Wall clock time and date at job start Tue Mar 31 2020 03:46:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42899 * 113.99939 * 2 1
4 4 H 1.08994 * 110.05372 * 28.59005 * 3 2 1
5 5 C 1.54265 * 110.03341 * 267.16912 * 3 2 1
6 6 C 1.54889 * 104.19437 * 264.32334 * 5 3 2
7 7 C 1.54968 * 102.78188 * 322.08686 * 6 5 3
8 8 C 1.53875 * 110.03055 * 150.00202 * 3 2 1
9 9 H 1.09000 * 110.03400 * 359.94951 * 8 3 2
10 10 C 1.50705 * 110.03216 * 238.57154 * 8 3 2
11 11 O 1.21274 * 120.00052 * 338.18989 * 10 8 3
12 12 N 1.34780 * 119.99731 * 158.19265 * 10 8 3
13 13 C 1.46924 * 120.63190 * 354.79372 * 12 10 8
14 14 C 1.53191 * 108.77231 * 233.58585 * 13 12 10
15 15 C 1.53032 * 109.31640 * 305.36429 * 14 13 12
16 16 N 1.46506 * 109.46317 * 181.38801 * 15 14 13
17 17 C 1.36932 * 120.00143 * 154.97829 * 16 15 14
18 18 H 1.08005 * 120.00032 * 359.97438 * 17 16 15
19 19 C 1.38808 * 120.00124 * 180.02562 * 17 16 15
20 20 N 1.31620 * 119.99986 * 359.97438 * 19 17 16
21 21 Si 1.86801 * 120.00052 * 179.97438 * 19 17 16
22 22 H 1.48495 * 109.47268 * 59.99776 * 21 19 17
23 23 H 1.48504 * 109.47040 * 179.97438 * 21 19 17
24 24 H 1.48504 * 109.47370 * 299.99529 * 21 19 17
25 25 C 1.53045 * 109.52619 * 61.37517 * 15 14 13
26 26 C 1.46929 * 120.62748 * 174.77288 * 12 10 8
27 27 H 1.09000 * 109.46993 * 59.99825 * 1 2 3
28 28 H 1.09002 * 109.46850 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.46623 * 299.99272 * 1 2 3
30 30 H 1.08993 * 110.48892 * 23.00533 * 5 3 2
31 31 H 1.08995 * 110.48205 * 145.64936 * 5 3 2
32 32 H 1.09007 * 110.75239 * 80.37460 * 6 5 3
33 33 H 1.09001 * 110.75652 * 203.55738 * 6 5 3
34 34 H 1.08996 * 110.47406 * 279.23545 * 7 6 5
35 35 H 1.08993 * 110.52947 * 156.56834 * 7 6 5
36 36 H 1.08997 * 109.58499 * 113.80293 * 13 12 10
37 37 H 1.08998 * 109.58844 * 353.37582 * 13 12 10
38 38 H 1.09001 * 109.49790 * 185.41146 * 14 13 12
39 39 H 1.09002 * 109.49834 * 65.31955 * 14 13 12
40 40 H 1.09000 * 109.46456 * 301.36300 * 15 14 13
41 41 H 0.96995 * 119.99662 * 334.69610 * 16 15 14
42 42 H 0.97000 * 119.99915 * 180.02562 * 20 19 17
43 43 H 1.08993 * 109.49834 * 58.58150 * 25 15 14
44 44 H 1.08998 * 109.49770 * 178.67900 * 25 15 14
45 45 H 1.09004 * 109.58379 * 246.20185 * 26 12 10
46 46 H 1.08999 * 109.58566 * 6.47930 * 26 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 1 1.3410 2.0125 0.4900
5 6 2.2906 1.7591 -1.4475
6 6 3.7775 1.3923 -1.6793
7 6 4.4276 1.7148 -0.3101
8 6 3.3684 1.2777 0.7228
9 1 3.5838 0.2687 1.0743
10 6 3.3543 2.2368 1.8852
11 8 2.5591 3.1523 1.9063
12 7 4.2254 2.0772 2.9011
13 6 5.1170 0.9103 2.9464
14 6 4.9463 0.2116 4.2990
15 6 5.1773 1.2231 5.4239
16 7 5.0475 0.5508 6.7191
17 6 5.6828 1.0585 7.8208
18 1 6.2800 1.9543 7.7348
19 6 5.5602 0.4213 9.0479
20 7 4.8329 -0.6707 9.1526
21 14 6.4275 1.1135 10.5506
22 1 5.9407 2.4918 10.8119
23 1 6.1387 0.2555 11.7278
24 1 7.8920 1.1436 10.3069
25 6 4.1399 2.3440 5.3250
26 6 4.3017 3.0671 3.9842
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3632 0.5137 0.8901
30 1 1.6513 1.2203 -2.1468
31 1 2.1433 2.8346 -1.5454
32 1 3.8817 0.3333 -1.9159
33 1 4.2084 2.0073 -2.4694
34 1 4.6259 2.7831 -0.2244
35 1 5.3466 1.1435 -0.1793
36 1 6.1508 1.2357 2.8312
37 1 4.8571 0.2205 2.1434
38 1 5.6704 -0.5986 4.3839
39 1 3.9368 -0.1926 4.3749
40 1 6.1780 1.6455 5.3328
41 1 4.5081 -0.2516 6.7971
42 1 4.7469 -1.1158 10.0101
43 1 3.1383 1.9195 5.3912
44 1 4.2902 3.0517 6.1403
45 1 5.2692 3.5684 3.9535
46 1 3.5056 3.8018 3.8645
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000996760340.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:46:50
Heat of formation + Delta-G solvation = -99.384866 kcal
Electronic energy + Delta-G solvation = -24973.691823 eV
Core-core repulsion = 21476.177343 eV
Total energy + Delta-G solvation = -3497.514480 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.69103 -39.74942 -38.54951 -36.66885 -36.16932 -33.85475 -32.33677 -31.20468
-29.97188 -29.19262 -27.21713 -26.56175 -24.61661 -24.15825 -22.55963 -21.67650
-21.14338 -19.89337 -19.10011 -18.77233 -17.37751 -17.17981 -16.66885 -16.51841
-16.21736 -15.95249 -15.49496 -15.38366 -15.23749 -14.94793 -14.77295 -14.55489
-14.04218 -13.84376 -13.48668 -13.32807 -13.13633 -12.81406 -12.71004 -12.66399
-12.47902 -12.33742 -12.23646 -12.17679 -11.99063 -11.94929 -11.68998 -11.67027
-11.58480 -11.33300 -10.90008 -10.72275 -10.56946 -9.70388 -9.01788 -7.93944
-5.22711 1.47362 1.50036 1.51592 1.55953 1.91390 2.56310 2.80510
3.33773 3.39151 3.55028 3.71910 3.81413 3.85641 4.07693 4.13459
4.16739 4.31138 4.36619 4.38574 4.39771 4.43142 4.45538 4.53816
4.61061 4.70155 4.74991 4.80221 4.81135 4.85401 4.85817 4.91903
4.96787 5.00894 5.09317 5.17405 5.19227 5.30936 5.41568 5.47899
5.52891 5.58913 6.22613 6.27894 6.38531 7.08448 7.33956 8.09968
8.32683 9.29445
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.028096 B = 0.003165 C = 0.003066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 996.336343 B = 8845.767837 C = 9131.333186
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.398 6.398
3 C 0.087 3.913
4 H 0.058 0.942
5 C -0.140 4.140
6 C -0.112 4.112
7 C -0.103 4.103
8 C -0.112 4.112
9 H 0.117 0.883
10 C 0.519 3.481
11 O -0.587 6.587
12 N -0.604 5.604
13 C 0.114 3.886
14 C -0.132 4.132
15 C 0.174 3.826
16 N -0.738 5.738
17 C -0.239 4.239
18 H 0.077 0.923
19 C -0.077 4.077
20 N -0.971 5.971
21 Si 0.971 3.029
22 H -0.280 1.280
23 H -0.298 1.298
24 H -0.275 1.275
25 C -0.138 4.138
26 C 0.121 3.879
27 H 0.054 0.946
28 H 0.101 0.899
29 H 0.032 0.968
30 H 0.081 0.919
31 H 0.073 0.927
32 H 0.080 0.920
33 H 0.087 0.913
34 H 0.065 0.935
35 H 0.101 0.899
36 H 0.096 0.904
37 H 0.112 0.888
38 H 0.084 0.916
39 H 0.049 0.951
40 H 0.054 0.946
41 H 0.371 0.629
42 H 0.250 0.750
43 H 0.034 0.966
44 H 0.057 0.943
45 H 0.086 0.914
46 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.545 3.114 -24.876 25.118
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.317 6.317
3 C 0.029 3.971
4 H 0.076 0.924
5 C -0.178 4.178
6 C -0.149 4.149
7 C -0.141 4.141
8 C -0.133 4.133
9 H 0.135 0.865
10 C 0.309 3.691
11 O -0.468 6.468
12 N -0.335 5.335
13 C -0.008 4.008
14 C -0.171 4.171
15 C 0.065 3.935
16 N -0.377 5.377
17 C -0.370 4.370
18 H 0.095 0.905
19 C -0.269 4.269
20 N -0.622 5.622
21 Si 0.800 3.200
22 H -0.207 1.207
23 H -0.224 1.224
24 H -0.201 1.201
25 C -0.179 4.179
26 C -0.002 4.002
27 H 0.073 0.927
28 H 0.120 0.880
29 H 0.050 0.950
30 H 0.099 0.901
31 H 0.092 0.908
32 H 0.099 0.901
33 H 0.105 0.895
34 H 0.084 0.916
35 H 0.119 0.881
36 H 0.114 0.886
37 H 0.130 0.870
38 H 0.102 0.898
39 H 0.068 0.932
40 H 0.072 0.928
41 H 0.202 0.798
42 H 0.059 0.941
43 H 0.053 0.947
44 H 0.076 0.924
45 H 0.104 0.896
46 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -1.711 3.527 -24.731 25.040
hybrid contribution -0.516 0.200 1.755 1.840
sum -2.226 3.727 -22.976 23.382
Atomic orbital electron populations
1.22929 0.79999 1.03778 1.00272 1.87848 1.20907 1.27807 1.95144
1.22717 0.93465 0.84420 0.96486 0.92368 1.22820 0.98755 1.01324
0.94898 1.22466 0.93542 1.02557 0.96377 1.22329 0.97042 1.01798
0.92950 1.22081 0.97415 0.99995 0.93847 0.86538 1.20927 0.78943
0.85621 0.83630 1.90628 1.39935 1.36147 1.80055 1.48216 1.38155
1.24688 1.22443 1.21994 0.94796 0.86525 0.97490 1.22104 1.01985
0.98646 0.94372 1.20428 0.96282 0.91889 0.84890 1.42660 1.59115
1.31041 1.04873 1.19598 1.22250 1.06977 0.88212 0.90470 1.25546
1.02143 0.98467 1.00734 1.69814 1.45977 1.21663 1.24750 0.85249
0.78554 0.77211 0.78983 1.20662 1.22439 1.20104 1.22447 0.99855
0.99413 0.96175 1.21532 1.02752 0.90824 0.85127 0.92716 0.88036
0.94961 0.90063 0.90829 0.90149 0.89451 0.91634 0.88089 0.88575
0.87031 0.89794 0.93199 0.92823 0.79784 0.94127 0.94664 0.92423
0.89611 0.90759
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.47 10.85 113.37 1.23 1.70 16
2 O -0.40 -8.99 10.25 -148.98 -1.53 -10.52 16
3 C 0.09 1.94 2.92 31.32 0.09 2.03 16
4 H 0.06 1.59 6.30 -2.39 -0.02 1.57 16
5 C -0.14 -2.32 6.57 31.67 0.21 -2.11 16
6 C -0.11 -1.44 6.91 31.91 0.22 -1.22 16
7 C -0.10 -1.54 6.36 31.70 0.20 -1.34 16
8 C -0.11 -2.35 2.31 -10.81 -0.02 -2.38 16
9 H 0.12 2.28 5.97 -2.39 -0.01 2.26 16
10 C 0.52 14.48 6.71 87.66 0.59 15.07 16
11 O -0.59 -20.66 14.89 -3.01 -0.04 -20.70 16
12 N -0.60 -15.99 2.97 -818.91 -2.43 -18.42 16
13 C 0.11 2.45 6.32 86.36 0.55 3.00 16
14 C -0.13 -3.92 5.55 30.67 0.17 -3.75 16
15 C 0.17 6.52 2.73 45.02 0.12 6.64 16
16 N -0.74 -36.68 5.12 -322.81 -1.65 -38.33 16
17 C -0.24 -13.06 9.93 84.03 0.83 -12.22 16
18 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16
19 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16
20 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16
21 Si 0.97 45.97 29.55 68.60 2.03 47.99 16
22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16
23 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16
24 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16
25 C -0.14 -4.99 5.66 30.67 0.17 -4.82 16
26 C 0.12 3.56 6.44 86.36 0.56 4.11 16
27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16
29 H 0.03 0.63 8.10 -2.39 -0.02 0.61 16
30 H 0.08 1.20 8.07 -2.39 -0.02 1.18 16
31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
32 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16
33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
34 H 0.06 1.09 7.85 -2.39 -0.02 1.07 16
35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16
36 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16
37 H 0.11 1.83 5.41 -2.39 -0.01 1.82 16
38 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16
39 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16
40 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16
41 H 0.37 20.06 7.80 -92.71 -0.72 19.34 16
42 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16
43 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16
44 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16
45 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16
46 H 0.07 2.37 7.00 -2.39 -0.02 2.36 16
Total: -1.00 -70.22 360.34 2.27 -67.95
By element:
Atomic # 1 Polarization: 30.33 SS G_CDS: 0.24 Total: 30.57 kcal
Atomic # 6 Polarization: -4.61 SS G_CDS: 5.38 Total: 0.78 kcal
Atomic # 7 Polarization: -112.26 SS G_CDS: -3.80 Total: -116.06 kcal
Atomic # 8 Polarization: -29.65 SS G_CDS: -1.57 Total: -31.22 kcal
Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal
Total: -70.22 2.27 -67.95 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996760340.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.440 kcal
(2) G-P(sol) polarization free energy of solvation -70.216 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.656 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.945 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.385 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds