Wall clock time and date at job start Tue Mar 31 2020 03:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00162 * 2 1 4 4 C 1.50701 * 109.47083 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00156 * 359.97438 * 4 3 2 6 6 N 1.34786 * 119.99670 * 179.97438 * 4 3 2 7 7 C 1.46923 * 120.63113 * 6.31978 * 6 4 3 8 8 C 1.53198 * 108.77085 * 233.63132 * 7 6 4 9 9 C 1.53040 * 109.31153 * 305.36298 * 8 7 6 10 10 C 1.53043 * 109.53836 * 61.37036 * 9 8 7 11 11 C 1.46924 * 120.62683 * 186.33788 * 6 4 3 12 12 H 1.08997 * 109.59187 * 246.29818 * 11 6 4 13 13 C 1.53002 * 109.58769 * 6.58846 * 11 6 4 14 14 H 1.09002 * 110.91218 * 302.91402 * 13 11 6 15 15 C 1.55149 * 111.00738 * 66.82105 * 13 11 6 16 16 C 1.54332 * 102.94168 * 153.57992 * 15 13 11 17 17 N 1.47015 * 107.26828 * 337.80546 * 16 15 13 18 18 C 1.36946 * 125.64923 * 178.92018 * 17 16 15 19 19 H 1.07999 * 120.00171 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99663 * 0.02771 * 18 17 16 21 21 N 1.31627 * 119.99928 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99856 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47117 * 59.99712 * 22 20 18 24 24 H 1.48500 * 109.46782 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46863 * 299.99365 * 22 20 18 26 26 C 1.47422 * 108.70722 * 358.94176 * 17 16 15 27 27 H 1.09003 * 109.46882 * 60.00421 * 1 2 3 28 28 H 1.08994 * 109.47412 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46991 * 300.00658 * 1 2 3 30 30 H 1.08999 * 109.47467 * 59.99566 * 3 2 1 31 31 H 1.09003 * 109.46655 * 299.99710 * 3 2 1 32 32 H 1.08999 * 109.58378 * 353.41393 * 7 6 4 33 33 H 1.08989 * 109.58614 * 113.70447 * 7 6 4 34 34 H 1.08996 * 109.49905 * 65.31862 * 8 7 6 35 35 H 1.08998 * 109.49490 * 185.41577 * 8 7 6 36 36 H 1.09001 * 109.45910 * 181.38969 * 9 8 7 37 37 H 1.08996 * 109.46002 * 301.36246 * 9 8 7 38 38 H 1.09002 * 109.49699 * 178.68531 * 10 9 8 39 39 H 1.08992 * 109.49660 * 58.58186 * 10 9 8 40 40 H 1.09002 * 110.71923 * 271.93549 * 15 13 11 41 41 H 1.08996 * 110.72464 * 35.03891 * 15 13 11 42 42 H 1.08997 * 109.88330 * 97.22604 * 16 15 13 43 43 H 1.09004 * 109.88092 * 218.39042 * 16 15 13 44 44 H 0.97001 * 119.99835 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.36810 * 265.29124 * 26 17 16 46 46 H 1.09007 * 110.36779 * 142.96660 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0914 0.0015 6 7 4.2765 2.2968 0.0002 7 6 3.6656 3.6258 0.1383 8 6 4.1334 4.5067 -1.0245 9 6 5.6632 4.5194 -1.0661 10 6 6.1807 3.0980 -1.2984 11 6 5.7360 2.2012 -0.1387 12 1 6.2134 2.5302 0.7842 13 6 6.1295 0.7519 -0.4313 14 1 5.7669 0.0848 0.3507 15 6 5.6146 0.3063 -1.8254 16 6 6.6135 -0.8000 -2.2254 17 7 7.8420 -0.5807 -1.4481 18 6 8.9665 -1.3608 -1.4957 19 1 9.8207 -1.1148 -0.8823 20 6 9.0085 -2.4676 -2.3325 21 7 7.9673 -2.7676 -3.0797 22 14 10.5427 -3.5313 -2.3980 23 1 10.8154 -4.0903 -1.0495 24 1 10.3340 -4.6422 -3.3610 25 1 11.6980 -2.7071 -2.8351 26 6 7.6626 0.6177 -0.6085 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 2.5798 3.5333 0.1127 33 1 3.9721 4.0724 1.0841 34 1 3.7472 4.1070 -1.9620 35 1 3.7649 5.5226 -0.8824 36 1 5.9990 5.1653 -1.8774 37 1 6.0491 4.8959 -0.1188 38 1 7.2694 3.1113 -1.3513 39 1 5.7752 2.7115 -2.2334 40 1 4.6037 -0.0948 -1.7530 41 1 5.6495 1.1351 -2.5324 42 1 6.1960 -1.7791 -1.9906 43 1 6.8325 -0.7341 -3.2912 44 1 7.9967 -3.5408 -3.6647 45 1 8.0647 1.4970 -1.1116 46 1 8.1457 0.4790 0.3588 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039180998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:28 Heat of formation + Delta-G solvation = -20.220425 kcal Electronic energy + Delta-G solvation = -25951.381138 eV Core-core repulsion = 22457.299486 eV Total energy + Delta-G solvation = -3494.081652 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.72742 -38.16427 -36.91876 -36.72328 -33.17873 -32.74207 -30.97740 -28.97108 -28.64790 -27.30103 -26.14215 -24.69644 -24.27814 -22.86328 -21.08079 -20.06173 -19.69079 -18.53427 -17.08183 -16.56280 -16.47470 -16.33497 -15.33356 -15.07235 -14.85861 -14.60848 -14.43607 -14.34514 -13.77002 -13.68097 -13.25279 -13.03181 -12.75325 -12.52659 -12.14818 -11.97522 -11.71312 -11.60037 -11.36447 -11.21438 -11.00409 -10.87195 -10.68852 -10.54249 -10.48719 -9.98146 -9.95212 -9.86994 -9.58444 -9.51863 -9.39758 -8.61955 -8.36404 -8.23334 -6.58545 -5.51418 -2.84022 2.72344 2.81192 3.51342 3.54706 3.56686 3.81884 4.52165 4.59271 4.65930 4.74902 4.87597 4.89120 5.01187 5.09400 5.14045 5.19521 5.25170 5.25756 5.43817 5.50127 5.53174 5.66456 5.67085 5.81055 5.85088 5.91243 6.03377 6.07089 6.17818 6.24913 6.30675 6.50540 6.67721 6.71992 6.84975 6.92414 7.02748 7.13438 7.40956 7.55514 7.76547 7.95632 8.09220 8.44916 8.49110 9.42467 10.03732 10.72479 11.59780 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.017062 B = 0.004680 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.660724 B = 5980.923501 C = 7227.745167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.043 3.957 4 C 0.502 3.498 5 O -0.477 6.477 6 N -0.609 5.609 7 C 0.108 3.892 8 C -0.135 4.135 9 C -0.119 4.119 10 C -0.139 4.139 11 C 0.164 3.836 12 H 0.068 0.932 13 C -0.102 4.102 14 H 0.111 0.889 15 C -0.138 4.138 16 C 0.183 3.817 17 N -0.603 5.603 18 C -0.225 4.225 19 H 0.075 0.925 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.135 3.865 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.033 0.967 44 H 0.250 0.750 45 H 0.015 0.985 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.268 17.537 6.417 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C -0.037 4.037 4 C 0.288 3.712 5 O -0.350 6.350 6 N -0.346 5.346 7 C -0.015 4.015 8 C -0.173 4.173 9 C -0.157 4.157 10 C -0.177 4.177 11 C 0.061 3.939 12 H 0.086 0.914 13 C -0.121 4.121 14 H 0.129 0.871 15 C -0.176 4.176 16 C 0.059 3.941 17 N -0.329 5.329 18 C -0.354 4.354 19 H 0.092 0.908 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.008 3.992 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.032 0.968 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -14.812 16.529 6.297 23.070 hybrid contribution 0.516 -0.144 -0.153 0.557 sum -14.296 16.385 6.143 22.596 Atomic orbital electron populations 1.22815 0.80759 1.03271 0.99755 1.88068 1.19426 1.25235 1.95294 1.22343 0.92844 0.86765 1.01712 1.20091 0.88062 0.84713 0.78309 1.90810 1.72422 1.26701 1.45041 1.48017 1.07405 1.05296 1.73887 1.21707 0.97710 0.83319 0.98775 1.21924 0.97067 0.99442 0.98914 1.21532 0.94798 0.97505 1.01846 1.22183 1.01963 0.93917 0.99652 1.21212 0.77758 0.97456 0.97455 0.91391 1.22933 0.95866 0.92769 1.00523 0.87083 1.23264 1.00663 0.99062 0.94584 1.21051 0.84055 0.94518 0.94491 1.44444 1.13703 1.27727 1.47063 1.19022 0.91597 1.04702 1.20044 0.90751 1.24791 0.97692 0.98720 0.99432 1.70006 1.28626 1.28761 1.29506 0.86232 0.82449 0.80070 0.77217 1.21294 1.21699 1.21346 1.21713 0.93055 0.90497 0.93938 0.93982 0.89124 0.94106 0.90970 0.90769 0.90408 0.91305 0.91416 0.91040 0.91824 0.92008 0.90023 0.90459 0.90805 0.93641 0.93925 0.94879 0.93937 0.96762 0.95089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.36 -5.04 10.24 -55.14 -0.56 -5.60 16 3 C 0.04 0.49 4.78 36.01 0.17 0.66 16 4 C 0.50 7.56 6.92 -10.98 -0.08 7.48 16 5 O -0.48 -9.62 10.07 -14.35 -0.14 -9.77 16 6 N -0.61 -7.76 2.95 -165.22 -0.49 -8.24 16 7 C 0.11 0.89 6.35 -3.71 -0.02 0.87 16 8 C -0.14 -1.07 6.08 -26.61 -0.16 -1.23 16 9 C -0.12 -1.13 5.88 -26.69 -0.16 -1.29 16 10 C -0.14 -1.84 4.72 -26.61 -0.13 -1.97 16 11 C 0.16 2.42 2.82 -67.60 -0.19 2.23 16 12 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.10 -2.03 2.13 -88.47 -0.19 -2.21 16 14 H 0.11 2.53 5.87 -52.33 -0.31 2.22 16 15 C -0.14 -3.01 5.30 -24.90 -0.13 -3.15 16 16 C 0.18 5.04 5.37 -3.06 -0.02 5.02 16 17 N -0.60 -16.93 3.39 -170.07 -0.58 -17.51 16 18 C -0.22 -6.76 10.28 -15.05 -0.15 -6.92 16 19 H 0.07 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -29.18 10.31 55.49 0.57 -28.61 16 22 Si 0.91 23.43 29.55 -169.99 -5.02 18.40 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C 0.13 3.04 6.61 -2.53 -0.02 3.03 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16 31 H 0.07 0.67 7.95 -51.93 -0.41 0.25 16 32 H 0.08 0.47 5.93 -51.93 -0.31 0.16 16 33 H 0.07 0.49 8.14 -51.94 -0.42 0.07 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.15 6.44 -51.93 -0.33 0.82 16 39 H 0.08 1.16 5.70 -51.93 -0.30 0.86 16 40 H 0.07 1.67 5.56 -51.93 -0.29 1.38 16 41 H 0.05 0.92 5.46 -51.93 -0.28 0.64 16 42 H 0.04 1.32 7.38 -51.93 -0.38 0.94 16 43 H 0.03 0.99 7.51 -51.93 -0.39 0.60 16 44 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.01 0.32 5.99 -51.93 -0.31 0.01 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -36.38 340.60 -8.63 -45.01 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.49 Total: -2.31 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -0.05 Total: 3.48 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.49 Total: -54.35 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.71 Total: -15.37 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.38 -8.63 -45.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039180998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.788 kcal (2) G-P(sol) polarization free energy of solvation -36.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds