Wall clock time and date at job start Tue Mar 31 2020 03:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00264 * 2 1 4 4 H 1.09003 * 109.46708 * 30.00287 * 3 2 1 5 5 C 1.50701 * 109.47316 * 149.99771 * 3 2 1 6 6 O 1.21287 * 119.99740 * 34.32179 * 5 3 2 7 7 N 1.34768 * 120.00441 * 214.32547 * 5 3 2 8 8 C 1.46927 * 120.62701 * 355.92649 * 7 5 3 9 9 C 1.53199 * 108.77779 * 233.63373 * 8 7 5 10 10 C 1.53042 * 109.30605 * 305.36525 * 9 8 7 11 11 C 1.53037 * 109.53963 * 61.36683 * 10 9 8 12 12 H 1.09006 * 109.49998 * 58.61438 * 11 10 9 13 13 N 1.46503 * 109.49755 * 178.67747 * 11 10 9 14 14 C 1.36933 * 119.99963 * 274.99924 * 13 11 10 15 15 H 1.08001 * 120.00573 * 359.72219 * 14 13 11 16 16 C 1.38815 * 119.99973 * 179.72245 * 14 13 11 17 17 N 1.31613 * 120.00126 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99861 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47097 * 89.99878 * 18 16 14 20 20 H 1.48496 * 109.47082 * 209.99774 * 18 16 14 21 21 H 1.48503 * 109.47153 * 329.99822 * 18 16 14 22 22 C 1.46917 * 120.63387 * 175.95214 * 7 5 3 23 23 C 1.52996 * 109.47112 * 269.99907 * 3 2 1 24 24 C 1.53786 * 113.61274 * 158.12097 * 23 3 2 25 25 C 1.53776 * 87.08297 * 220.02072 * 24 23 3 26 26 C 1.53781 * 87.08229 * 25.43158 * 25 24 23 27 27 H 1.09006 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47023 * 300.00011 * 1 2 3 29 29 H 1.08999 * 109.46768 * 59.99809 * 1 2 3 30 30 H 1.08997 * 109.58851 * 113.84573 * 8 7 5 31 31 H 1.09001 * 109.70593 * 353.48913 * 8 7 5 32 32 H 1.09001 * 109.49496 * 185.41466 * 9 8 7 33 33 H 1.08999 * 109.49548 * 65.31610 * 9 8 7 34 34 H 1.08994 * 109.46216 * 301.34133 * 10 9 8 35 35 H 1.09002 * 109.44144 * 181.37719 * 10 9 8 36 36 H 0.97003 * 119.99819 * 94.72157 * 13 11 10 37 37 H 0.97003 * 120.00389 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.59006 * 6.58192 * 22 7 5 39 39 H 1.09003 * 109.58830 * 246.15019 * 22 7 5 40 40 H 1.08997 * 112.85036 * 289.43267 * 23 3 2 41 41 H 1.09001 * 113.61253 * 334.57271 * 24 23 3 42 42 H 1.08998 * 113.60841 * 105.46862 * 24 23 3 43 43 H 1.08999 * 113.61393 * 270.88849 * 25 24 23 44 44 H 1.08994 * 113.61725 * 139.98498 * 25 24 23 45 45 H 1.08995 * 113.61957 * 220.01238 * 26 25 24 46 46 H 1.09002 * 113.68834 * 89.12334 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3387 1.2639 0.7105 6 8 4.0398 0.2777 0.6280 7 7 3.7476 2.3225 1.4374 8 6 2.9519 3.5571 1.4748 9 6 3.8519 4.7356 1.0901 10 6 5.0811 4.7522 2.0017 11 6 5.8747 3.4571 1.8143 12 1 6.1737 3.3614 0.7705 13 7 7.0679 3.4876 2.6639 14 6 8.2102 4.0971 2.2183 15 1 8.2331 4.5515 1.2388 16 6 9.3390 4.1310 3.0256 17 7 10.4372 4.7164 2.5971 18 14 9.2998 3.3444 4.7194 19 1 9.7210 1.9242 4.6156 20 1 10.2267 4.0708 5.6240 21 1 7.9204 3.4130 5.2652 22 6 4.9976 2.2641 2.2071 23 6 2.2178 1.7713 -1.4425 24 6 2.3231 3.2987 -1.5874 25 6 1.4782 3.1570 -2.8644 26 6 0.9145 1.8632 -2.2537 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.5605 3.7093 2.4806 31 1 2.1251 3.4830 0.7684 32 1 3.2998 5.6682 1.2068 33 1 4.1694 4.6275 0.0530 34 1 4.7618 4.8354 3.0405 35 1 5.7110 5.6043 1.7460 36 1 7.0474 3.0794 3.5436 37 1 11.2261 4.7398 3.1610 38 1 5.5221 1.3354 1.9825 39 1 4.7731 2.3109 3.2728 40 1 3.0123 1.2271 -1.9529 41 1 1.8217 3.8485 -0.7908 42 1 3.3380 3.6507 -1.7720 43 1 2.0711 2.9928 -3.7642 44 1 0.7335 3.9437 -2.9848 45 1 0.7921 1.0564 -2.9762 46 1 0.0279 2.0191 -1.6391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999814917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:01 Heat of formation + Delta-G solvation = -34.989831 kcal Electronic energy + Delta-G solvation = -25520.104094 eV Core-core repulsion = 22025.381992 eV Total energy + Delta-G solvation = -3494.722102 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.83643 -38.95469 -37.57392 -36.85026 -34.65981 -32.27029 -31.48130 -30.22931 -28.61935 -26.75039 -25.87439 -25.40736 -24.01330 -22.93737 -21.99393 -20.30839 -19.86101 -19.03453 -17.65995 -17.61747 -16.61102 -16.42642 -15.87110 -15.35200 -14.89475 -14.65973 -14.38548 -14.21409 -13.91140 -13.73244 -13.64345 -13.05354 -12.98542 -12.75484 -12.66075 -12.46928 -12.31697 -12.14264 -11.83552 -11.32278 -11.19506 -11.10206 -11.00967 -10.78738 -10.65893 -10.61360 -10.43634 -10.41075 -10.09634 -9.88484 -9.60438 -9.32808 -8.94205 -8.48327 -7.30215 -5.78049 -3.14627 2.56461 2.78758 3.37768 3.41401 3.46079 3.69846 4.17600 4.34389 4.36663 4.48723 4.58567 4.59018 4.78282 4.82286 4.97752 5.05342 5.08434 5.13035 5.18675 5.32857 5.35637 5.38579 5.46806 5.47638 5.51916 5.58930 5.62175 5.64681 5.69792 5.73786 5.88183 5.89952 6.02843 6.10113 6.17161 6.29831 6.42083 6.55005 6.76097 6.85352 6.93494 7.47667 7.96722 8.25557 8.40316 9.17960 9.90431 10.09271 11.40069 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.003890 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.799413 B = 7196.524541 C = 7694.540222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.358 6.358 3 C 0.084 3.916 4 H 0.080 0.920 5 C 0.518 3.482 6 O -0.521 6.521 7 N -0.601 5.601 8 C 0.097 3.903 9 C -0.133 4.133 10 C -0.137 4.137 11 C 0.173 3.827 12 H 0.059 0.941 13 N -0.745 5.745 14 C -0.244 4.244 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.933 5.933 18 Si 0.884 3.116 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.277 1.277 22 C 0.104 3.896 23 C -0.126 4.126 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.135 4.135 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.406 -2.313 -6.952 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.276 6.276 3 C 0.023 3.977 4 H 0.098 0.902 5 C 0.304 3.696 6 O -0.396 6.396 7 N -0.337 5.337 8 C -0.026 4.026 9 C -0.172 4.172 10 C -0.178 4.178 11 C 0.063 3.937 12 H 0.077 0.923 13 N -0.388 5.388 14 C -0.373 4.373 15 H 0.108 0.892 16 C -0.189 4.189 17 N -0.580 5.580 18 Si 0.714 3.286 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.019 4.019 23 C -0.145 4.145 24 C -0.179 4.179 25 C -0.176 4.176 26 C -0.172 4.172 27 H 0.107 0.893 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.708 -2.926 -7.128 25.882 hybrid contribution -0.086 -0.153 1.358 1.369 sum -24.795 -3.079 -5.771 25.643 Atomic orbital electron populations 1.23075 0.80971 1.03252 1.00337 1.88034 1.19427 1.25202 1.94910 1.22064 0.93475 0.86400 0.95763 0.90206 1.20266 0.87609 0.82950 0.78807 1.90714 1.55763 1.32300 1.60807 1.47998 1.24100 1.13622 1.47935 1.22038 0.94113 0.84500 1.01900 1.21962 0.97382 0.96809 1.01067 1.22244 0.95584 1.01391 0.98562 1.20452 0.86358 0.91102 0.95801 0.92252 1.42674 1.09785 1.69196 1.17117 1.19028 0.87754 1.28784 1.01766 0.89167 1.24658 0.95722 1.00437 0.98114 1.69696 1.02367 1.48579 1.37394 0.86564 0.77089 0.79433 0.85518 1.20948 1.21731 1.20328 1.22014 0.83823 1.01576 0.94491 1.23017 1.00054 0.97164 0.94255 1.23175 1.01562 0.94805 0.98310 1.22799 0.99521 0.97687 0.97638 1.22999 0.96499 0.98478 0.99224 0.89301 0.94063 0.93001 0.91415 0.89870 0.91145 0.91348 0.92592 0.91014 0.80595 0.93011 0.88742 0.91787 0.87803 0.89411 0.90430 0.89915 0.91174 0.90976 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.58 101.05 1.07 1.23 16 2 O -0.36 -4.57 10.05 -52.29 -0.53 -5.10 16 3 C 0.08 0.98 1.93 -27.88 -0.05 0.92 16 4 H 0.08 0.71 5.71 -51.93 -0.30 0.42 16 5 C 0.52 8.08 6.84 -10.99 -0.08 8.01 16 6 O -0.52 -10.54 16.21 -11.51 -0.19 -10.73 16 7 N -0.60 -8.60 2.97 -172.77 -0.51 -9.11 16 8 C 0.10 1.03 5.64 -3.71 -0.02 1.00 16 9 C -0.13 -1.55 6.08 -26.61 -0.16 -1.71 16 10 C -0.14 -2.20 5.46 -26.69 -0.15 -2.35 16 11 C 0.17 3.30 2.92 -67.81 -0.20 3.10 16 12 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 13 N -0.75 -17.51 4.93 -53.31 -0.26 -17.77 16 14 C -0.24 -6.83 10.41 -15.06 -0.16 -6.98 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 16 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 17 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 18 Si 0.88 22.16 27.74 -169.99 -4.71 17.44 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 21 H -0.28 -6.49 6.52 56.52 0.37 -6.13 16 22 C 0.10 1.77 5.91 -3.71 -0.02 1.74 16 23 C -0.13 -1.27 3.34 -89.81 -0.30 -1.57 16 24 C -0.14 -1.18 6.48 -25.92 -0.17 -1.35 16 25 C -0.14 -0.98 8.08 -25.92 -0.21 -1.19 16 26 C -0.13 -1.00 6.16 -25.92 -0.16 -1.16 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 29 H 0.05 0.33 4.98 -51.93 -0.26 0.07 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.67 2.78 -51.93 -0.14 0.53 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.81 7.26 -51.93 -0.38 0.44 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.36 8.35 5.66 -40.82 -0.23 8.12 16 37 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 38 H 0.09 1.83 7.00 -51.93 -0.36 1.47 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.09 0.61 5.76 -51.93 -0.30 0.31 16 42 H 0.08 0.74 7.57 -51.93 -0.39 0.34 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.50 6.39 -51.93 -0.33 0.17 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -34.35 349.00 -8.22 -42.57 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.35 Total: 6.15 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.70 Total: -0.20 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.00 Total: -55.40 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.71 Total: -15.83 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.35 -8.22 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999814917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.577 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds