Wall clock time and date at job start Tue Mar 31 2020 03:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99706 * 2 1 4 4 H 1.09000 * 110.53944 * 332.61025 * 3 2 1 5 5 C 1.54883 * 110.48523 * 95.22619 * 3 2 1 6 6 C 1.54894 * 102.74704 * 156.61721 * 5 3 2 7 7 C 1.54263 * 104.19466 * 322.05887 * 6 5 3 8 8 C 1.53873 * 106.60151 * 23.60963 * 7 6 5 9 9 H 1.08993 * 110.03233 * 240.66601 * 8 7 6 10 10 C 1.50698 * 110.03421 * 119.28119 * 8 7 6 11 11 O 1.21276 * 120.00564 * 241.45640 * 10 8 7 12 12 N 1.34784 * 119.99966 * 61.45338 * 10 8 7 13 13 C 1.46919 * 120.63188 * 179.97438 * 12 10 8 14 14 C 1.53195 * 108.89273 * 233.51696 * 13 12 10 15 15 C 1.53070 * 109.29524 * 305.57804 * 14 13 12 16 16 N 1.46498 * 109.44278 * 181.23594 * 15 14 13 17 17 C 1.36936 * 119.99742 * 84.79956 * 16 15 14 18 18 H 1.07997 * 120.00304 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99612 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00172 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47363 * 89.99819 * 21 19 17 23 23 H 1.48492 * 109.47353 * 209.99911 * 21 19 17 24 24 H 1.48500 * 109.47139 * 330.00007 * 21 19 17 25 25 C 1.53039 * 109.65812 * 61.15209 * 15 14 13 26 26 C 1.46928 * 120.62829 * 359.97438 * 12 10 8 27 27 H 1.08999 * 109.47322 * 59.99955 * 1 2 3 28 28 H 1.08997 * 109.46688 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46810 * 300.00003 * 1 2 3 30 30 H 1.09000 * 110.75631 * 38.30639 * 5 3 2 31 31 H 1.09000 * 110.76046 * 274.93425 * 5 3 2 32 32 H 1.08996 * 110.48394 * 203.37554 * 6 5 3 33 33 H 1.09000 * 110.47971 * 80.73754 * 6 5 3 34 34 H 1.08998 * 110.03068 * 264.31927 * 7 6 5 35 35 H 1.09004 * 110.02746 * 142.89333 * 7 6 5 36 36 H 1.09002 * 109.58751 * 353.37646 * 13 12 10 37 37 H 1.08996 * 109.58750 * 113.65831 * 13 12 10 38 38 H 1.08997 * 109.50046 * 65.38734 * 14 13 12 39 39 H 1.09003 * 109.49733 * 185.48713 * 14 13 12 40 40 H 1.09007 * 109.35101 * 301.12962 * 15 14 13 41 41 H 0.97004 * 120.00020 * 264.79513 * 16 15 14 42 42 H 0.97000 * 120.00375 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.49876 * 178.74890 * 25 15 14 44 44 H 1.09005 * 109.52615 * 58.67140 * 25 15 14 45 45 H 1.08998 * 109.58787 * 246.20220 * 26 12 10 46 46 H 1.09007 * 109.58600 * 6.48533 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3378 2.0235 -0.4696 5 6 2.3514 1.7470 1.4449 6 6 3.4601 2.8063 1.2258 7 6 4.2949 2.2439 0.0568 8 6 3.3731 1.2897 -0.7226 9 1 3.7880 0.2819 -0.7166 10 6 3.2109 1.7724 -2.1410 11 8 2.1129 2.0770 -2.5562 12 7 4.2863 1.8657 -2.9482 13 6 4.1441 2.3340 -4.3335 14 6 4.7744 1.3015 -5.2734 15 6 6.2190 1.0390 -4.8407 16 7 6.8343 0.0740 -5.7551 17 6 7.3974 0.5041 -6.9269 18 1 7.3877 1.5546 -7.1771 19 6 7.9800 -0.4105 -7.7937 20 7 7.9915 -1.6908 -7.4890 21 14 8.7476 0.1761 -9.3924 22 1 10.1796 0.4974 -9.1654 23 1 8.6367 -0.8935 -10.4165 24 1 8.0369 1.3908 -9.8664 25 6 6.2360 0.4756 -3.4179 26 6 5.6230 1.5010 -2.4595 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.7299 0.9063 2.0264 31 1 1.4819 2.1922 1.9283 32 1 4.0747 2.9057 2.1204 33 1 3.0217 3.7666 0.9543 34 1 5.1568 1.6990 0.4418 35 1 4.6250 3.0562 -0.5908 36 1 3.0871 2.4495 -4.5735 37 1 4.6517 3.2916 -4.4494 38 1 4.2076 0.3717 -5.2251 39 1 4.7617 1.6833 -6.2943 40 1 6.7796 1.9735 -4.8679 41 1 6.8428 -0.8697 -5.5306 42 1 8.3988 -2.3298 -8.0945 43 1 7.2641 0.2689 -3.1206 44 1 5.6552 -0.4463 -3.3841 45 1 6.2537 2.3893 -2.4229 46 1 5.5421 1.0690 -1.4619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996760344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:00 Heat of formation + Delta-G solvation = -79.524038 kcal Electronic energy + Delta-G solvation = -25016.608753 eV Core-core repulsion = 21519.955503 eV Total energy + Delta-G solvation = -3496.653250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.64881 -38.62699 -37.19402 -36.09330 -34.48261 -32.08130 -31.11113 -29.68145 -28.82085 -28.43480 -26.25235 -24.93450 -23.10279 -22.77183 -21.33506 -21.05769 -19.89170 -18.87516 -17.55904 -17.05619 -16.50162 -16.29813 -15.47032 -15.06281 -14.81968 -14.72350 -14.58594 -13.88998 -13.84937 -13.64499 -13.52361 -13.27937 -12.97932 -12.71123 -12.39473 -12.24547 -11.99006 -11.65570 -11.50653 -11.47700 -11.30944 -10.96390 -10.92625 -10.86074 -10.80485 -10.77695 -10.41281 -10.24133 -9.89882 -9.70560 -9.68923 -9.54848 -8.91171 -8.48294 -6.98349 -5.78344 -3.07473 2.69440 3.04263 3.42204 3.47587 3.49253 3.65334 4.17248 4.28873 4.56362 4.59432 4.78679 5.00545 5.05599 5.14526 5.18426 5.22695 5.23824 5.28002 5.36170 5.37689 5.45087 5.47145 5.56377 5.57509 5.59043 5.62851 5.71723 5.76433 5.83730 5.84219 5.91167 5.98700 6.00509 6.22212 6.30104 6.44986 6.55670 6.61776 6.92622 7.05158 7.08195 7.53166 7.68006 8.24999 8.39967 9.51211 10.08574 10.43246 11.44259 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029333 B = 0.003133 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.337984 B = 8933.734687 C = 9122.752003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.097 3.903 4 H 0.087 0.913 5 C -0.144 4.144 6 C -0.122 4.122 7 C -0.115 4.115 8 C -0.114 4.114 9 H 0.111 0.889 10 C 0.523 3.477 11 O -0.550 6.550 12 N -0.603 5.603 13 C 0.112 3.888 14 C -0.149 4.149 15 C 0.179 3.821 16 N -0.724 5.724 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.141 4.141 26 C 0.108 3.892 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.174 8.092 19.676 23.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.299 6.299 3 C 0.038 3.962 4 H 0.104 0.896 5 C -0.182 4.182 6 C -0.160 4.160 7 C -0.152 4.152 8 C -0.135 4.135 9 H 0.129 0.871 10 C 0.311 3.689 11 O -0.429 6.429 12 N -0.336 5.336 13 C -0.010 4.010 14 C -0.191 4.191 15 C 0.069 3.931 16 N -0.365 5.365 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.180 4.180 26 C -0.015 4.015 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.546 8.168 19.268 23.435 hybrid contribution 0.327 0.005 -1.003 1.055 sum -10.219 8.174 18.265 22.469 Atomic orbital electron populations 1.22758 0.80981 1.02549 1.00031 1.87871 1.19832 1.27379 1.94868 1.22896 0.93594 0.85442 0.94242 0.89558 1.22972 0.98957 0.99219 0.97079 1.22277 0.97020 0.98426 0.98251 1.22198 0.97723 0.98466 0.96863 1.21968 0.97322 1.02108 0.92151 0.87095 1.20412 0.83908 0.77293 0.87305 1.90637 1.25364 1.50677 1.76178 1.48113 1.07524 1.65070 1.12877 1.21694 1.02150 0.97243 0.79935 1.22664 0.99294 0.98261 0.98835 1.20164 0.91243 0.93611 0.88078 1.42430 1.67719 1.05789 1.20532 1.19234 1.29180 0.92846 0.95830 0.91177 1.24747 1.01767 0.95366 0.99042 1.69657 1.50071 1.00559 1.37785 0.86204 0.79180 0.77415 0.83476 1.21729 1.21796 1.20757 1.22212 1.01152 0.98372 0.96261 1.21898 0.82788 0.98796 0.98058 0.93603 0.89811 0.94336 0.90293 0.91272 0.90853 0.91310 0.90167 0.90749 0.89796 0.91886 0.92311 0.90734 0.93468 0.78277 0.93495 0.90433 0.91717 0.91219 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 101.05 1.10 1.43 16 2 O -0.38 -4.79 10.41 -35.23 -0.37 -5.16 16 3 C 0.10 1.10 2.66 -25.07 -0.07 1.03 16 4 H 0.09 1.10 6.58 -51.93 -0.34 0.76 16 5 C -0.14 -1.23 6.62 -24.74 -0.16 -1.39 16 6 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16 7 C -0.11 -0.97 4.79 -25.62 -0.12 -1.10 16 8 C -0.11 -1.30 2.18 -90.65 -0.20 -1.50 16 9 H 0.11 1.27 7.63 -51.93 -0.40 0.88 16 10 C 0.52 7.64 6.87 -10.98 -0.08 7.57 16 11 O -0.55 -9.79 14.83 5.56 0.08 -9.71 16 12 N -0.60 -8.49 2.94 -172.79 -0.51 -9.00 16 13 C 0.11 1.72 6.43 -3.71 -0.02 1.69 16 14 C -0.15 -2.69 5.67 -26.59 -0.15 -2.84 16 15 C 0.18 3.41 2.73 -67.88 -0.19 3.23 16 16 N -0.72 -17.79 5.12 -53.37 -0.27 -18.07 16 17 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 21 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.14 -2.17 5.55 -26.63 -0.15 -2.32 16 26 C 0.11 1.30 5.30 -3.73 -0.02 1.28 16 27 H 0.05 0.48 8.11 -51.93 -0.42 0.06 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.56 7.66 -51.93 -0.40 0.16 16 35 H 0.07 0.66 7.08 -51.93 -0.37 0.29 16 36 H 0.08 1.36 7.01 -51.93 -0.36 0.99 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 41 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.82 4.74 -51.92 -0.25 0.57 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -32.25 357.66 -8.34 -40.59 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.89 Total: 7.20 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -0.47 Total: -1.17 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.06 Total: -54.36 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.28 Total: -14.87 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.25 -8.34 -40.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996760344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.930 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds