Wall clock time and date at job start Tue Mar 31 2020 03:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99706 * 2 1 4 4 H 1.09000 * 110.53944 * 332.61025 * 3 2 1 5 5 C 1.54883 * 110.48523 * 95.22619 * 3 2 1 6 6 C 1.54894 * 102.74704 * 156.61721 * 5 3 2 7 7 C 1.54263 * 104.19466 * 322.05887 * 6 5 3 8 8 C 1.53873 * 106.60151 * 23.60963 * 7 6 5 9 9 H 1.08993 * 110.03233 * 240.66601 * 8 7 6 10 10 C 1.50698 * 110.03421 * 119.28119 * 8 7 6 11 11 O 1.21276 * 120.00564 * 241.45640 * 10 8 7 12 12 N 1.34784 * 119.99966 * 61.45338 * 10 8 7 13 13 C 1.46919 * 120.63188 * 179.97438 * 12 10 8 14 14 C 1.53195 * 108.89273 * 233.51696 * 13 12 10 15 15 C 1.53070 * 109.29524 * 305.57804 * 14 13 12 16 16 N 1.46498 * 109.44278 * 181.23594 * 15 14 13 17 17 C 1.36936 * 119.99742 * 84.79956 * 16 15 14 18 18 H 1.07997 * 120.00304 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99612 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00172 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47363 * 89.99819 * 21 19 17 23 23 H 1.48492 * 109.47353 * 209.99911 * 21 19 17 24 24 H 1.48500 * 109.47139 * 330.00007 * 21 19 17 25 25 C 1.53039 * 109.65812 * 61.15209 * 15 14 13 26 26 C 1.46928 * 120.62829 * 359.97438 * 12 10 8 27 27 H 1.08999 * 109.47322 * 59.99955 * 1 2 3 28 28 H 1.08997 * 109.46688 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46810 * 300.00003 * 1 2 3 30 30 H 1.09000 * 110.75631 * 38.30639 * 5 3 2 31 31 H 1.09000 * 110.76046 * 274.93425 * 5 3 2 32 32 H 1.08996 * 110.48394 * 203.37554 * 6 5 3 33 33 H 1.09000 * 110.47971 * 80.73754 * 6 5 3 34 34 H 1.08998 * 110.03068 * 264.31927 * 7 6 5 35 35 H 1.09004 * 110.02746 * 142.89333 * 7 6 5 36 36 H 1.09002 * 109.58751 * 353.37646 * 13 12 10 37 37 H 1.08996 * 109.58750 * 113.65831 * 13 12 10 38 38 H 1.08997 * 109.50046 * 65.38734 * 14 13 12 39 39 H 1.09003 * 109.49733 * 185.48713 * 14 13 12 40 40 H 1.09007 * 109.35101 * 301.12962 * 15 14 13 41 41 H 0.97004 * 120.00020 * 264.79513 * 16 15 14 42 42 H 0.97000 * 120.00375 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.49876 * 178.74890 * 25 15 14 44 44 H 1.09005 * 109.52615 * 58.67140 * 25 15 14 45 45 H 1.08998 * 109.58787 * 246.20220 * 26 12 10 46 46 H 1.09007 * 109.58600 * 6.48533 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3378 2.0235 -0.4696 5 6 2.3514 1.7470 1.4449 6 6 3.4601 2.8063 1.2258 7 6 4.2949 2.2439 0.0568 8 6 3.3731 1.2897 -0.7226 9 1 3.7880 0.2819 -0.7166 10 6 3.2109 1.7724 -2.1410 11 8 2.1129 2.0770 -2.5562 12 7 4.2863 1.8657 -2.9482 13 6 4.1441 2.3340 -4.3335 14 6 4.7744 1.3015 -5.2734 15 6 6.2190 1.0390 -4.8407 16 7 6.8343 0.0740 -5.7551 17 6 7.3974 0.5041 -6.9269 18 1 7.3877 1.5546 -7.1771 19 6 7.9800 -0.4105 -7.7937 20 7 7.9915 -1.6908 -7.4890 21 14 8.7476 0.1761 -9.3924 22 1 10.1796 0.4974 -9.1654 23 1 8.6367 -0.8935 -10.4165 24 1 8.0369 1.3908 -9.8664 25 6 6.2360 0.4756 -3.4179 26 6 5.6230 1.5010 -2.4595 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.7299 0.9063 2.0264 31 1 1.4819 2.1922 1.9283 32 1 4.0747 2.9057 2.1204 33 1 3.0217 3.7666 0.9543 34 1 5.1568 1.6990 0.4418 35 1 4.6250 3.0562 -0.5908 36 1 3.0871 2.4495 -4.5735 37 1 4.6517 3.2916 -4.4494 38 1 4.2076 0.3717 -5.2251 39 1 4.7617 1.6833 -6.2943 40 1 6.7796 1.9735 -4.8679 41 1 6.8428 -0.8697 -5.5306 42 1 8.3988 -2.3298 -8.0945 43 1 7.2641 0.2689 -3.1206 44 1 5.6552 -0.4463 -3.3841 45 1 6.2537 2.3893 -2.4229 46 1 5.5421 1.0690 -1.4619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996760344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:59 Heat of formation + Delta-G solvation = -100.700022 kcal Electronic energy + Delta-G solvation = -25017.527012 eV Core-core repulsion = 21519.955503 eV Total energy + Delta-G solvation = -3497.571509 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71046 -39.64610 -38.49269 -36.91705 -36.13916 -33.84578 -32.34372 -31.19053 -29.95038 -29.19611 -27.08547 -26.55039 -24.61359 -24.13714 -22.50097 -21.73890 -21.13187 -20.06699 -19.11753 -18.40976 -17.52884 -17.35864 -16.71147 -16.42656 -15.97528 -15.70284 -15.48076 -15.43705 -15.37507 -15.02575 -14.65663 -14.48151 -14.11332 -13.89950 -13.47621 -13.33694 -13.18742 -12.90838 -12.83873 -12.65664 -12.40794 -12.25581 -12.19169 -12.15519 -12.00094 -11.93070 -11.69546 -11.61580 -11.60708 -11.30198 -10.90370 -10.72034 -10.50984 -9.69579 -9.01429 -7.94017 -5.22575 1.47458 1.48729 1.56437 1.57134 1.95086 2.56237 2.82939 3.33501 3.39371 3.50638 3.76059 3.83763 3.85979 4.08552 4.15647 4.18091 4.29925 4.37165 4.39509 4.40240 4.44625 4.51237 4.53030 4.62722 4.64591 4.70019 4.81251 4.81384 4.83370 4.86825 4.96328 4.98231 5.07395 5.10080 5.16919 5.20896 5.31791 5.40698 5.48410 5.53404 5.59983 6.25175 6.28047 6.40688 7.10865 7.34116 8.10225 8.32854 9.29553 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029333 B = 0.003133 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.337984 B = 8933.734687 C = 9122.752003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.403 6.403 3 C 0.090 3.910 4 H 0.065 0.935 5 C -0.136 4.136 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.112 4.112 9 H 0.113 0.887 10 C 0.517 3.483 11 O -0.589 6.589 12 N -0.604 5.604 13 C 0.121 3.879 14 C -0.138 4.138 15 C 0.173 3.827 16 N -0.738 5.738 17 C -0.237 4.237 18 H 0.077 0.923 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.970 3.030 22 H -0.285 1.285 23 H -0.299 1.299 24 H -0.270 1.270 25 C -0.133 4.133 26 C 0.114 3.886 27 H 0.031 0.969 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.035 0.965 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.095 0.905 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.442 9.677 21.837 25.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.323 6.323 3 C 0.032 3.968 4 H 0.083 0.917 5 C -0.174 4.174 6 C -0.155 4.155 7 C -0.150 4.150 8 C -0.133 4.133 9 H 0.131 0.869 10 C 0.307 3.693 11 O -0.470 6.470 12 N -0.336 5.336 13 C -0.002 4.002 14 C -0.179 4.179 15 C 0.065 3.935 16 N -0.377 5.377 17 C -0.369 4.369 18 H 0.095 0.905 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.800 3.200 22 H -0.212 1.212 23 H -0.226 1.226 24 H -0.195 1.195 25 C -0.171 4.171 26 C -0.008 4.008 27 H 0.049 0.951 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.202 0.798 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.113 0.887 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.819 9.802 21.464 25.557 hybrid contribution 0.010 -0.475 -1.662 1.728 sum -9.809 9.327 19.802 23.986 Atomic orbital electron populations 1.22875 0.79958 1.03518 1.00271 1.87826 1.21102 1.28239 1.95099 1.23008 0.93105 0.84590 0.96146 0.91667 1.22930 0.99821 0.99715 0.94933 1.22292 0.96708 0.97767 0.98745 1.22268 0.97898 0.97996 0.96788 1.22058 0.98337 1.02739 0.90206 0.86938 1.21073 0.83218 0.76439 0.88559 1.90620 1.26867 1.52343 1.77154 1.48191 1.08441 1.64752 1.12190 1.21497 1.01343 0.97054 0.80296 1.22454 0.98640 0.97985 0.98796 1.20432 0.90945 0.92846 0.89275 1.42665 1.68050 1.06104 1.20863 1.19627 1.27702 0.93076 0.96469 0.90502 1.25540 1.03345 0.95570 1.02464 1.69813 1.51815 1.01647 1.38899 0.85182 0.78416 0.76938 0.79501 1.21237 1.22593 1.19507 1.22106 1.01792 0.98671 0.94577 1.22046 0.81620 0.98950 0.98215 0.95071 0.88549 0.92376 0.89734 0.90352 0.88539 0.91523 0.87677 0.90741 0.90971 0.89780 0.94650 0.92447 0.92930 0.79752 0.94136 0.89727 0.93099 0.88704 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.85 113.37 1.23 1.81 16 2 O -0.40 -9.89 10.41 -148.98 -1.55 -11.45 16 3 C 0.09 1.94 2.66 31.67 0.08 2.03 16 4 H 0.07 1.68 6.58 -2.39 -0.02 1.66 16 5 C -0.14 -1.96 6.62 31.88 0.21 -1.75 16 6 C -0.12 -1.36 6.83 31.67 0.22 -1.14 16 7 C -0.11 -1.49 4.79 31.32 0.15 -1.34 16 8 C -0.11 -2.35 2.18 -10.82 -0.02 -2.37 16 9 H 0.11 2.34 7.63 -2.39 -0.02 2.32 16 10 C 0.52 14.66 6.87 87.66 0.60 15.26 16 11 O -0.59 -21.21 14.83 -3.02 -0.04 -21.26 16 12 N -0.60 -16.06 2.94 -818.97 -2.41 -18.46 16 13 C 0.12 3.62 6.43 86.36 0.56 4.18 16 14 C -0.14 -5.01 5.67 30.68 0.17 -4.84 16 15 C 0.17 6.50 2.73 45.03 0.12 6.63 16 16 N -0.74 -36.59 5.12 -322.76 -1.65 -38.24 16 17 C -0.24 -12.96 9.93 84.04 0.83 -12.12 16 18 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.41 5.50 84.87 0.47 -3.94 16 20 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 21 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 C -0.13 -3.88 5.55 30.66 0.17 -3.71 16 26 C 0.11 2.40 5.30 86.35 0.46 2.86 16 27 H 0.03 0.67 8.11 -2.39 -0.02 0.65 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.92 7.66 -2.39 -0.02 0.91 16 35 H 0.07 1.03 7.08 -2.38 -0.02 1.02 16 36 H 0.07 2.35 7.01 -2.39 -0.02 2.34 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.05 1.94 8.08 -2.38 -0.02 1.92 16 41 H 0.37 20.01 7.80 -92.71 -0.72 19.29 16 42 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.11 1.78 4.74 -2.38 -0.01 1.77 16 Total: -1.00 -71.50 357.66 2.14 -69.36 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.24 Total: 29.70 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.25 Total: 1.55 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -3.78 Total: -115.95 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -1.60 Total: -32.70 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -71.50 2.14 -69.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996760344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.342 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds