Wall clock time and date at job start Tue Mar 31 2020 03:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47489 * 2 1 4 4 C 1.34776 * 119.99534 * 274.92843 * 3 2 1 5 5 O 1.21289 * 119.99832 * 183.42232 * 4 3 2 6 6 C 1.50697 * 120.00242 * 3.41897 * 4 3 2 7 7 H 1.08994 * 109.52776 * 28.26380 * 6 4 3 8 8 C 1.53182 * 109.52264 * 148.39229 * 6 4 3 9 9 C 1.53176 * 109.03501 * 176.88779 * 8 6 4 10 10 C 1.53086 * 109.16408 * 303.01326 * 9 8 6 11 11 O 1.42909 * 109.41439 * 57.61066 * 10 9 8 12 12 C 1.42899 * 114.09578 * 298.84369 * 11 10 9 13 13 C 1.46494 * 120.00167 * 94.92421 * 3 2 1 14 14 H 1.09000 * 110.63930 * 188.77185 * 13 3 2 15 15 C 1.55158 * 110.72024 * 312.10324 * 13 3 2 16 16 C 1.54916 * 101.57978 * 153.86805 * 15 13 3 17 17 N 1.47426 * 104.83047 * 322.99176 * 16 15 13 18 18 C 1.36940 * 125.64852 * 204.09702 * 17 16 15 19 19 H 1.08003 * 120.00025 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00045 * 0.03737 * 18 17 16 21 21 N 1.31624 * 120.00006 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00138 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46961 * 90.00367 * 22 20 18 24 24 H 1.48498 * 109.46941 * 209.99871 * 22 20 18 25 25 H 1.48497 * 109.47144 * 330.00031 * 22 20 18 26 26 C 1.47026 * 108.70526 * 24.13091 * 17 16 15 27 27 H 1.09003 * 109.47016 * 307.01512 * 1 2 3 28 28 H 1.09002 * 109.46828 * 67.00802 * 1 2 3 29 29 H 1.09002 * 109.47377 * 187.00913 * 1 2 3 30 30 H 1.08994 * 109.47341 * 239.99223 * 2 1 3 31 31 H 1.09004 * 109.46844 * 119.99940 * 2 1 3 32 32 H 1.09006 * 109.54008 * 296.74996 * 8 6 4 33 33 H 1.08997 * 109.54664 * 57.02011 * 8 6 4 34 34 H 1.09003 * 109.52481 * 62.92179 * 9 8 6 35 35 H 1.09004 * 109.52203 * 183.10725 * 9 8 6 36 36 H 1.09001 * 109.48500 * 297.62748 * 10 9 8 37 37 H 1.09005 * 109.49354 * 177.59716 * 10 9 8 38 38 H 1.09000 * 109.48225 * 301.17059 * 12 11 10 39 39 H 1.09007 * 109.48860 * 181.14768 * 12 11 10 40 40 H 1.08994 * 111.00618 * 271.94094 * 15 13 3 41 41 H 1.09000 * 110.99968 * 35.79392 * 15 13 3 42 42 H 1.08999 * 110.36252 * 204.15555 * 16 15 13 43 43 H 1.08998 * 110.36800 * 81.82777 * 16 15 13 44 44 H 0.96991 * 120.00103 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.87852 * 239.52553 * 26 17 16 46 46 H 1.08993 * 110.01385 * 118.42739 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1485 2.0498 -1.1629 5 8 2.6112 3.1710 -1.1693 6 6 1.7192 1.4045 -2.4553 7 1 0.9193 0.6910 -2.2581 8 6 1.2181 2.4808 -3.4232 9 6 0.8582 1.8231 -4.7589 10 6 2.0829 1.0805 -5.2995 11 8 2.5163 0.1161 -4.3381 12 6 2.9107 0.6781 -3.0849 13 6 2.3653 2.0355 1.2640 14 1 2.5604 3.0962 1.1066 15 6 1.2424 1.8299 2.3148 16 6 2.0331 1.9468 3.6418 17 7 3.3296 1.3011 3.3666 18 6 4.1616 0.7498 4.3042 19 1 5.0945 0.2987 3.9999 20 6 3.8057 0.7705 5.6458 21 7 2.6684 1.3195 6.0167 22 14 4.9410 0.0191 6.9249 23 1 5.8867 1.0534 7.4160 24 1 4.1349 -0.4942 8.0616 25 1 5.7036 -1.0991 6.3141 26 6 3.5818 1.3478 1.9189 27 1 -0.3633 0.6187 0.8206 28 1 -0.3633 0.4014 -0.9461 29 1 -0.3634 -1.0200 0.1254 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.3351 2.9644 -3.0053 33 1 2.0012 3.2224 -3.5812 34 1 0.0411 1.1174 -4.6090 35 1 0.5528 2.5893 -5.4716 36 1 2.8863 1.7928 -5.4874 37 1 1.8207 0.5749 -6.2289 38 1 3.7250 1.3851 -3.2438 39 1 3.2449 -0.1174 -2.4187 40 1 0.4883 2.6133 2.2391 41 1 0.7899 0.8433 2.2151 42 1 1.5106 1.4227 4.4421 43 1 2.1793 2.9943 3.9053 44 1 2.4196 1.3336 6.9540 45 1 3.6900 0.3359 1.5287 46 1 4.4857 1.9220 1.7161 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033774190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:27 Heat of formation + Delta-G solvation = -57.141486 kcal Electronic energy + Delta-G solvation = -25487.764812 eV Core-core repulsion = 21992.082143 eV Total energy + Delta-G solvation = -3495.682669 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 3.98 seconds Orbital eigenvalues (eV) -40.63367 -38.93850 -37.32897 -35.31061 -33.82033 -32.42499 -31.39544 -30.42450 -29.18880 -27.17611 -25.34992 -24.84840 -24.25406 -23.18373 -21.25921 -20.24024 -19.92424 -18.62926 -17.30273 -17.04656 -16.62192 -16.33761 -15.78945 -15.16754 -14.86363 -14.61727 -14.24062 -13.98560 -13.86028 -13.60840 -13.38753 -13.12590 -12.88198 -12.46615 -12.38509 -12.15352 -11.85797 -11.72674 -11.52297 -11.26367 -11.18969 -11.08579 -11.04122 -10.88735 -10.81551 -10.61933 -10.30880 -10.12717 -9.88378 -9.81594 -9.57515 -9.42680 -8.67336 -8.40122 -6.86315 -5.67384 -3.09634 2.66120 3.07033 3.39249 3.44321 3.46010 3.61879 4.36758 4.47859 4.51206 4.61425 4.68274 4.81318 4.92526 5.02712 5.13133 5.20993 5.32156 5.40187 5.44339 5.45982 5.48193 5.51379 5.54622 5.59444 5.66345 5.71629 5.78646 5.84078 5.85396 5.88923 6.04879 6.17515 6.24170 6.40726 6.52179 6.58338 6.71380 6.86761 6.99243 7.47378 7.58288 7.62044 7.82154 8.28670 8.33925 9.19497 9.80101 10.44296 11.36373 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.031229 B = 0.003454 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.377772 B = 8103.667207 C = 8272.054791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 N -0.594 5.594 4 C 0.519 3.481 5 O -0.542 6.542 6 C -0.146 4.146 7 H 0.103 0.897 8 C -0.106 4.106 9 C -0.154 4.154 10 C 0.057 3.943 11 O -0.377 6.377 12 C 0.074 3.926 13 C 0.126 3.874 14 H 0.101 0.899 15 C -0.154 4.154 16 C 0.153 3.847 17 N -0.602 5.602 18 C -0.222 4.222 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.130 3.870 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.110 0.890 43 H 0.014 0.986 44 H 0.252 0.748 45 H 0.026 0.974 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 -2.139 -20.001 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.024 4.024 3 N -0.326 5.326 4 C 0.307 3.693 5 O -0.420 6.420 6 C -0.168 4.168 7 H 0.121 0.879 8 C -0.144 4.144 9 C -0.192 4.192 10 C -0.020 4.020 11 O -0.295 6.295 12 C -0.003 4.003 13 C 0.023 3.977 14 H 0.119 0.881 15 C -0.193 4.193 16 C 0.028 3.972 17 N -0.329 5.329 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.746 3.254 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.003 3.997 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.032 0.968 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.996 -1.785 -19.801 20.766 hybrid contribution 0.496 -0.034 0.811 0.952 sum -5.500 -1.820 -18.990 19.853 Atomic orbital electron populations 1.22401 0.95853 1.02680 1.02520 1.21589 0.94519 0.82642 1.03624 1.48037 1.64140 1.14011 1.06379 1.20357 0.78136 0.85933 0.84900 1.90679 1.45035 1.19437 1.86814 1.22089 1.01063 0.99730 0.93883 0.87883 1.21458 1.02161 0.96930 0.93838 1.22203 0.99067 1.00453 0.97496 1.22633 0.95492 0.92048 0.91821 1.87958 1.85152 1.33410 1.23002 1.22454 0.94196 0.98323 0.85318 1.22240 0.96214 0.97700 0.81539 0.88145 1.23485 0.97064 1.01086 0.97709 1.21943 0.85633 0.96416 0.93178 1.44439 1.20564 1.67911 0.99954 1.19074 0.99640 1.29834 0.86501 0.90482 1.24787 0.97759 1.01117 0.96931 1.69780 1.22219 1.49710 1.15378 0.86061 0.79508 0.78672 0.81184 1.21614 1.21644 1.20688 1.21528 0.94644 0.97111 0.86422 0.91112 0.92803 0.91459 0.90791 0.88936 0.91150 0.90400 0.90942 0.90494 0.92962 0.88761 0.92206 0.88264 0.92189 0.91089 0.87270 0.96841 0.93693 0.95599 0.95788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.66 37.16 0.36 -1.53 16 2 C 0.10 1.22 4.64 -4.04 -0.02 1.20 16 3 N -0.59 -8.98 2.48 -164.03 -0.41 -9.38 16 4 C 0.52 7.81 6.68 -10.99 -0.07 7.74 16 5 O -0.54 -10.11 15.56 5.55 0.09 -10.02 16 6 C -0.15 -1.65 1.89 -91.63 -0.17 -1.82 16 7 H 0.10 1.05 5.04 -51.93 -0.26 0.79 16 8 C -0.11 -1.10 4.98 -26.55 -0.13 -1.23 16 9 C -0.15 -1.22 6.14 -26.60 -0.16 -1.38 16 10 C 0.06 0.47 6.84 37.20 0.25 0.72 16 11 O -0.38 -4.04 10.77 -35.23 -0.38 -4.42 16 12 C 0.07 0.81 5.98 37.21 0.22 1.03 16 13 C 0.13 2.34 3.30 -66.10 -0.22 2.12 16 14 H 0.10 2.03 7.06 -51.93 -0.37 1.66 16 15 C -0.15 -2.89 5.85 -24.58 -0.14 -3.03 16 16 C 0.15 3.70 5.89 -2.52 -0.01 3.68 16 17 N -0.60 -15.39 3.39 -170.07 -0.58 -15.97 16 18 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 19 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -26.62 10.09 55.49 0.56 -26.06 16 22 Si 0.92 21.96 29.55 -169.99 -5.02 16.94 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.13 2.78 6.77 -3.06 -0.02 2.76 16 27 H 0.07 0.86 5.97 -51.93 -0.31 0.55 16 28 H 0.05 0.52 6.50 -51.93 -0.34 0.18 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.76 5.86 -51.93 -0.30 0.45 16 31 H 0.09 1.29 6.71 -51.93 -0.35 0.94 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.90 7.76 -51.93 -0.40 0.50 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.10 1.02 7.13 -51.93 -0.37 0.65 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.25 5.21 -51.93 -0.27 0.98 16 42 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.03 0.54 6.89 -51.93 -0.36 0.18 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -31.46 345.14 -8.32 -39.79 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.41 Total: 0.38 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.37 Total: 3.55 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.42 Total: -51.41 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.29 Total: -14.45 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.46 -8.32 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033774190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.354 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds