Wall clock time and date at job start Tue Mar 31 2020 03:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47489 * 2 1 4 4 C 1.34776 * 119.99534 * 274.92843 * 3 2 1 5 5 O 1.21289 * 119.99832 * 183.42232 * 4 3 2 6 6 C 1.50697 * 120.00242 * 3.41897 * 4 3 2 7 7 H 1.08994 * 109.52776 * 28.26380 * 6 4 3 8 8 C 1.53182 * 109.52264 * 148.39229 * 6 4 3 9 9 C 1.53176 * 109.03501 * 176.88779 * 8 6 4 10 10 C 1.53086 * 109.16408 * 303.01326 * 9 8 6 11 11 O 1.42909 * 109.41439 * 57.61066 * 10 9 8 12 12 C 1.42899 * 114.09578 * 298.84369 * 11 10 9 13 13 C 1.46494 * 120.00167 * 94.92421 * 3 2 1 14 14 H 1.09000 * 110.63930 * 188.77185 * 13 3 2 15 15 C 1.55158 * 110.72024 * 312.10324 * 13 3 2 16 16 C 1.54916 * 101.57978 * 153.86805 * 15 13 3 17 17 N 1.47426 * 104.83047 * 322.99176 * 16 15 13 18 18 C 1.36940 * 125.64852 * 204.09702 * 17 16 15 19 19 H 1.08003 * 120.00025 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00045 * 0.03737 * 18 17 16 21 21 N 1.31624 * 120.00006 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00138 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46961 * 90.00367 * 22 20 18 24 24 H 1.48498 * 109.46941 * 209.99871 * 22 20 18 25 25 H 1.48497 * 109.47144 * 330.00031 * 22 20 18 26 26 C 1.47026 * 108.70526 * 24.13091 * 17 16 15 27 27 H 1.09003 * 109.47016 * 307.01512 * 1 2 3 28 28 H 1.09002 * 109.46828 * 67.00802 * 1 2 3 29 29 H 1.09002 * 109.47377 * 187.00913 * 1 2 3 30 30 H 1.08994 * 109.47341 * 239.99223 * 2 1 3 31 31 H 1.09004 * 109.46844 * 119.99940 * 2 1 3 32 32 H 1.09006 * 109.54008 * 296.74996 * 8 6 4 33 33 H 1.08997 * 109.54664 * 57.02011 * 8 6 4 34 34 H 1.09003 * 109.52481 * 62.92179 * 9 8 6 35 35 H 1.09004 * 109.52203 * 183.10725 * 9 8 6 36 36 H 1.09001 * 109.48500 * 297.62748 * 10 9 8 37 37 H 1.09005 * 109.49354 * 177.59716 * 10 9 8 38 38 H 1.09000 * 109.48225 * 301.17059 * 12 11 10 39 39 H 1.09007 * 109.48860 * 181.14768 * 12 11 10 40 40 H 1.08994 * 111.00618 * 271.94094 * 15 13 3 41 41 H 1.09000 * 110.99968 * 35.79392 * 15 13 3 42 42 H 1.08999 * 110.36252 * 204.15555 * 16 15 13 43 43 H 1.08998 * 110.36800 * 81.82777 * 16 15 13 44 44 H 0.96991 * 120.00103 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.87852 * 239.52553 * 26 17 16 46 46 H 1.08993 * 110.01385 * 118.42739 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1485 2.0498 -1.1629 5 8 2.6112 3.1710 -1.1693 6 6 1.7192 1.4045 -2.4553 7 1 0.9193 0.6910 -2.2581 8 6 1.2181 2.4808 -3.4232 9 6 0.8582 1.8231 -4.7589 10 6 2.0829 1.0805 -5.2995 11 8 2.5163 0.1161 -4.3381 12 6 2.9107 0.6781 -3.0849 13 6 2.3653 2.0355 1.2640 14 1 2.5604 3.0962 1.1066 15 6 1.2424 1.8299 2.3148 16 6 2.0331 1.9468 3.6418 17 7 3.3296 1.3011 3.3666 18 6 4.1616 0.7498 4.3042 19 1 5.0945 0.2987 3.9999 20 6 3.8057 0.7705 5.6458 21 7 2.6684 1.3195 6.0167 22 14 4.9410 0.0191 6.9249 23 1 5.8867 1.0534 7.4160 24 1 4.1349 -0.4942 8.0616 25 1 5.7036 -1.0991 6.3141 26 6 3.5818 1.3478 1.9189 27 1 -0.3633 0.6187 0.8206 28 1 -0.3633 0.4014 -0.9461 29 1 -0.3634 -1.0200 0.1254 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.3351 2.9644 -3.0053 33 1 2.0012 3.2224 -3.5812 34 1 0.0411 1.1174 -4.6090 35 1 0.5528 2.5893 -5.4716 36 1 2.8863 1.7928 -5.4874 37 1 1.8207 0.5749 -6.2289 38 1 3.7250 1.3851 -3.2438 39 1 3.2449 -0.1174 -2.4187 40 1 0.4883 2.6133 2.2391 41 1 0.7899 0.8433 2.2151 42 1 1.5106 1.4227 4.4421 43 1 2.1793 2.9943 3.9053 44 1 2.4196 1.3336 6.9540 45 1 3.6900 0.3359 1.5287 46 1 4.4857 1.9220 1.7161 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033774190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:25 Heat of formation + Delta-G solvation = -76.810468 kcal Electronic energy + Delta-G solvation = -25488.617723 eV Core-core repulsion = 21992.082143 eV Total energy + Delta-G solvation = -3496.535580 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.76312 -39.98169 -38.82779 -36.74493 -34.76545 -34.13762 -32.37140 -31.58412 -30.99149 -28.83147 -26.68391 -26.02809 -25.40863 -24.20487 -22.41934 -22.10886 -21.03081 -19.87064 -18.98275 -18.51870 -17.64439 -17.18767 -16.95307 -16.62772 -16.20767 -15.95449 -15.63628 -15.20674 -15.02395 -14.83770 -14.58410 -14.11401 -14.08441 -13.76449 -13.62043 -13.48451 -13.46089 -13.06543 -12.97085 -12.72152 -12.51395 -12.42983 -12.12949 -12.08733 -12.02573 -11.96055 -11.84196 -11.75778 -11.38184 -11.35401 -10.87510 -10.76751 -10.46970 -9.72183 -8.93560 -7.79279 -5.25182 1.46336 1.47785 1.49027 1.57566 1.85356 2.49170 2.84950 3.30859 3.41113 3.64255 3.69515 3.76751 3.85848 3.93819 3.96952 4.03565 4.11179 4.18897 4.24362 4.38433 4.41959 4.53657 4.55048 4.59373 4.61047 4.72304 4.78766 4.85329 4.88345 4.90267 4.95478 5.00388 5.03167 5.09260 5.12053 5.31010 5.39528 5.43847 5.56649 5.59426 5.75557 6.13082 6.26998 6.40072 7.07442 7.08862 7.73367 8.37087 9.22384 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.031229 B = 0.003454 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.377772 B = 8103.667207 C = 8272.054791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.095 3.905 3 N -0.592 5.592 4 C 0.518 3.482 5 O -0.583 6.583 6 C -0.135 4.135 7 H 0.123 0.877 8 C -0.108 4.108 9 C -0.146 4.146 10 C 0.049 3.951 11 O -0.385 6.385 12 C 0.077 3.923 13 C 0.141 3.859 14 H 0.081 0.919 15 C -0.132 4.132 16 C 0.156 3.844 17 N -0.621 5.621 18 C -0.242 4.242 19 H 0.079 0.921 20 C -0.063 4.063 21 N -0.947 5.947 22 Si 0.982 3.018 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.268 1.268 26 C 0.131 3.869 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.117 0.883 38 H 0.048 0.952 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.083 0.917 43 H -0.017 1.017 44 H 0.249 0.751 45 H 0.039 0.961 46 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.156 -3.785 -22.035 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.027 4.027 3 N -0.323 5.323 4 C 0.307 3.693 5 O -0.463 6.463 6 C -0.156 4.156 7 H 0.141 0.859 8 C -0.146 4.146 9 C -0.183 4.183 10 C -0.028 4.028 11 O -0.304 6.304 12 C 0.000 4.000 13 C 0.037 3.963 14 H 0.099 0.901 15 C -0.171 4.171 16 C 0.031 3.969 17 N -0.348 5.348 18 C -0.371 4.371 19 H 0.097 0.903 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.810 3.190 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.193 1.193 26 C 0.005 3.995 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.135 0.865 38 H 0.066 0.934 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.001 0.999 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -6.889 -3.457 -21.877 23.195 hybrid contribution 0.801 0.512 1.393 1.687 sum -6.088 -2.945 -20.484 21.571 Atomic orbital electron populations 1.22357 0.94139 1.03795 1.02685 1.21825 0.95898 0.80744 1.04210 1.48061 1.64045 1.15093 1.05097 1.21056 0.77009 0.85406 0.85786 1.90665 1.46803 1.21451 1.87408 1.22087 1.01731 1.00102 0.91685 0.85945 1.21485 1.01462 0.96489 0.95136 1.22172 0.99076 1.00899 0.96178 1.22873 0.95653 0.92101 0.92123 1.87955 1.85246 1.34205 1.22946 1.22389 0.93560 0.98198 0.85887 1.21769 0.94787 0.96667 0.83103 0.90086 1.23273 0.96695 1.02693 0.94423 1.21732 0.85834 0.94005 0.95339 1.44702 1.20929 1.67731 1.01411 1.19428 1.00187 1.29994 0.87453 0.90266 1.25628 0.99314 1.01822 0.98789 1.70018 1.23637 1.50648 1.15344 0.85029 0.77571 0.77998 0.78404 1.21680 1.21641 1.19290 1.21600 0.95430 0.97768 0.84731 0.92711 0.91310 0.89404 0.88059 0.90513 0.91260 0.92216 0.89942 0.88678 0.93030 0.86479 0.93412 0.87593 0.90430 0.89410 0.89956 0.99875 0.94154 0.94323 0.97276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.66 71.98 0.70 -2.43 16 2 C 0.09 2.10 4.64 86.38 0.40 2.50 16 3 N -0.59 -17.20 2.48 -791.27 -1.96 -19.16 16 4 C 0.52 15.07 6.68 87.66 0.59 15.66 16 5 O -0.58 -21.92 15.56 -3.06 -0.05 -21.97 16 6 C -0.13 -2.75 1.89 -11.45 -0.02 -2.77 16 7 H 0.12 2.04 5.04 -2.39 -0.01 2.02 16 8 C -0.11 -2.03 4.98 30.71 0.15 -1.88 16 9 C -0.15 -1.84 6.14 30.68 0.19 -1.65 16 10 C 0.05 0.66 6.84 72.01 0.49 1.15 16 11 O -0.38 -7.20 10.77 -148.98 -1.60 -8.81 16 12 C 0.08 1.53 5.98 72.01 0.43 1.96 16 13 C 0.14 5.26 3.30 46.18 0.15 5.42 16 14 H 0.08 3.36 7.06 -2.39 -0.02 3.35 16 15 C -0.13 -4.92 5.85 31.99 0.19 -4.73 16 16 C 0.16 7.78 5.89 86.86 0.51 8.29 16 17 N -0.62 -32.55 3.39 -691.98 -2.35 -34.90 16 18 C -0.24 -13.67 10.27 84.03 0.86 -12.81 16 19 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 20 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 21 N -0.95 -56.07 10.09 21.65 0.22 -55.85 16 22 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.13 5.70 6.77 86.73 0.59 6.29 16 27 H 0.05 1.19 5.97 -2.39 -0.01 1.17 16 28 H 0.07 1.06 6.50 -2.39 -0.02 1.04 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.72 5.86 -2.39 -0.01 1.71 16 31 H 0.08 1.99 6.71 -2.39 -0.02 1.98 16 32 H 0.07 1.31 8.14 -2.38 -0.02 1.30 16 33 H 0.06 1.35 7.76 -2.39 -0.02 1.33 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 1.92 7.13 -2.38 -0.02 1.90 16 40 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.09 3.00 5.21 -2.39 -0.01 2.98 16 42 H 0.08 4.57 5.87 -2.39 -0.01 4.56 16 43 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 44 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 45 H 0.04 1.59 6.89 -2.39 -0.02 1.57 16 46 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -69.94 345.14 2.94 -67.00 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.97 Total: 14.20 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 5.69 Total: 11.91 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -4.10 Total: -109.91 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.65 Total: -30.78 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.94 2.94 -67.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033774190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.806 kcal (2) G-P(sol) polarization free energy of solvation -69.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds