0.88305 0.88993 0.89273 0.89646 0.89070 0.89678 0.88709
0.90476 0.90926
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.32 10.81 113.37 1.23 2.55 16
2 O -0.37 -14.29 9.74 -132.67 -1.29 -15.58 16
3 C 0.08 2.98 1.83 29.85 0.05 3.03 16
4 H 0.08 2.97 4.75 -2.39 -0.01 2.96 16
5 C 0.49 19.67 6.76 87.66 0.59 20.26 16
6 O -0.58 -27.39 16.23 13.28 0.22 -27.17 16
7 N -0.58 -20.46 2.45 -830.24 -2.03 -22.49 16
8 C 0.12 3.95 5.76 84.40 0.49 4.43 16
9 C -0.15 -5.42 5.66 29.21 0.17 -5.26 16
10 C 0.16 6.16 5.63 87.21 0.49 6.65 16
11 N -0.60 -28.17 2.53 -698.06 -1.76 -29.93 16
12 C -0.26 -13.80 9.25 84.03 0.78 -13.02 16
13 H 0.05 2.53 7.85 -2.91 -0.02 2.51 16
14 C -0.03 -1.69 5.03 84.86 0.43 -1.26 16
15 N -0.92 -50.56 10.91 21.65 0.24 -50.32 16
16 Si 0.94 44.05 29.57 68.60 2.03 46.08 16
17 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16
18 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16
19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16
20 C 0.17 7.35 5.01 86.56 0.43 7.79 16
21 C 0.07 2.30 4.81 87.55 0.42 2.72 16
22 C -0.11 -2.99 3.39 -10.27 -0.03 -3.03 16
23 C -0.14 -2.78 6.19 31.21 0.19 -2.59 16
24 C -0.12 -2.15 8.09 31.21 0.25 -1.90 16
25 C -0.12 -2.79 7.29 31.12 0.23 -2.56 16
26 H 0.05 1.74 8.09 -2.38 -0.02 1.72 16
27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16
28 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16
29 H 0.10 2.47 8.05 -2.38 -0.02 2.45 16
30 H 0.07 2.36 7.09 -2.39 -0.02 2.34 16
31 H 0.02 1.00 7.91 -2.39 -0.02 0.98 16
32 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16
33 H 0.04 1.45 8.02 -2.39 -0.02 1.43 16
34 H 0.06 2.00 7.59 -2.39 -0.02 1.99 16
35 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16
36 H 0.04 2.01 5.53 -2.39 -0.01 1.99 16
37 H 0.03 1.22 7.95 -2.39 -0.02 1.20 16
38 H 0.10 2.74 2.84 -2.39 -0.01 2.73 16
39 H 0.09 2.46 7.72 -2.39 -0.02 2.45 16
40 H 0.09 2.56 8.11 -2.38 -0.02 2.54 16
41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
42 H 0.09 1.93 6.19 -2.38 -0.01 1.91 16
43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
44 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
45 H 0.08 1.85 8.10 -2.39 -0.02 1.83 16
46 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
Total: -1.00 -67.17 349.33 4.06 -63.11
By element:
Atomic # 1 Polarization: 17.54 SS G_CDS: 0.96 Total: 18.50 kcal
Atomic # 6 Polarization: 12.11 SS G_CDS: 5.71 Total: 17.82 kcal
Atomic # 7 Polarization: -99.18 SS G_CDS: -3.56 Total: -102.74 kcal
Atomic # 8 Polarization: -41.68 SS G_CDS: -1.08 Total: -42.76 kcal
Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal
Total: -67.17 4.06 -63.11 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981702101.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.077 kcal
(2) G-P(sol) polarization free energy of solvation -67.171 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.093 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.110 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.033 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds