Wall clock time and date at job start Tue Mar 31 2020 03:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00264 * 2 1 4 4 H 1.09003 * 109.46708 * 30.00287 * 3 2 1 5 5 C 1.50701 * 109.47316 * 149.99771 * 3 2 1 6 6 O 1.21287 * 119.99740 * 34.32179 * 5 3 2 7 7 N 1.34768 * 120.00441 * 214.32547 * 5 3 2 8 8 C 1.46927 * 120.62701 * 355.92649 * 7 5 3 9 9 C 1.53199 * 108.77779 * 233.63373 * 8 7 5 10 10 C 1.53042 * 109.30605 * 305.36525 * 9 8 7 11 11 C 1.53037 * 109.53963 * 61.36683 * 10 9 8 12 12 H 1.09006 * 109.49998 * 58.61438 * 11 10 9 13 13 N 1.46503 * 109.49755 * 178.67747 * 11 10 9 14 14 C 1.36933 * 119.99963 * 274.99924 * 13 11 10 15 15 H 1.08001 * 120.00573 * 359.72219 * 14 13 11 16 16 C 1.38815 * 119.99973 * 179.72245 * 14 13 11 17 17 N 1.31613 * 120.00126 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99861 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47097 * 89.99878 * 18 16 14 20 20 H 1.48496 * 109.47082 * 209.99774 * 18 16 14 21 21 H 1.48503 * 109.47153 * 329.99822 * 18 16 14 22 22 C 1.46917 * 120.63387 * 175.95214 * 7 5 3 23 23 C 1.52996 * 109.47112 * 269.99907 * 3 2 1 24 24 C 1.53786 * 113.61274 * 158.12097 * 23 3 2 25 25 C 1.53776 * 87.08297 * 220.02072 * 24 23 3 26 26 C 1.53781 * 87.08229 * 25.43158 * 25 24 23 27 27 H 1.09006 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47023 * 300.00011 * 1 2 3 29 29 H 1.08999 * 109.46768 * 59.99809 * 1 2 3 30 30 H 1.08997 * 109.58851 * 113.84573 * 8 7 5 31 31 H 1.09001 * 109.70593 * 353.48913 * 8 7 5 32 32 H 1.09001 * 109.49496 * 185.41466 * 9 8 7 33 33 H 1.08999 * 109.49548 * 65.31610 * 9 8 7 34 34 H 1.08994 * 109.46216 * 301.34133 * 10 9 8 35 35 H 1.09002 * 109.44144 * 181.37719 * 10 9 8 36 36 H 0.97003 * 119.99819 * 94.72157 * 13 11 10 37 37 H 0.97003 * 120.00389 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.59006 * 6.58192 * 22 7 5 39 39 H 1.09003 * 109.58830 * 246.15019 * 22 7 5 40 40 H 1.08997 * 112.85036 * 289.43267 * 23 3 2 41 41 H 1.09001 * 113.61253 * 334.57271 * 24 23 3 42 42 H 1.08998 * 113.60841 * 105.46862 * 24 23 3 43 43 H 1.08999 * 113.61393 * 270.88849 * 25 24 23 44 44 H 1.08994 * 113.61725 * 139.98498 * 25 24 23 45 45 H 1.08995 * 113.61957 * 220.01238 * 26 25 24 46 46 H 1.09002 * 113.68834 * 89.12334 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3387 1.2639 0.7105 6 8 4.0398 0.2777 0.6280 7 7 3.7476 2.3225 1.4374 8 6 2.9519 3.5571 1.4748 9 6 3.8519 4.7356 1.0901 10 6 5.0811 4.7522 2.0017 11 6 5.8747 3.4571 1.8143 12 1 6.1737 3.3614 0.7705 13 7 7.0679 3.4876 2.6639 14 6 8.2102 4.0971 2.2183 15 1 8.2331 4.5515 1.2388 16 6 9.3390 4.1310 3.0256 17 7 10.4372 4.7164 2.5971 18 14 9.2998 3.3444 4.7194 19 1 9.7210 1.9242 4.6156 20 1 10.2267 4.0708 5.6240 21 1 7.9204 3.4130 5.2652 22 6 4.9976 2.2641 2.2071 23 6 2.2178 1.7713 -1.4425 24 6 2.3231 3.2987 -1.5874 25 6 1.4782 3.1570 -2.8644 26 6 0.9145 1.8632 -2.2537 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.5605 3.7093 2.4806 31 1 2.1251 3.4830 0.7684 32 1 3.2998 5.6682 1.2068 33 1 4.1694 4.6275 0.0530 34 1 4.7618 4.8354 3.0405 35 1 5.7110 5.6043 1.7460 36 1 7.0474 3.0794 3.5436 37 1 11.2261 4.7398 3.1610 38 1 5.5221 1.3354 1.9825 39 1 4.7731 2.3109 3.2728 40 1 3.0123 1.2271 -1.9529 41 1 1.8217 3.8485 -0.7908 42 1 3.3380 3.6507 -1.7720 43 1 2.0711 2.9928 -3.7642 44 1 0.7335 3.9437 -2.9848 45 1 0.7921 1.0564 -2.9762 46 1 0.0279 2.0191 -1.6391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999814917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:00 Heat of formation + Delta-G solvation = -58.730929 kcal Electronic energy + Delta-G solvation = -25521.133585 eV Core-core repulsion = 22025.381992 eV Total energy + Delta-G solvation = -3495.751593 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.84921 -39.93764 -38.75422 -37.79357 -36.34875 -33.99202 -32.97221 -31.45851 -29.96403 -27.39752 -26.62973 -26.43822 -25.63558 -24.01672 -23.38610 -21.69002 -20.59638 -20.33373 -19.54379 -18.62279 -17.62987 -17.28520 -16.90655 -16.60793 -16.21303 -15.99258 -15.51986 -15.41665 -15.27415 -15.03148 -14.67233 -14.49570 -14.11083 -14.02453 -13.93681 -13.45928 -13.17565 -12.97631 -12.95645 -12.87796 -12.54104 -12.41264 -12.20521 -11.96034 -11.88693 -11.83677 -11.76456 -11.67869 -11.40879 -11.16440 -10.97196 -10.80040 -10.29347 -9.75154 -9.33645 -8.05018 -5.39685 1.35747 1.40467 1.42301 1.46646 1.69052 2.46342 2.87824 3.25770 3.31629 3.51650 3.63413 3.65520 3.81186 3.88524 3.96353 3.99619 4.07180 4.10321 4.16220 4.30803 4.32799 4.50361 4.54627 4.57535 4.70588 4.73220 4.79992 4.80993 4.83570 4.94662 4.95495 5.02343 5.11433 5.12160 5.14955 5.25850 5.39678 5.40190 5.53013 5.55542 5.73773 6.06193 6.18095 6.37672 7.02973 7.07975 7.77791 7.97779 9.16434 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.003890 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.799413 B = 7196.524541 C = 7694.540222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.395 6.395 3 C 0.094 3.906 4 H 0.117 0.883 5 C 0.508 3.492 6 O -0.582 6.582 7 N -0.598 5.598 8 C 0.094 3.906 9 C -0.125 4.125 10 C -0.129 4.129 11 C 0.170 3.830 12 H 0.028 0.972 13 N -0.750 5.750 14 C -0.230 4.230 15 H 0.054 0.946 16 C -0.061 4.061 17 N -0.983 5.983 18 Si 0.954 3.046 19 H -0.283 1.283 20 H -0.293 1.293 21 H -0.247 1.247 22 C 0.113 3.887 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.123 4.123 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.366 0.634 37 H 0.258 0.742 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.907 -1.491 -5.854 30.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.314 6.314 3 C 0.033 3.967 4 H 0.135 0.865 5 C 0.296 3.704 6 O -0.461 6.461 7 N -0.331 5.331 8 C -0.027 4.027 9 C -0.164 4.164 10 C -0.169 4.169 11 C 0.061 3.939 12 H 0.047 0.953 13 N -0.393 5.393 14 C -0.361 4.361 15 H 0.072 0.928 16 C -0.253 4.253 17 N -0.634 5.634 18 Si 0.781 3.219 19 H -0.210 1.210 20 H -0.219 1.219 21 H -0.171 1.171 22 C -0.011 4.011 23 C -0.157 4.157 24 C -0.177 4.177 25 C -0.171 4.171 26 C -0.160 4.160 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.199 0.801 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -29.306 -2.080 -6.044 29.995 hybrid contribution 1.301 -0.422 0.893 1.634 sum -28.004 -2.501 -5.151 28.584 Atomic orbital electron populations 1.23339 0.78476 1.04404 1.02131 1.88000 1.22211 1.26023 1.95124 1.22091 0.91451 0.87036 0.96091 0.86513 1.21231 0.88862 0.82146 0.78140 1.90680 1.57797 1.34701 1.62884 1.48099 1.23159 1.14948 1.46927 1.22385 0.93984 0.81817 1.04503 1.21937 0.95763 0.99268 0.99427 1.22053 0.96681 0.97681 1.00482 1.20613 0.85762 0.94086 0.93411 0.95333 1.42646 1.09969 1.68916 1.17808 1.18941 0.89401 1.27530 1.00211 0.92802 1.25485 0.95285 1.01793 1.02727 1.69877 1.03286 1.50951 1.39244 0.85426 0.78493 0.77847 0.80120 1.21000 1.21941 1.17132 1.21666 0.84831 0.98752 0.95827 1.23030 1.00986 0.98104 0.93584 1.23243 1.01193 0.93323 0.99916 1.22770 0.99511 0.98129 0.96640 1.23016 0.95741 0.98502 0.98766 0.88738 0.92246 0.91033 0.88750 0.86626 0.87313 0.92004 0.91362 0.93752 0.80050 0.93268 0.91948 0.89890 0.91390 0.86975 0.92303 0.90760 0.88945 0.91225 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.58 113.37 1.20 1.35 16 2 O -0.39 -9.48 10.05 -132.67 -1.33 -10.81 16 3 C 0.09 1.98 1.93 29.85 0.06 2.04 16 4 H 0.12 1.51 5.71 -2.39 -0.01 1.49 16 5 C 0.51 15.69 6.84 87.66 0.60 16.29 16 6 O -0.58 -24.63 16.21 13.26 0.21 -24.42 16 7 N -0.60 -16.21 2.97 -818.91 -2.43 -18.65 16 8 C 0.09 1.58 5.64 86.36 0.49 2.07 16 9 C -0.13 -2.50 6.08 30.68 0.19 -2.31 16 10 C -0.13 -3.96 5.46 30.62 0.17 -3.80 16 11 C 0.17 6.59 2.92 45.07 0.13 6.72 16 12 H 0.03 1.27 8.08 -2.38 -0.02 1.25 16 13 N -0.75 -35.70 4.93 -322.56 -1.59 -37.29 16 14 C -0.23 -13.37 10.41 84.03 0.87 -12.49 16 15 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 16 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 17 N -0.98 -64.00 13.97 21.65 0.30 -63.70 16 18 Si 0.95 46.20 27.74 68.60 1.90 48.10 16 19 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.25 -10.61 6.52 99.48 0.65 -9.96 16 22 C 0.11 3.84 5.91 86.36 0.51 4.35 16 23 C -0.14 -2.59 3.34 -10.27 -0.03 -2.62 16 24 C -0.14 -1.96 6.48 31.12 0.20 -1.76 16 25 C -0.13 -1.48 8.08 31.12 0.25 -1.23 16 26 C -0.12 -1.43 6.16 31.12 0.19 -1.24 16 27 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.06 0.54 8.08 -2.39 -0.02 0.52 16 29 H 0.07 0.60 4.98 -2.39 -0.01 0.59 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.12 1.22 2.78 -2.39 -0.01 1.22 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.35 7.26 -2.39 -0.02 1.33 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.37 16.61 5.66 -92.71 -0.52 16.09 16 37 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 38 H 0.06 2.52 7.00 -2.39 -0.02 2.51 16 39 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.11 0.98 5.76 -2.39 -0.01 0.97 16 42 H 0.06 1.06 7.57 -2.39 -0.02 1.04 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.11 0.73 6.39 -2.39 -0.02 0.72 16 Total: -1.00 -81.56 349.00 2.75 -78.81 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.40 Total: 23.80 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.29 Total: 4.15 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -3.72 Total: -119.63 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -1.12 Total: -35.23 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.90 Total: 48.10 kcal Total: -81.56 2.75 -78.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999814917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.080 kcal (2) G-P(sol) polarization free energy of solvation -81.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds