Wall clock time and date at job start Tue Mar 31 2020 03:46:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42899 * 113.99939 * 2 1
4 4 H 1.08994 * 110.05372 * 28.59005 * 3 2 1
5 5 C 1.54265 * 110.03341 * 267.16912 * 3 2 1
6 6 C 1.54889 * 104.19437 * 264.32334 * 5 3 2
7 7 C 1.54968 * 102.78188 * 322.08686 * 6 5 3
8 8 C 1.53875 * 110.03055 * 150.00202 * 3 2 1
9 9 H 1.09000 * 110.03400 * 359.94951 * 8 3 2
10 10 C 1.50705 * 110.03216 * 238.57154 * 8 3 2
11 11 O 1.21274 * 120.00052 * 338.18989 * 10 8 3
12 12 N 1.34780 * 119.99731 * 158.19265 * 10 8 3
13 13 C 1.46924 * 120.63190 * 354.79372 * 12 10 8
14 14 C 1.53191 * 108.77231 * 233.58585 * 13 12 10
15 15 C 1.53032 * 109.31640 * 305.36429 * 14 13 12
16 16 N 1.46506 * 109.46317 * 181.38801 * 15 14 13
17 17 C 1.36932 * 120.00143 * 154.97829 * 16 15 14
18 18 H 1.08005 * 120.00032 * 359.97438 * 17 16 15
19 19 C 1.38808 * 120.00124 * 180.02562 * 17 16 15
20 20 N 1.31620 * 119.99986 * 359.97438 * 19 17 16
21 21 Si 1.86801 * 120.00052 * 179.97438 * 19 17 16
22 22 H 1.48495 * 109.47268 * 59.99776 * 21 19 17
23 23 H 1.48504 * 109.47040 * 179.97438 * 21 19 17
24 24 H 1.48504 * 109.47370 * 299.99529 * 21 19 17
25 25 C 1.53045 * 109.52619 * 61.37517 * 15 14 13
26 26 C 1.46929 * 120.62748 * 174.77288 * 12 10 8
27 27 H 1.09000 * 109.46993 * 59.99825 * 1 2 3
28 28 H 1.09002 * 109.46850 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.46623 * 299.99272 * 1 2 3
30 30 H 1.08993 * 110.48892 * 23.00533 * 5 3 2
31 31 H 1.08995 * 110.48205 * 145.64936 * 5 3 2
32 32 H 1.09007 * 110.75239 * 80.37460 * 6 5 3
33 33 H 1.09001 * 110.75652 * 203.55738 * 6 5 3
34 34 H 1.08996 * 110.47406 * 279.23545 * 7 6 5
35 35 H 1.08993 * 110.52947 * 156.56834 * 7 6 5
36 36 H 1.08997 * 109.58499 * 113.80293 * 13 12 10
37 37 H 1.08998 * 109.58844 * 353.37582 * 13 12 10
38 38 H 1.09001 * 109.49790 * 185.41146 * 14 13 12
39 39 H 1.09002 * 109.49834 * 65.31955 * 14 13 12
40 40 H 1.09000 * 109.46456 * 301.36300 * 15 14 13
41 41 H 0.96995 * 119.99662 * 334.69610 * 16 15 14
42 42 H 0.97000 * 119.99915 * 180.02562 * 20 19 17
43 43 H 1.08993 * 109.49834 * 58.58150 * 25 15 14
44 44 H 1.08998 * 109.49770 * 178.67900 * 25 15 14
45 45 H 1.09004 * 109.58379 * 246.20185 * 26 12 10
46 46 H 1.08999 * 109.58566 * 6.47930 * 26 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 1 1.3410 2.0125 0.4900
5 6 2.2906 1.7591 -1.4475
6 6 3.7775 1.3923 -1.6793
7 6 4.4276 1.7148 -0.3101
8 6 3.3684 1.2777 0.7228
9 1 3.5838 0.2687 1.0743
10 6 3.3543 2.2368 1.8852
11 8 2.5591 3.1523 1.9063
12 7 4.2254 2.0772 2.9011
13 6 5.1170 0.9103 2.9464
14 6 4.9463 0.2116 4.2990
15 6 5.1773 1.2231 5.4239
16 7 5.0475 0.5508 6.7191
17 6 5.6828 1.0585 7.8208
18 1 6.2800 1.9543 7.7348
19 6 5.5602 0.4213 9.0479
20 7 4.8329 -0.6707 9.1526
21 14 6.4275 1.1135 10.5506
22 1 5.9407 2.4918 10.8119
23 1 6.1387 0.2555 11.7278
24 1 7.8920 1.1436 10.3069
25 6 4.1399 2.3440 5.3250
26 6 4.3017 3.0671 3.9842
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3632 0.5137 0.8901
30 1 1.6513 1.2203 -2.1468
31 1 2.1433 2.8346 -1.5454
32 1 3.8817 0.3333 -1.9159
33 1 4.2084 2.0073 -2.4694
34 1 4.6259 2.7831 -0.2244
35 1 5.3466 1.1435 -0.1793
36 1 6.1508 1.2357 2.8312
37 1 4.8571 0.2205 2.1434
38 1 5.6704 -0.5986 4.3839
39 1 3.9368 -0.1926 4.3749
40 1 6.1780 1.6455 5.3328
41 1 4.5081 -0.2516 6.7971
42 1 4.7469 -1.1158 10.0101
43 1 3.1383 1.9195 5.3912
44 1 4.2902 3.0517 6.1403
45 1 5.2692 3.5684 3.9535
46 1 3.5056 3.8018 3.8645
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000996760340.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:46:50
Heat of formation + Delta-G solvation = -78.806429 kcal
Electronic energy + Delta-G solvation = -24972.799475 eV
Core-core repulsion = 21476.177343 eV
Total energy + Delta-G solvation = -3496.622132 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.62349 -38.73423 -37.26020 -35.84973 -34.50002 -32.08203 -31.09424 -29.69543
-28.80754 -28.43062 -26.41946 -24.91517 -23.17659 -22.71283 -21.43044 -20.94462
-19.85231 -18.71078 -17.84351 -17.05930 -16.38103 -16.16660 -15.52060 -15.36394
-14.91082 -14.81526 -14.29147 -14.06767 -13.84754 -13.62258 -13.51460 -13.31766
-12.85475 -12.57417 -12.44209 -12.17580 -11.86772 -11.68315 -11.57645 -11.47346
-11.32286 -11.00782 -10.90846 -10.87332 -10.83095 -10.69797 -10.40347 -10.27856
-9.92704 -9.75021 -9.70572 -9.54548 -8.90867 -8.49558 -6.98678 -5.78326
-3.07582 2.63327 2.99274 3.42719 3.47323 3.48206 3.66053 4.21140
4.33448 4.55764 4.61560 4.80381 4.97873 5.07782 5.15417 5.18573
5.21046 5.24133 5.30592 5.36553 5.41603 5.46402 5.49153 5.55795
5.56783 5.62387 5.64102 5.69134 5.76868 5.80594 5.87659 5.90889
5.99863 6.05978 6.21907 6.29695 6.44475 6.55122 6.60707 6.91832
7.04783 7.05597 7.50927 7.67303 8.21814 8.40014 9.51136 10.08421
10.43153 11.44205
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.028096 B = 0.003165 C = 0.003066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 996.336343 B = 8845.767837 C = 9131.333186
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.384 6.384
3 C 0.092 3.908
4 H 0.085 0.915
5 C -0.143 4.143
6 C -0.118 4.118
7 C -0.107 4.107
8 C -0.116 4.116
9 H 0.110 0.890
10 C 0.523 3.477
11 O -0.550 6.550
12 N -0.602 5.602
13 C 0.108 3.892
14 C -0.141 4.141
15 C 0.179 3.821
16 N -0.724 5.724
17 C -0.241 4.241
18 H 0.070 0.930
19 C -0.013 4.013
20 N -0.933 5.933
21 Si 0.907 3.093
22 H -0.286 1.286
23 H -0.291 1.291
24 H -0.286 1.286
25 C -0.149 4.149
26 C 0.112 3.888
27 H 0.040 0.960
28 H 0.085 0.915
29 H 0.043 0.957
30 H 0.073 0.927
31 H 0.075 0.925
32 H 0.073 0.927
33 H 0.069 0.931
34 H 0.071 0.929
35 H 0.077 0.923
36 H 0.070 0.930
37 H 0.083 0.917
38 H 0.078 0.922
39 H 0.064 0.936
40 H 0.048 0.952
41 H 0.384 0.616
42 H 0.256 0.744
43 H 0.058 0.942
44 H 0.074 0.926
45 H 0.064 0.936
46 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.135 2.934 -22.680 23.083
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.303 6.303
3 C 0.033 3.967
4 H 0.103 0.897
5 C -0.181 4.181
6 C -0.156 4.156
7 C -0.145 4.145
8 C -0.137 4.137
9 H 0.128 0.872
10 C 0.311 3.689
11 O -0.429 6.429
12 N -0.334 5.334
13 C -0.015 4.015
14 C -0.180 4.180
15 C 0.069 3.931
16 N -0.364 5.364
17 C -0.372 4.372
18 H 0.088 0.912
19 C -0.209 4.209
20 N -0.581 5.581
21 Si 0.738 3.262
22 H -0.213 1.213
23 H -0.217 1.217
24 H -0.213 1.213
25 C -0.191 4.191
26 C -0.011 4.011
27 H 0.058 0.942
28 H 0.104 0.896
29 H 0.061 0.939
30 H 0.091 0.909
31 H 0.093 0.907
32 H 0.091 0.909
33 H 0.088 0.912
34 H 0.090 0.910
35 H 0.096 0.904
36 H 0.089 0.911
37 H 0.101 0.899
38 H 0.096 0.904
39 H 0.083 0.917
40 H 0.066 0.934
41 H 0.217 0.783
42 H 0.066 0.934
43 H 0.077 0.923
44 H 0.093 0.907
45 H 0.082 0.918
46 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -3.324 3.322 -22.489 22.974
hybrid contribution 0.051 0.227 1.110 1.134
sum -3.273 3.549 -21.378 21.917
Atomic orbital electron populations
1.22783 0.81038 1.02624 1.00067 1.87887 1.19691 1.27698 1.94978
1.22686 0.93900 0.84965 0.95109 0.89730 1.22838 0.97383 1.01373
0.96463 1.22462 0.94865 1.01771 0.96487 1.22277 0.96971 1.01859
0.93413 1.22015 0.96437 1.00741 0.94503 0.87205 1.20343 0.79898
0.85647 0.83045 1.90642 1.38613 1.34414 1.79216 1.48137 1.37877
1.24476 1.22939 1.21865 0.93777 0.86946 0.98911 1.22215 1.02692
0.99230 0.93822 1.20164 0.95955 0.91029 0.85958 1.42422 1.59536
1.31142 1.03346 1.19189 1.23297 1.07359 0.87338 0.91223 1.24745
1.00620 0.97732 0.97784 1.69652 1.43837 1.20025 1.24589 0.86278
0.79220 0.78027 0.82713 1.21272 1.21707 1.21254 1.22659 1.01623
1.00050 0.94727 1.21719 1.01956 0.90994 0.86418 0.94177 0.89644
0.93854 0.90869 0.90662 0.90864 0.91211 0.90986 0.90395 0.91143
0.89888 0.90383 0.91723 0.93393 0.78277 0.93441 0.92311 0.90750
0.91807 0.89743
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.29 10.85 101.05 1.10 1.39 16
2 O -0.38 -4.56 10.25 -35.23 -0.36 -4.92 16
3 C 0.09 1.06 2.92 -25.61 -0.07 0.98 16
4 H 0.08 1.13 6.30 -51.93 -0.33 0.80 16
5 C -0.14 -1.32 6.57 -25.07 -0.16 -1.48 16
6 C -0.12 -0.96 6.91 -24.70 -0.17 -1.13 16
7 C -0.11 -0.97 6.36 -25.03 -0.16 -1.13 16
8 C -0.12 -1.33 2.31 -90.65 -0.21 -1.54 16
9 H 0.11 1.23 5.97 -51.93 -0.31 0.92 16
10 C 0.52 7.57 6.71 -10.98 -0.07 7.49 16
11 O -0.55 -9.63 14.89 5.56 0.08 -9.55 16
12 N -0.60 -8.48 2.97 -172.77 -0.51 -8.99 16
13 C 0.11 1.33 6.32 -3.71 -0.02 1.30 16
14 C -0.14 -2.18 5.55 -26.62 -0.15 -2.33 16
15 C 0.18 3.42 2.73 -67.89 -0.19 3.23 16
16 N -0.72 -17.81 5.12 -53.38 -0.27 -18.08 16
17 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16
18 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16
19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16
20 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16
21 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16
22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16
24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
25 C -0.15 -2.69 5.66 -26.61 -0.15 -2.84 16
26 C 0.11 1.70 6.44 -3.71 -0.02 1.67 16
27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16
28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16
29 H 0.04 0.42 8.10 -51.93 -0.42 0.00 16
30 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16
31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
34 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16
35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
37 H 0.08 0.84 5.41 -51.93 -0.28 0.56 16
38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
40 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16
41 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16
42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
44 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16
45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
46 H 0.08 1.35 7.00 -51.93 -0.36 0.98 16
LS Contribution 360.34 15.07 5.43 5.43
Total: -1.00 -31.90 360.34 -8.35 -40.25
By element:
Atomic # 1 Polarization: 15.41 SS G_CDS: -7.89 Total: 7.52 kcal
Atomic # 6 Polarization: -1.02 SS G_CDS: -0.53 Total: -1.56 kcal
Atomic # 7 Polarization: -54.32 SS G_CDS: -0.06 Total: -54.38 kcal
Atomic # 8 Polarization: -14.19 SS G_CDS: -0.28 Total: -14.47 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -31.90 -8.35 -40.25 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996760340.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.556 kcal
(2) G-P(sol) polarization free energy of solvation -31.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.454 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.806 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds