Wall clock time and date at job start Tue Mar 31 2020 03:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00123 * 2 1 4 4 H 1.08994 * 109.47038 * 330.00147 * 3 2 1 5 5 C 1.53002 * 109.47116 * 89.99877 * 3 2 1 6 6 C 1.50695 * 109.47026 * 209.99720 * 3 2 1 7 7 O 1.21282 * 120.00352 * 0.02562 * 6 3 2 8 8 N 1.34780 * 119.99895 * 179.97438 * 6 3 2 9 9 C 1.47483 * 125.66190 * 0.02818 * 8 6 3 10 10 C 1.55022 * 104.90076 * 203.99664 * 9 8 6 11 11 C 1.54516 * 101.53468 * 323.61733 * 10 9 8 12 12 C 1.47179 * 125.66161 * 180.02562 * 8 6 3 13 13 C 1.52275 * 110.20943 * 153.22754 * 11 10 9 14 14 C 1.53310 * 109.41924 * 182.19993 * 13 11 10 15 15 N 1.46924 * 108.70663 * 306.48348 * 14 13 11 16 16 C 1.36936 * 120.56433 * 234.21765 * 15 14 13 17 17 H 1.07991 * 120.00140 * 27.95104 * 16 15 14 18 18 C 1.38814 * 119.99688 * 207.94543 * 16 15 14 19 19 N 1.31617 * 120.00354 * 17.45444 * 18 16 15 20 20 Si 1.86805 * 119.99834 * 197.44455 * 18 16 15 21 21 H 1.48503 * 109.46799 * 60.00556 * 20 18 16 22 22 H 1.48507 * 109.46892 * 180.02562 * 20 18 16 23 23 H 1.48489 * 109.47275 * 300.00392 * 20 18 16 24 24 C 1.46931 * 118.87008 * 54.24234 * 15 14 13 25 25 C 1.52272 * 110.20656 * 276.41817 * 11 10 9 26 26 H 1.08999 * 109.46996 * 59.99728 * 1 2 3 27 27 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46610 * 300.00075 * 1 2 3 29 29 H 1.08999 * 109.46974 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.47419 * 300.00198 * 5 3 2 31 31 H 1.09003 * 109.47223 * 60.00191 * 5 3 2 32 32 H 1.09002 * 110.35440 * 322.85121 * 9 8 6 33 33 H 1.08996 * 110.35242 * 85.03149 * 9 8 6 34 34 H 1.08992 * 111.01598 * 81.68410 * 10 9 8 35 35 H 1.09004 * 111.01436 * 205.56016 * 10 9 8 36 36 H 1.09000 * 109.90810 * 297.88277 * 12 8 6 37 37 H 1.08998 * 109.91177 * 59.14819 * 12 8 6 38 38 H 1.08996 * 109.47868 * 302.18880 * 13 11 10 39 39 H 1.08998 * 109.47538 * 62.21317 * 13 11 10 40 40 H 1.09004 * 109.59555 * 186.71739 * 14 13 11 41 41 H 1.08994 * 109.59890 * 66.25782 * 14 13 11 42 42 H 0.97001 * 120.00210 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.60031 * 185.99417 * 24 15 14 44 44 H 1.08998 * 109.73055 * 65.59564 * 24 15 14 45 45 H 1.08998 * 109.47850 * 297.77664 * 25 11 10 46 46 H 1.08997 * 109.47962 * 57.80377 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3386 1.2638 -0.7103 7 8 3.7472 0.2192 -1.1716 8 7 4.0722 2.3877 -0.8339 9 6 3.6974 3.7196 -0.3235 10 6 4.4841 4.7211 -1.2074 11 6 5.8123 3.9627 -1.4265 12 6 5.3804 2.4895 -1.5006 13 6 6.4574 4.3988 -2.7351 14 6 7.7441 3.5966 -2.9613 15 7 8.5964 3.7277 -1.7718 16 6 9.8904 4.1608 -1.8865 17 1 10.1709 4.8146 -2.6990 18 6 10.8414 3.7596 -0.9584 19 7 10.6100 2.7188 -0.1868 20 14 12.4500 4.6969 -0.8047 21 1 12.1674 6.1088 -0.4414 22 1 13.2881 4.0720 0.2501 23 1 13.1734 4.6545 -2.1008 24 6 8.0368 3.3856 -0.4569 25 6 6.7481 4.1893 -0.2469 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.6615 2.7669 1.4425 30 1 1.2569 1.8014 1.9564 31 1 2.8830 1.0774 1.9564 32 1 2.6247 3.8793 -0.4324 33 1 3.9910 3.8216 0.7212 34 1 3.9716 4.8934 -2.1538 35 1 4.6525 5.6598 -0.6794 36 1 6.1090 1.8630 -0.9860 37 1 5.2913 2.1806 -2.5421 38 1 5.7667 4.2180 -3.5588 39 1 6.6952 5.4614 -2.6867 40 1 8.2699 3.9870 -3.8327 41 1 7.4973 2.5470 -3.1205 42 1 11.2747 2.4382 0.4615 43 1 8.7556 3.6370 0.3230 44 1 7.8132 2.3195 -0.4183 45 1 6.9891 5.2497 -0.1726 46 1 6.2611 3.8619 0.6716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040625817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:14 Heat of formation + Delta-G solvation = -53.752763 kcal Electronic energy + Delta-G solvation = -25540.621137 eV Core-core repulsion = 22045.085414 eV Total energy + Delta-G solvation = -3495.535723 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.53908 -38.95172 -37.39553 -35.85988 -33.34098 -31.79460 -30.87481 -29.99805 -29.29736 -27.04472 -26.66177 -25.06086 -23.63047 -22.67196 -22.20663 -20.68700 -19.55625 -18.19632 -17.43292 -16.86106 -16.23883 -15.91093 -15.73369 -15.27970 -14.88122 -14.18354 -14.02187 -13.83266 -13.69356 -13.39976 -13.25951 -13.10414 -12.82022 -12.69434 -12.36666 -12.28062 -12.13446 -11.76748 -11.64838 -11.38505 -11.30905 -11.12123 -10.91309 -10.70215 -10.46695 -10.23427 -10.17308 -10.14637 -9.83315 -9.52463 -9.48607 -9.36598 -8.52610 -8.41203 -6.64238 -5.76729 -3.19077 2.64604 2.78425 3.39309 3.45318 3.46129 3.75871 4.35579 4.51063 4.60388 4.65167 4.76646 4.85983 4.98986 5.02660 5.10902 5.24370 5.33452 5.39193 5.41628 5.42869 5.44307 5.46489 5.65755 5.72117 5.88943 5.90807 5.96443 6.07234 6.11784 6.23364 6.30588 6.31784 6.48021 6.60092 6.65471 6.75044 6.83261 6.86616 6.99694 7.36249 7.59987 7.67805 7.81013 8.26442 8.47025 9.23189 9.86865 10.43530 11.31501 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.003604 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.535384 B = 7767.266943 C = 8001.148286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.075 3.925 4 H 0.084 0.916 5 C -0.178 4.178 6 C 0.525 3.475 7 O -0.520 6.520 8 N -0.614 5.614 9 C 0.097 3.903 10 C -0.128 4.128 11 C -0.055 4.055 12 C 0.118 3.882 13 C -0.117 4.117 14 C 0.142 3.858 15 N -0.590 5.590 16 C -0.253 4.253 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.169 3.831 25 C -0.127 4.127 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.254 0.746 43 H 0.088 0.912 44 H 0.020 0.980 45 H 0.059 0.941 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.444 3.616 1.880 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.014 3.986 4 H 0.101 0.899 5 C -0.235 4.235 6 C 0.312 3.688 7 O -0.395 6.395 8 N -0.350 5.350 9 C -0.026 4.026 10 C -0.166 4.166 11 C -0.056 4.056 12 C -0.003 4.003 13 C -0.157 4.157 14 C 0.016 3.984 15 N -0.313 5.313 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.731 3.269 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.044 3.956 25 C -0.166 4.166 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.078 0.922 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.028 2.693 1.757 20.285 hybrid contribution 0.563 0.700 0.201 0.920 sum -19.466 3.393 1.958 19.856 Atomic orbital electron populations 1.22866 0.80802 1.03178 0.99880 1.88059 1.19490 1.25290 1.94917 1.21856 0.93463 0.86528 0.96762 0.89865 1.22372 1.03309 1.02867 0.94981 1.19965 0.85675 0.82783 0.80403 1.90736 1.71315 1.29535 1.47929 1.48537 1.21292 1.08048 1.57097 1.22498 0.99132 0.82452 0.98495 1.22902 0.96119 0.97876 0.99687 1.20983 0.94044 0.92564 0.98027 1.22164 0.83037 0.97569 0.97515 1.21915 0.98376 1.01070 0.94321 1.20954 0.90331 0.96047 0.91087 1.44023 1.09392 1.77543 1.00355 1.19137 0.84695 1.22222 1.12255 0.91756 1.25038 0.97523 0.96351 1.00708 1.70027 1.35341 1.23826 1.25391 0.86385 0.83466 0.79570 0.77436 1.21086 1.21674 1.20923 1.20829 0.91157 0.94453 0.89200 1.22101 0.98024 1.01705 0.94757 0.93939 0.89178 0.93916 0.90251 0.91408 0.90951 0.91191 0.90883 0.90890 0.89818 0.90186 0.91607 0.92958 0.91760 0.92741 0.96329 0.93579 0.89385 0.96244 0.92187 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.36 -4.80 9.88 -55.14 -0.54 -5.34 16 3 C 0.08 0.89 2.49 -27.88 -0.07 0.82 16 4 H 0.08 0.75 7.49 -51.93 -0.39 0.36 16 5 C -0.18 -1.68 9.34 37.16 0.35 -1.33 16 6 C 0.52 8.40 7.29 -10.99 -0.08 8.32 16 7 O -0.52 -10.86 16.83 -14.35 -0.24 -11.10 16 8 N -0.61 -8.91 3.33 -170.67 -0.57 -9.47 16 9 C 0.10 1.03 4.82 -2.44 -0.01 1.02 16 10 C -0.13 -1.45 5.99 -24.87 -0.15 -1.60 16 11 C -0.06 -0.85 0.53 -154.09 -0.08 -0.93 16 12 C 0.12 2.00 5.06 -3.31 -0.02 1.98 16 13 C -0.12 -1.91 4.70 -26.94 -0.13 -2.04 16 14 C 0.14 2.93 6.24 -3.65 -0.02 2.90 16 15 N -0.59 -14.51 2.98 -172.17 -0.51 -15.03 16 16 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 17 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 18 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 19 N -0.90 -26.22 11.19 55.49 0.62 -25.60 16 20 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 C 0.17 3.94 5.03 -3.64 -0.02 3.92 16 25 C -0.13 -2.25 4.78 -26.94 -0.13 -2.38 16 26 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.27 7.87 -51.93 -0.41 -0.13 16 29 H 0.08 0.65 4.99 -51.93 -0.26 0.39 16 30 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.55 7.37 -51.93 -0.38 0.17 16 33 H 0.07 0.73 6.68 -51.93 -0.35 0.38 16 34 H 0.07 0.77 8.01 -51.93 -0.42 0.35 16 35 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 36 H 0.08 1.60 6.07 -51.93 -0.32 1.29 16 37 H 0.07 1.15 7.59 -51.93 -0.39 0.76 16 38 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 41 H 0.02 0.40 7.47 -51.93 -0.39 0.01 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.09 2.32 6.02 -51.93 -0.31 2.01 16 44 H 0.02 0.49 6.53 -51.93 -0.34 0.15 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.05 0.80 7.49 -51.93 -0.39 0.41 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -33.24 349.05 -8.17 -41.41 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.66 Total: -1.68 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 0.51 Total: 4.97 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.46 Total: -50.10 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.79 Total: -16.45 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.24 -8.17 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040625817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.345 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds